BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0538.0017.p (163 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value O07006.1 PADC_BACSU Phenolic acid decarboxylase padC EC=4.1.1.- 291 1e-77 A7Z928.1 A7Z928_BACA2 PadC 289 5e-77 Q65FC9.1 Q65FC9_BACLD Phenolic acid decarboxylase 289 6e-77 Q8KNX7.1 Q8KNX7_9BACI Phenolic acid decarboxylase 287 2e-76 A8FAY2.1 A8FAY2_BACP2 Phenolic acid decarboxylase 272 9e-72 >O07006.1 PADC_BACSU Phenolic acid decarboxylase padC EC=4.1.1.- Length = 161 Score = 291 bits (745), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 133/151 (88%), Positives = 149/151 (98%) Query: 7 LKDFVGSHMIYTYEIGWEYEIYIKNDHTIDYRIHSGMVAGRWVRDQEVDIVKLTEGVYKV 66 +++F+GSHMIYTYE GWEYEIYIKNDHTIDYRIHSGMVAGRWVRDQEV+IVKLTEGVYKV Sbjct: 1 MENFIGSHMIYTYENGWEYEIYIKNDHTIDYRIHSGMVAGRWVRDQEVNIVKLTEGVYKV 60 Query: 67 SWTEPTGTDVALNFMPNEKRMHGVIFFPKWVHEHPEITVCYQNDYLELMKESREKYETYP 126 SWTEPTGTDV+LNFMPNEKRMHG+IFFPKWVHEHPEITVCYQND+++LMKESREKYETYP Sbjct: 61 SWTEPTGTDVSLNFMPNEKRMHGIIFFPKWVHEHPEITVCYQNDHIDLMKESREKYETYP 120 Query: 127 KYVVPEFADITFLENAGIDNQELISKAPYKG 157 KYVVPEFA+ITFL+N G+DN+E+ISKAPY+G Sbjct: 121 KYVVPEFAEITFLKNEGVDNEEVISKAPYEG 151 >A7Z928.1 A7Z928_BACA2 PadC Length = 162 Score = 289 bits (740), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 132/151 (87%), Positives = 147/151 (97%) Query: 7 LKDFVGSHMIYTYEIGWEYEIYIKNDHTIDYRIHSGMVAGRWVRDQEVDIVKLTEGVYKV 66 +++F+GSHMIYTYE GWEYEIYIKNDHTIDYRIHSGMV GRWVRDQEV+IVKLTEGVYKV Sbjct: 1 MENFIGSHMIYTYENGWEYEIYIKNDHTIDYRIHSGMVGGRWVRDQEVNIVKLTEGVYKV 60 Query: 67 SWTEPTGTDVALNFMPNEKRMHGVIFFPKWVHEHPEITVCYQNDYLELMKESREKYETYP 126 SWTEPTGTDV+LNFMPNEKRMHG+IFFPKWVHEHPEITVCYQNDY+++MKESREKYETYP Sbjct: 61 SWTEPTGTDVSLNFMPNEKRMHGIIFFPKWVHEHPEITVCYQNDYIDVMKESREKYETYP 120 Query: 127 KYVVPEFADITFLENAGIDNQELISKAPYKG 157 KYVVPEFADIT+L NAGI+N+ LIS+APY+G Sbjct: 121 KYVVPEFADITYLNNAGINNEALISEAPYEG 151 >Q65FC9.1 Q65FC9_BACLD Phenolic acid decarboxylase Length = 166 Score = 289 bits (740), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 133/153 (86%), Positives = 147/153 (96%) Query: 5 EALKDFVGSHMIYTYEIGWEYEIYIKNDHTIDYRIHSGMVAGRWVRDQEVDIVKLTEGVY 64 + +K+FVGSHMIYTYE GWEYEIYIKNDHTIDYRIHSGMV GRWVRDQ+ DIVKLTEGVY Sbjct: 3 QDVKEFVGSHMIYTYENGWEYEIYIKNDHTIDYRIHSGMVGGRWVRDQKADIVKLTEGVY 62 Query: 65 KVSWTEPTGTDVALNFMPNEKRMHGVIFFPKWVHEHPEITVCYQNDYLELMKESREKYET 