BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0538.0010.p (503 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C1UGI1.1 C1UGI1_9ACTN Penicillin-binding protein, beta-lactamase... 185 7e-45 A3I9P3.1 A3I9P3_9BACI Penicillin-binding protein, putative 182 5e-44 C2Q4C5.1 C2Q4C5_BACCE Putative uncharacterized protein 182 9e-44 C3BLM1.1 C3BLM1_9BACI Putative uncharacterized protein 181 1e-43 C3B4V0.1 C3B4V0_BACMY Putative uncharacterized protein 179 5e-43 >C1UGI1.1 C1UGI1_9ACTN Penicillin-binding protein, beta-lactamase class C Length = 560 Score = 185 bits (470), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 118/346 (34%), Positives = 176/346 (50%), Gaps = 39/346 (11%) Query: 46 KIDDHVESMIEQLQIPGVALGIVKGDQIVYLKGYGTSGPDGDPITPQTPFILGSTTKSFT 105 ++D ++ + + PG+A+ +V + YL+ +G PD D PF++GS +KSFT Sbjct: 106 RMDAYLAANFPRAGAPGLAVAVVDAGGVRYLRTFGDC-PDAD-----APFVVGSLSKSFT 159 Query: 106 ALAIMQLVEQGKIDLNAPMQQYLPNFKLADPKAAEAILVKDLLHQVSGFSTYEGRRVFNN 165 A+A+MQLVEQG +DL+AP +Y P + + D + V+ LL+Q SGF Y Sbjct: 160 AVAVMQLVEQGAVDLDAPASRYAPGYDVPD-----EVTVRSLLNQTSGFGAY-------- 206 Query: 166 KFDSIDELATHLGDVSLSNPVGSTYHYSNLNYDLLGAIIQAASGQSYAEYVQEHIFNPLD 225 DS+ E A D L G+ + Y+N NYDLLG +++ ASG+ YA Y+ EH+ PL Sbjct: 207 --DSLAEAA----DGELGETFGA-FSYANANYDLLGRVVEGASGEDYARYLDEHVLEPLG 259 Query: 226 MKNSFTSVAEAQQNGLAKGYQSIFGYMLPKDFPNNPSI-----LASGYLISSAEDMAHYL 280 M ++ A A+ G+ G++ FG + F + ASGY+ SS DMA YL Sbjct: 260 MASTTADPARAEALGMVPGHRDWFGLPVADGFRHAQGDGAWGGPASGYVASSVRDMASYL 319 Query: 281 TAQLNNG-SYQNVSIVSPASVSTMHQPYAEDPSTGHYYGMGWEI----NGN-IIQHNGAI 334 LN G ++S SV M DP YYGMGW +G ++ H+G + Sbjct: 320 RMYLNGGMGGDGARVLSADSVRRMFLDRVPDPEGDTYYGMGWTSFSWDDGELVLSHDGQV 379 Query: 335 ENFYSDMIL--DGDTAIVVLINAQDFLVRGMNFSKIASGVQQIMNG 378 EN+ + M L + IV L +A D + F + GV + G Sbjct: 380 ENYTASMCLLPERGIGIVALSDANDNAGGNIRFFDLVGGVVSVAIG 425 >A3I9P3.1 A3I9P3_9BACI Penicillin-binding protein, putative Length = 475 Score = 182 bits (463), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 122/386 (31%), Positives = 201/386 (52%), Gaps = 26/386 (6%) Query: 46 KIDDHVESMIEQLQIPGVALGIVKGDQIVYLKGYGTSGPDGDPITPQTPFILGSTTKSFT 105 +I+ + +E+ IPG +L +V Q ++ +GT DG +T + F++GS +K T Sbjct: 35 QIETFMNEALEKYHIPGASLEVVHNGQTIFQDSWGTMS-DGSVVTEDSTFLIGSVSKPLT 93 Query: 106 ALAIMQLVEQGKIDLNAPMQQYLPNFKLADPKAAEAILVKDLLHQVSGFSTYEGRRVFN- 164 +LAIM LVE G+I L+ P++ Y+P F ++I V+ LL Q SG S Y+G +V + Sbjct: 94 SLAIMMLVEDGEIKLDEPIETYIPWFTY-QTDGTKSITVRHLLEQTSGISAYDGMKVTDQ 152 Query: 165 ---NKFDSIDELATHLGDVSLSNPVGSTYHYSNLNYDLLGAIIQAASGQSYAEYVQEHIF 221 +K + I + T L V LS G Y Y++ NY LLGAII+A S QS++ +++ HIF Sbjct: 153 QGRDKENGITQAVTELSGVQLSRIPGEAYEYNSANYLLLGAIIEAVSNQSFSAFMETHIF 212 Query: 222 NPLDMKNSFTSVAEAQQNGLAKGYQSIFGYMLPKDFPNNPSILASGYLISSAEDMAHYLT 281 +PL M N+ A + G G+ S FG + D + S GY+ S+A D+ ++ Sbjct: 213 SPLGMNNTSADYERAVERGFVPGFHSWFGQPVKGDGLYDQSGAPYGYMSSTASDLTKFIE 272 Query: 282 AQLNNGSYQNVSIVSPASVSTMHQPYAEDPSTGHYYGMGWEI--NGNII-QHNGAIENFY 338 L+ G ++S S+ + P P G YG+GW +GN H GA + Sbjct: 273 LMLDGG-----QLLSQQSLKQLQTP----PENGGRYGLGWHFPRSGNKYPYHTGATPEYK 323 Query: 339 SDMILDGDTAI--VVLINAQDFLVRGMNFSKIASGVQQIMNGQEPTGVEITNVTRTYAII 396 S++ + + V+L+N L +++ I G++ IMNG+ P V++ NV+ + + Sbjct: 324 SEIFFIPERGLGAVLLMNKYHEL-EAVSYLSIMEGIRSIMNGENPDLVQL-NVSTQWITL 381 Query: 397 DSICVIIAALVVWSIYNLFEWKKKFT 422 +I L S+ +L K++ T Sbjct: 382 G----VILLLAFISVISLIRLKRRIT 403 >C2Q4C5.1 C2Q4C5_BACCE Putative uncharacterized protein Length = 486 Score = 182 bits (461), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 119/382 (31%), Positives = 208/382 (54%), Gaps = 17/382 (4%) Query: 47 IDDHVESMIEQLQIPGVALGIVKGDQIVYLKGYGTSGPDGDPITPQTPFILGSTTKSFTA 106 +D ++E I++ IPG ++ IV + + K +G +G +T +TPF +GS +KS TA Sbjct: 37 LDKYIEKFIKEQNIPGASVAIVHHKDVFFTKTWGITGESEKKVTSKTPFAIGSISKSLTA 96 Query: 107 LAIMQLVEQGKIDLNAPMQQYLPNFKLADPKAAEAILVKDLLHQVSGFSTYEGRRVFNNK 166 LAI++L+E KI L +QQ+LP FK+ D ++A I ++ LL SG STYEG + + + Sbjct: 97 LAIVKLIEDKKIKLEDSVQQHLPWFKVKDNQSASNITIQHLLTHSSGMSTYEGLALSDKQ 156 Query: 167 FDS---IDELATHLGDVSLSNPVGSTYHYSNLNYDLLGAIIQAASGQSYAEYVQEHIFNP 223 + I E L +V+L+ P G Y YSN NY +LGA+I+ S ++Y+ Y+++ IF P Sbjct: 157 SKTTTAIKENVMKLSNVTLTAPPGQKYQYSNANYLVLGALIEEVSKETYSTYMEKQIFQP 216 Query: 224 LDMKNSFTSVAEAQQNGLAKGYQSIFGYMLPKDFPNNPSILASGYLISSAEDMAHYLTAQ 283 L M + + E+ + G GYQS FG + GY+ ++ EDM ++ Sbjct: 217 LRMNGAAANSEESYKKGYLTGYQSWFGIPRKSTVSYDNGGTPYGYITANLEDMIQFIKF- 275 Query: 284 LNNGSYQNVSIVSPASVSTMHQPYAEDPSTGHYYGMGWE---INGN--IIQHNGAIENFY 338 LN+ ++ ++ S+ P + S YYG G INGN ++ H+G+ + + Sbjct: 276 LNHQ--EHTQFLNKDSMDLYLSPLYKIDS-AKYYGFGLRTTNINGNEKMVWHSGSTPDSH 332 Query: 339 SDMILDGDTAI-VVLINAQDFLVRGMNFSKIASGVQQIMNGQEPTGVEITNVTRTYAIID 397 +++ + +T VV++ ++ ++ + + G+ I+NG+EP V+I I+ Sbjct: 333 AEIFILNETGWGVVILTNKNHVLEEASLPEFKKGIINILNGEEP--VDIPKNIPIVQIVM 390 Query: 398 SICVIIAALVVWSIYNLFEWKK 419 SI +I AL + +I + ++K+ Sbjct: 391 SI--LIFALFITAIMLIIKYKR 410 >C3BLM1.1 C3BLM1_9BACI Putative uncharacterized protein Length = 472 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 118/384 (30%), Positives = 204/384 (53%), Gaps = 19/384 (4%) Query: 47 IDDHVESMIEQLQIPGVALGIVKGDQIVYLKGYGTSGPDGDPITPQTPFILGSTTKSFTA 106 ID++VE+ +++ +IPG ++ IV + + Y K +G + + +T +TPF +GS +KS T Sbjct: 20 IDNYVETFLKEHRIPGASIAIVHENDLFYSKAWGVTEETEEKVTTETPFTIGSISKSLTG 79 Query: 107 LAIMQLVEQGKIDLNAPMQQYLPNFKLADPKAAEAILVKDLLHQVSGFSTYEGRRVFNNK 166 LAIM+L+E+GK+DL P+Q+Y+P F L D +AA I +K LL SG STY G + + + Sbjct: 80 LAIMKLMEEGKVDLEDPVQKYIPWFTLKDKEAASNITIKHLLTHSSGISTYSGLSISDKE 139 Query: 167 ---FDSIDELATHLGDVSLSNPVGSTYHYSNLNYDLLGAIIQAASGQSYAEYVQEHIFNP 223 F +I +L +V+L+ G + YSN N+ +LGA+I+ + Q+Y++Y+++ +F P Sbjct: 140 SKDFHAIKNNVENLSNVTLTVSPGEKHQYSNANFLILGALIEEVTNQTYSDYMKQEVFLP 199 Query: 224 LDMKNSFTSVAEAQQNGLAKGYQSIFGYMLPKDFPNNPSILASGYLISSAEDMAHYLTAQ 283 L MK++ A + G GYQS FG + GY+ +SAEDM Y+ Sbjct: 200 LGMKSAAADNDTAYKKGYLAGYQSWFGIPRKSSVTYDNGGAPYGYITASAEDMLQYIKFL 259 Query: 284 LNNGSYQNVSIVSPASVSTMHQPYAEDPSTGHYYGMGWEI-----NGNIIQHNGAIENFY 338 +N + ++ +++ P+ + YYG+G I + +I H+G+ + + Sbjct: 260 ---SRQENANFLTENTMNLYVSPHVQT-GENRYYGLGVRITNPVSDEKMIWHSGSTPDSH 315 Query: 339 SDMILDGDTAI--VVLINAQDFLVRGMNFSKIASGVQQIMNGQEPTGVEITNVTRTYAII 396 ++M T V+L N ++ ++ S + G+ ++NG EP + I Sbjct: 316 AEMFFIPKTGWGGVILTN-KNHILEEEALSYLKQGIINVINGNEPVDIPSNTPIVQLVTI 374 Query: 397 DSICVIIAALVVWSIYNLFEWKKK 420 IC++ LV Y L + K K Sbjct: 375 GVICLLFVMLV----YLLIKMKSK 394 >C3B4V0.1 C3B4V0_BACMY Putative uncharacterized protein Length = 489 Score = 179 bits (455), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 117/384 (30%), Positives = 205/384 (53%), Gaps = 19/384 (4%) Query: 47 IDDHVESMIEQLQIPGVALGIVKGDQIVYLKGYGTSGPDGDPITPQTPFILGSTTKSFTA 106 ID++VE+ +++ +IPG ++ IV + + Y K +G +G + +T +TPF +GS +KS T Sbjct: 37 IDNYVETFLKEHRIPGASIAIVHENDLFYSKAWGVTGETEEKVTTETPFTIGSISKSLTG 96 Query: 107 LAIMQLVEQGKIDLNAPMQQYLPNFKLADPKAAEAILVKDLLHQVSGFSTYEGRRVFNNK 166 LAI++L+E+G + L P+++YLP F L D +A I +K LL SG STY G + + + Sbjct: 97 LAIIKLIEKGTVHLEDPVKKYLPWFTLKDKEATSKITIKHLLTHSSGISTYSGLAISDKE 156 Query: 167 ---FDSIDELATHLGDVSLSNPVGSTYHYSNLNYDLLGAIIQAASGQSYAEYVQEHIFNP 223 F++I + L +V+L+ G + YSN N+ +LGA+I+ + Q+Y++Y+++ IF P Sbjct: 157 SDGFNAIKDNVKSLSNVTLTASPGEKHQYSNANFLILGALIEEVTNQTYSDYMKQEIFLP 216 Query: 224 LDMKNSFTSVAEAQQNGLAKGYQSIFGYMLPKDFPNNPSILASGYLISSAEDMAHYLTAQ 283 L MKN+ A + G GYQS FG + + GY+ +SAEDM Y+ Sbjct: 217 LGMKNAAADNDTAYKKGYLAGYQSWFGIPIKSSVTYDNGGAPYGYITASAEDMIQYIKFL 276 Query: 284 LNNGSYQNVSIVSPASVSTMHQPYAEDPSTGHYYGMGWEING-----NIIQHNGAIENFY 338 +N + ++ +++ P+ + T YYG+G I +I H+G+ + + Sbjct: 277 ---SRQENDNFLTENTMNLYISPHVQTGET-RYYGLGVRITNPDSEEKMIWHSGSTPDSH 332 Query: 339 SDMILDGDTAI--VVLINAQDFLVRGMNFSKIASGVQQIMNGQEPTGVEITNVTRTYAII 396 ++M T V+L N ++ ++ S + G+ ++NG EP + + Sbjct: 333 AEMFFIPKTGWGGVILTN-KNHILEEEALSYLKQGIINVINGNEPVDIPSNTPIVQLVTL 391 Query: 397 DSICVIIAALVVWSIYNLFEWKKK 420 +IC++ LV Y L + K K Sbjct: 392 GTICLLFVMLV----YLLIKMKSK 411 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,676,666,537 Number of extensions: 109876862 Number of successful extensions: 282584 Number of sequences better than 1.0e-05: 3460 Number of HSP's gapped: 278831 Number of HSP's successfully gapped: 3474 Length of query: 503 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 363 Effective length of database: 1,741,754,103 Effective search space: 632256739389 Effective search space used: 632256739389 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)