BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0538.0008.p (352 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q1DCH4.1 Q1DCH4_MYXXD Putative uncharacterized protein 220 2e-55 Q08Y07.1 Q08Y07_STIAU Putative uncharacterized protein 207 2e-51 B1DCT4.1 B1DCT4_9BACL Putative uncharacterized protein 179 4e-43 Q92D79.1 Q92D79_LISIN Lin0939 protein 175 6e-42 Q72PK1.1 Q72PK1_LEPIC Putative uncharacterized protein 174 9e-42 >Q1DCH4.1 Q1DCH4_MYXXD Putative uncharacterized protein Length = 374 Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 122/348 (35%), Positives = 192/348 (55%), Gaps = 8/348 (2%) Query: 11 LMEEAYGLPGGKAKLELLEQAVRVADAAGDIDQGYEARSEIVELGSFHGYPMKALVAFSW 70 L +A GL G++K+ LLE+AVR+AD D+ GY R +++ +F G+P KALVAF+W Sbjct: 12 LFAQADGLAEGESKVRLLEEAVRLADTHKDVGMGYRMRDALIDAATFGGFPDKALVAFAW 71 Query: 71 QLGQYDKNPGRFDDYSLMWSYKWVLDRISAFAEISRVQIENLLEDMKTRFAAEGYSSRTY 130 GQ K+P RFD + W KWV+ RI F I+R QI + L+D++ F A R Sbjct: 72 CRGQQKKDPKRFDPEEMFWKQKWVVGRIKEFPHITRKQILDALDDVEQCFRATDSGVRAV 131 Query: 131 HYYRAKLLADFGELDASEAE--WDIVQSMERDEMSDCEACEQHGLVEFLAKRNEDEKTVK 188 R + + G+ A E E W+ RD ++DC CE ++ A + E ++ ++ Sbjct: 132 LKMRYQAAREMGDA-AEEVERLWNAWLETRRDHLTDCRVCELDDELDHHADKGEWQQVLR 190 Query: 189 AAEPILKGRMTCGEVPHVTITKVLFPLLRLGRQSEADKLQKKGYKLVKGNRDFLYHQGEH 248 A+PIL GR +C E+PH+T+ VL+PL +LG A ++ ++GY +V NR+FL GEH Sbjct: 191 KAKPILDGRKSCAEIPHLTLGTVLYPLFKLGELEHAREIHRRGYAMVTKNREFLSTVGEH 250 Query: 249 IGYLTLTDPI-KALEVFEEYIASSLDHENPVDQMIFNAYSAKMFRRLAEESIR--FQVKL 305 + +L LTD + + L + E+++ +LDH + D+ F A +A + R+ R ++L Sbjct: 251 MEFLALTDNLARGLTLLEKHLGWALDHPSYRDRFTFYAAAAFLLERVLAAGDRDVVSLRL 310 Query: 306 PAGHPYERQSG--EVESLAKYFQKLALSTAEKLDKRNGNAYYTTLLQQ 351 P P + G +V +L + A A + D RNG + LL + Sbjct: 311 PKTFPNHQADGGYDVRALHAWTLGQARDIANRFDTRNGTDRFAKLLAR 358 >Q08Y07.1 Q08Y07_STIAU Putative uncharacterized protein Length = 348 Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 115/328 (35%), Positives = 174/328 (53%), Gaps = 4/328 (1%) Query: 28 LEQAVRVADAAGDIDQGYEARSEIVELGSFHGYPMKALVAFSWQLGQYDKNPGRFDDYSL 87 LE+A R+A+ GD+ ++ R E+++ +F GYP KALVAF+W Q KNP RFD + L Sbjct: 3 LEEAARMAEVHGDLALAFQVRDELIDAATFGGYPDKALVAFAWCRAQQKKNPDRFDAHPL 62 Query: 88 MWSYKWVLDRISAFAEISRVQIENLLEDMKTRFAAEGYSSRTYHYYRAKLLADFGELDAS 147 +W KWV+ R+ F ISR +I+ L D++ FA R R + D G+ + Sbjct: 63 LWKQKWVVGRLDEFPHISRKKIQEALADIEETFARVDAGKRAVLKLRYQTARDMGDEAEA 122 Query: 148 EAEWDIVQSMERDEMSDCEACEQHGLVEFLAKRNEDEKTVKAAEPILKGRMTCGEVPHVT 207 EA W RD ++DC AC+ +++ R E + A PIL GR C E+PH+T Sbjct: 123 EAYWAQWVVAPRDHLTDCPACDLDDEIDYHIDRGEYRLAHQKAAPILLGRSGCAEIPHLT 