124 KVSWTEPTGTDV+LNFMPNEKRMHG+IFFPKWVHE P+ITVCYQND+++LM+ESREKYET Sbjct: 63 KVSWTEPTGTDVSLNFMPNEKRMHGIIFFPKWVHERPDITVCYQNDHIDLMEESREKYET 122 Query: 125 YPKYVVPEFADITFLENAGIDNQELISKAPYKG 157 YPKYVVPEFADITF+ENAGIDN++LISKAPY G Sbjct: 123 YPKYVVPEFADITFIENAGIDNEDLISKAPYPG 155 >Q8KNX7.1 Q8KNX7_9BACI Phenolic acid decarboxylase Length = 161 Score = 287 bits (735), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 132/151 (87%), Positives = 147/151 (97%) Query: 7 LKDFVGSHMIYTYEIGWEYEIYIKNDHTIDYRIHSGMVAGRWVRDQEVDIVKLTEGVYKV 66 +++F+GSHMIYTYE GWEYEIYIKNDHTIDYRIHS MVAGRWVRDQEV+IVKLTEGVYKV Sbjct: 1 MENFIGSHMIYTYENGWEYEIYIKNDHTIDYRIHSRMVAGRWVRDQEVNIVKLTEGVYKV 60 Query: 67 SWTEPTGTDVALNFMPNEKRMHGVIFFPKWVHEHPEITVCYQNDYLELMKESREKYETYP 126 SWTEPTGTDV+LNFMPNEKRMHG+IFFPKWVHEHPEITVCYQND+++LMKESREKYETYP Sbjct: 61 SWTEPTGTDVSLNFMPNEKRMHGIIFFPKWVHEHPEITVCYQNDHIDLMKESREKYETYP 120 Query: 127 KYVVPEFADITFLENAGIDNQELISKAPYKG 157 KYVVPEFA+ITFL+N G DN+E+ISKAPY+G Sbjct: 121 KYVVPEFAEITFLKNEGADNEEVISKAPYEG 151 >A8FAY2.1 A8FAY2_BACP2 Phenolic acid decarboxylase Length = 161 Score = 272 bits (695), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 125/151 (82%), Positives = 142/151 (94%) Query: 7 LKDFVGSHMIYTYEIGWEYEIYIKNDHTIDYRIHSGMVAGRWVRDQEVDIVKLTEGVYKV 66 + FVG HMIYTYE GWEYEIYIKNDHTIDYRIHSGMV GRWVRDQEV+IVKLT+GVYKV Sbjct: 1 MDQFVGLHMIYTYENGWEYEIYIKNDHTIDYRIHSGMVGGRWVRDQEVNIVKLTKGVYKV 60 Query: 67 SWTEPTGTDVALNFMPNEKRMHGVIFFPKWVHEHPEITVCYQNDYLELMKESREKYETYP 126 SWTEPTGTDV+LNFMP EKRMHGVIFFPKWVHE P+ITVCYQNDY++LMKESREKYETYP Sbjct: 61 SWTEPTGTDVSLNFMPEEKRMHGVIFFPKWVHERPDITVCYQNDYIDLMKESREKYETYP 120 Query: 127 KYVVPEFADITFLENAGIDNQELISKAPYKG 157 KYVVPEFADIT++ +AGI+++ +I++APY+G Sbjct: 121 KYVVPEFADITYIHHAGINDETIIAEAPYEG 151 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.137 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,023,873,204 Number of extensions: 43186215 Number of successful extensions: 97033 Number of sequences better than 1.0e-05: 79 Number of HSP's gapped: 97021 Number of HSP's successfully gapped: 79 Length of query: 163 Length of database: 3,060,696,203 Length adjustment: 123 Effective length of query: 40 Effective length of database: 1,901,911,358 Effective search space: 76076454320 Effective search space used: 76076454320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)