182 Query: 208 ITKVLFPLLRLGRQSEADKLQKKGYKLVKGNRDFLYHQGEHIGYLTLTDPI-KALEVFEE 266 +L+PL +LG EA + + GY L+ NRDFL GEHI +L LT + + L +FE Sbjct: 183 YGSLLYPLFKLGEVEEALRYHQIGYSLIHRNRDFLATVGEHIEFLVLTHNLAQGLALFER 242 Query: 267 YIASSLDHENPVDQMIFNAYSAKMFRRLAEESIR-FQVKLPAGHPYERQSG--EVESLAK 323 ++ +LDH + D+ F A + + RL +E ++LP + G E +L Sbjct: 243 HLGWALDHASHRDRFTFLAAAGFLLSRLRDEDRETVSLRLPKAFALHQAQGSYETHALHG 302 Query: 324 YFQKLALSTAEKLDKRNGNAYYTTLLQQ 351 + + A A + D RNG + LL++ Sbjct: 303 WVEAQARDIAARFDARNGTPRFQKLLER 330 >B1DCT4.1 B1DCT4_9BACL Putative uncharacterized protein Length = 350 Score = 179 bits (453), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 103/345 (29%), Positives = 182/345 (52%), Gaps = 14/345 (4%) Query: 8 FDDLMEEAYGLPGGKAKLELLEQAVRVADAAGDIDQGYEARSEIVELGSFHGYPMKALVA 67 F +L + +P GK KL +LE+ +RVAD ++ Y AR + G P + LV+ Sbjct: 5 FQELRRSTWSMPDGKQKLAVLEEMIRVADRYMTEEEAYHARMDYSNAAPECGCPERMLVS 64 Query: 68 FSWQLGQYDKNPGRFDDYSLMWSYKWVLDRISAFAEISRVQIENLLEDMKTRFAAEGYSS 127 FSW L +++ NPG + ++ +MW YKWVL + E+S QIE + ED K + GYS Sbjct: 65 FSWCLSKFENNPGEYSNFYIMWHYKWVLGYVWRMPELSLEQIERIYEDFKEKCVTYGYSL 124 Query: 128 RTYHYYRAKLLADFGELDASEAEWDIVQSMERDEMSDCEACEQHGLVEFLAKRNEDEKTV 187 R Y+ R L+ G+L + + ++ +RD +SDC ACEQ+ + N +K + Sbjct: 125 RVYYQKRVSLMLWQGKLAEAADYYKSWRAAKRDSLSDCSACEQNMFGSYHFAINHHKKGL 184 Query: 188 KAAEPILKGRMTCGEVPHVTITKVLFPLLRLGRQSEADKLQKKGYKLVKGNRDFLYHQGE 247 ++ +PIL+G+M+C +P T ++++ PLL+LG A + KK Y+ +KG +L G Sbjct: 185 QSLKPILEGKMSCRSIPESTYSEMMMPLLKLGEYDRALETAKKAYRALKGP-SYLEEYGT 243 Query: 248 HIGYLTLTDPIKALEVFEEYIASSLDHENPVDQMIFNAYSAKMFRRLAEESIRFQVKLPA 307 + + T+TD KA++++E+ I L + D++ + S+R +K + Sbjct: 244 FLQFFTVTDMPKAVKLYEQTIRLGLGSKLGWDRLQYML------------SVRIFLKEWS 291 Query: 308 GHPYERQSGEVESLA-KYFQKLALSTAEKLDKRNGNAYYTTLLQQ 351 ++ E E++ + + A+ ++RNGN + L+++ Sbjct: 292 KGKRRKKLAESETVTLAWLDEEIERLAQAFNRRNGNTFVEDLVRE 336 >Q92D79.1 Q92D79_LISIN Lin0939 protein Length = 320 Score = 175 bits (443), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 106/346 (30%), Positives = 172/346 (49%), Gaps = 27/346 (7%) Query: 6 MSFDDLMEEAYGLPGGKAKLELLEQAVRVADAAGDIDQGYEARSEIVELGSFHGYPMKAL 65 M + + +EEA+G+ K+++LE+A+ AD D++ G EAR +++ G+P K L Sbjct: 1 MDYLNDIEEAWGMDDNAEKVKILERAIASADMYNDVENGIEARDMLIDTCLTAGFPKKQL 60 Query: 66 VAFSWQLGQYDKNPGRFDDYSLMWSYKWVLDRISAFAEISRVQIENLLEDMKTRFAAEGY 125 AFSW + +++ + D Y L+W YKW+ + + F E+S+ QI+ LL DMK +F + Y Sbjct: 61 QAFSWLVKKWEDDAAYIDAYDLLWKYKWISEHVPTFDEVSKAQIDGLLNDMKVKFEQQNY 120 Query: 126 SSRTYHYYRAKLLADFGELDASEAEWDIVQSMERDEMSDCEACEQHGLVEFLAKRNEDEK 185 S R Y+ GE D +E ++ + + D ++DC ACE + V + + EK Sbjct: 121 SLRPYYKVCTLAAIRMGEKDKAEELFEKWNNTKADYLNDCPACETNDKVHYYCFIKDFEK 180 Query: 186 TVKAAEPILKGRMTCGEVPHVTITKVLFPLLRLGRQSEADKLQKKGYKLVKGNRDFLYHQ 245 KAA PI+KG+ +C EVPH+T + L LG + A + KGY LV+ + Sbjct: 181 AKKAAAPIIKGKQSCAEVPHLTYGNMALAYLELGDEKMAQECFDKGYPLVEKESSLIPPL 240 Query: 246 GEHIGYLTLTDPI-KALEVFEEYIASSLDHENPVDQMIFNAYSAKMFRRLAEESIRFQVK 304 + YL LT+ KA EV + L E+ +D+++F Sbjct: 241 SHLLKYLVLTNQTEKAREVIDTNKEIVLKSESGLDRLLF--------------------- 279 Query: 305 LPAGHPYERQSGEVESLAKYFQKLALSTAEKLDKRNGNAYYTTLLQ 350 L A +P + E + ++A + K D RN N+YY L+ Sbjct: 280 LQAAYPLLDRETETD-----LVEIAETLTAKFDARNENSYYQDRLK 320 >Q72PK1.1 Q72PK1_LEPIC Putative uncharacterized protein Length = 372 Score = 174 bits (442), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 111/335 (33%), Positives = 182/335 (54%), Gaps = 5/335 (1%) Query: 23 AKLELLEQAVRVADAAGDIDQGYEARSEIVELGSFHGYPMKALVAFSWQLGQYDKNPGRF 82 +K LLE+ +R+AD + + G+EAR +VE G F G KALV+FSW L Q D+NP +F Sbjct: 26 SKCPLLEEIIRLADLRKNKELGFEARLVLVEAGIFSGAIDKALVSFSWCLSQVDQNPEQF 85 Query: 83 DDYSLMWSYKWVLDRISAFAEISRVQIENLLEDMKTRFAAEGYSSRTYHYYRAKLLADFG 142 ++ L+W YKW+++ + F +I + QI +LED++ R+ G + + + G Sbjct: 86 NEEDLLWKYKWIVENLPVFPQIKKEQILEMLEDLEKRYEKNGGNKYPVLMLKRSISMMMG 145 Query: 143 ELDASEAEWDIV-QSMERDEMSDCEACEQHGLVEFLAKRNEDEKTVKAAEPILKGRMTCG 201 ++ S+ +++ Q+ + ++DC AC Q+ V + +DE ++ A+PIL G++ C Sbjct: 146 NIEESQKYHELLKQTTAKGRLADCAACVQNSEVFYAVHLGQDELALEKAQPILSGKLRCA 205 Query: 202 EVPHVTITKVLFPLLRLGRQSEADKLQKKGYKLVKGNRDFLYHQGEHIGYLTLTDPI-KA 260 EVPH+T +L PLLRL + EA +L K GYKLV + L H+ +L +T I KA Sbjct: 206 EVPHLTYGTLLLPLLRLNQPEEAARLHKIGYKLVSNSTGLLGTISNHLLFLGITGEIAKA 265 Query: 261 LEVFEEYIASSLDHENPVDQMIF-NAYSAKMFRRLAEESIRFQVKLPAGHPYERQSGE-- 317 +++ E++ S+ + + F A M R L ++++P P ++ G Sbjct: 266 IQLLEKHFTSAFGASDRNHRFEFYRAVKFLMERILLSNLKSIKIRMPKTFPNYKEDGNYA 325 Query: 318 VESLAKYFQKLALSTAEKLDKRNGNAYYTTLLQQL 352 V L +F + AL A + D RNGN Y L +L Sbjct: 326 VIDLDSWFGEEALKLASQFDSRNGNDSYMKNLGEL 360 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.134 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,038,162,634 Number of extensions: 80863160 Number of successful extensions: 207696 Number of sequences better than 1.0e-05: 51 Number of HSP's gapped: 207621 Number of HSP's successfully gapped: 51 Length of query: 352 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 215 Effective length of database: 1,770,017,148 Effective search space: 380553686820 Effective search space used: 380553686820 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)