BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0538.0005.p (299 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B0SJW6.1 B0SJW6_LEPBP Putative HTH-type transcriptional regulator 325 4e-87 B0S9N6.1 B0S9N6_LEPBA Transcription regulator 325 4e-87 Q1MBK7.1 Q1MBK7_RHIL3 Putative AraC family transcriptional regul... 270 1e-70 B0IUP3.1 B0IUP3_RHILT AraC-type transcriptional regulator domain... 266 2e-69 Q4ZQJ4.1 Q4ZQJ4_PSEU2 Helix-turn-helix, AraC type:AraC-type tran... 265 4e-69 >B0SJW6.1 B0SJW6_LEPBP Putative HTH-type transcriptional regulator Length = 295 Score = 325 bits (832), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 154/289 (53%), Positives = 202/289 (69%), Gaps = 1/289 (0%) Query: 1 MNNVLDEIIDLMKGAGTRQIETGVPGLSMIKGDIPAHQLAALYEPMIGFTVQGTKILSIG 60 M +++EI +L A T+ TG+P + MI+G++P HQLAA+YEP++G VQG K +SIG Sbjct: 1 MQKLVNEIAELCCSATTKPTLTGIPRVLMIQGEVPEHQLAAVYEPLVGLVVQGGKTISIG 60 Query: 61 ERSTDLEGPSYYVLPVHVPATASVHPDRYGRPYMSLGLKLNQNVLQSLLRDLPENL-LPT 119 + +EGPSY+V+P +PAT SV + GRPY+S+ L+L+Q VL LL+D P + Sbjct: 61 RQMVPMEGPSYFVIPTEMPATGSVRQAKNGRPYLSVALQLDQKVLLDLLKDTPNTVAFKN 120 Query: 120 ASGHFAACEMDIEFMEAWLRLLRLSKTSRDIPALAPAYEREILYRVLMGPQGWYLRQFGL 179 + F+AC EF+E WLR+LRL KT I ALAPAYEREILY VL+GP+GW LRQ Sbjct: 121 DTDEFSACPATPEFLEVWLRMLRLMKTPEHIAALAPAYEREILYHVLIGPEGWRLRQLFQ 180 Query: 180 RESNLSKISEIVKWFRSNFMKPIDIGEMASKSGMAINTFHRQFKRATGLSPIQFQKQLRL 239 S I + ++W R +F +I ++A+K+ M I TFHRQFK TGLSPIQFQKQLRL Sbjct: 181 SHQKGSSIHQSIQWVRQHFTHSFEIEDLANKACMGITTFHRQFKSITGLSPIQFQKQLRL 240 Query: 240 LEARNLIAFEGYPVASAAYHVGYQSPSQFNREYSRFFGSSPARDTENLR 288 LEAR L+ + GY V AA VGY+S SQFNREY+RFFG+SPARDT+ L+ Sbjct: 241 LEARKLLTYSGYSVTDAALDVGYESTSQFNREYTRFFGASPARDTKRLK 289 >B0S9N6.1 B0S9N6_LEPBA Transcription regulator Length = 295 Score = 325 bits (832), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 154/289 (53%), Positives = 202/289 (69%), Gaps = 1/289 (0%) Query: 1 MNNVLDEIIDLMKGAGTRQIETGVPGLSMIKGDIPAHQLAALYEPMIGFTVQGTKILSIG 60 M +++EI +L A T+ TG+P + MI+G++P HQLAA+YEP++G VQG K +SIG Sbjct: 1 MQKLVNEIAELCCSATTKPTLTGIPRVLMIQGEVPEHQLAAVYEPLVGLVVQGGKTISIG 60 Query: 61 ERSTDLEGPSYYVLPVHVPATASVHPDRYGRPYMSLGLKLNQNVLQSLLRDLPENL-LPT 119 + +EGPSY+V+P +PAT SV + GRPY+S+ L+L+Q VL LL+D P + Sbjct: 61 RQMVPMEGPSYFVIPTEMPATGSVRQAKNGRPYLSVALQLDQKVLLDLLKDTPNTVAFKN 120 Query: 120 ASGHFAACEMDIEFMEAWLRLLRLSKTSRDIPALAPAYEREILYRVLMGPQGWYLRQFGL 179 + F+AC EF+E WLR+LRL KT I ALAPAYEREILY VL+GP+GW LRQ Sbjct: 121 DTDEFSACPATPEFLEVWLRMLRLMKTPEHIAALAPAYEREILYHVLIGPEGWRLRQLFQ 180 Query: 180 RESNLSKISEIVKWFRSNFMKPIDIGEMASKSGMAINTFHRQFKRATGLSPIQFQKQLRL 239 S I + ++W R +F +I ++A+K+ M I TFHRQFK TGLSPIQFQKQLRL Sbjct: 181 SHQKGSSIHQSIQWVRQHFTHSFEIEDLANKACMGITTFHRQFKSITGLSPIQFQKQLRL 240 Query: 240 LEARNLIAFEGYPVASAAYHVGYQSPSQFNREYSRFFGSSPARDTENLR 288 LEAR L+ + GY V AA VGY+S SQFNREY+RFFG+SPARDT+ L+ Sbjct: 241 LEARKLLTYSGYSVTDAALDVGYESTSQFNREYTRFFGASPARDTKRLK 289 >Q1MBK7.1 Q1MBK7_RHIL3 Putative AraC family transcriptional regulator Length = 296 Score = 270 bits (689), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 132/293 (45%), Positives = 191/293 (65%), Gaps = 5/293 (1%) Query: 1 MNNVLDEIIDLMKGAGTRQIETGVPGLSMIKGDIPAHQLAALYEPMIGFTVQGTKILSIG 60 M +L+E+ L A R ETG+PG+ M+KG+IP H+L A+YEPM+ + G+K L+I Sbjct: 1 MQTMLEEMRRLTAHAENRPTETGIPGILMVKGEIPEHKLGAVYEPMVNLILDGSKTLTIA 60 Query: 61 ERSTDLEGPSYYVLPVHVPATASVHPDRYGRPYMSLGLKLNQNVLQSLLRDLP-ENLLPT 119 + + SY+V+ + VPAT V RPY+ + L L+ + +LL DLP ++ Sbjct: 61 GQDYYYDPASYFVISIDVPATGMVQQSGPDRPYLGVSLSLDPAKVAALLLDLPPQSYQEG 120 Query: 120 ASGHFAACEMDIEFMEAWLRLLRLSKTSRDIPALAPAYEREILYRVLMGPQGWYLRQFGL 179 SG ++ C M E + AWLR+L+L + +DIPALAPAYEREILYRVL GPQGW LR Sbjct: 121 QSGGYSVCRMTPELLGAWLRMLQLMERPQDIPALAPAYEREILYRVLQGPQGWMLRDIAA 180 Query: 180 RESNLSKISEIVKWFRSNFMKPIDIGEMASKSGMAINTFHRQFKRATGLSPIQFQKQLRL 239 +S LS+I ++W R ++ + +++ ++A+ + M+++ FHR FK T +SPIQFQK++RL Sbjct: 181 PDSALSRIRLAIRWVREHYAEAVEVEKLAALTAMSVSAFHRHFKAVTAMSPIQFQKRIRL 240 Query: 240 LEARNLIAFEGYPVASAAYHVGYQSPSQFNREYSRFFGSSPARDT----ENLR 288 L+AR L+ + +S AY VGY+S SQF REY+RFFG PARD EN+R Sbjct: 241 LQARQLLISQSGNASSVAYSVGYESASQFTREYARFFGQPPARDASLIRENIR 293 >B0IUP3.1 B0IUP3_RHILT AraC-type transcriptional regulator domain protein Length = 296 Score = 266 bits (679), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 130/289 (44%), Positives = 188/289 (65%), Gaps = 1/289 (0%) Query: 1 MNNVLDEIIDLMKGAGTRQIETGVPGLSMIKGDIPAHQLAALYEPMIGFTVQGTKILSIG 60 M +L+E+ L A R ETG+PG+ M+KG+IP H+L A+YEPM+ + G+K L+I Sbjct: 1 MQTMLEEMRRLTAHAENRPTETGIPGILMVKGEIPEHKLGAVYEPMVNLILDGSKTLTIA 60 Query: 61 ERSTDLEGPSYYVLPVHVPATASVHPDRYGRPYMSLGLKLNQNVLQSLLRDLP-ENLLPT 119 + + SY+V+ + VPAT V RPY+ + L L+ + +LL DLP ++ Sbjct: 61 GQDYYYDPASYFVISIDVPATGMVQQAGPDRPYIGVSLSLDPVKVAALLLDLPPQSYQEG 120 Query: 120 ASGHFAACEMDIEFMEAWLRLLRLSKTSRDIPALAPAYEREILYRVLMGPQGWYLRQFGL 179 SG ++ C M E AWLR+L+L + +DIPALAPAYEREILYRVL GPQGW LR Sbjct: 121 QSGGYSVCRMTPELPGAWLRMLQLMERPQDIPALAPAYEREILYRVLQGPQGWMLRDIAA 180 Query: 180 RESNLSKISEIVKWFRSNFMKPIDIGEMASKSGMAINTFHRQFKRATGLSPIQFQKQLRL 239 +S LS+I ++W R ++ + +++ ++A+ + M+++ FHR FK T +SPIQFQK++RL Sbjct: 181 PDSALSRIRLAIRWVREHYAEAVEVEKLAALTAMSVSAFHRHFKAVTAMSPIQFQKRIRL 240 Query: 240 LEARNLIAFEGYPVASAAYHVGYQSPSQFNREYSRFFGSSPARDTENLR 288 L+AR L+ + +S AY VGY+S SQF REY+RFFG PARD +R Sbjct: 241 LQARQLLISQSGNASSVAYSVGYESVSQFTREYARFFGQPPARDASLMR 289 >Q4ZQJ4.1 Q4ZQJ4_PSEU2 Helix-turn-helix, AraC type:AraC-type transcriptional regulator, N-terminal Length = 302 Score = 265 bits (677), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 125/301 (41%), Positives = 199/301 (66%), Gaps = 5/301 (1%) Query: 1 MNNVLDEIIDLMKGAGTRQIETGVPGLSMIKGDIPAHQLAALYEPMIGFTVQGTKILSIG 60 M+N L+E+ L A R+ ETG+P ++M++G IP H LAA+Y+PMI +QG+K +++G Sbjct: 1 MDNQLNELRLLAAKAENRRTETGIPRVAMVQGKIPEHMLAAVYDPMINVILQGSKHMTVG 60 Query: 61 ERSTDLEGPSYYVLPVHVPATASVHPDRYGRPYMSLGLKLNQNVLQSLLRDLPE--NLLP 118 + + + + +Y+V+ + +PA SVHP R G PY+++ L L+ VL +L DLP+ + L Sbjct: 61 DSTLEYDPATYFVMSIDLPAVGSVHPARSGEPYLAVSLTLDPAVLSTLFADLPKPASRLE 120 Query: 119 TASGHFAACEMDIEFMEAWLRLLRLSKTSRDIPALAPAYEREILYRVLMGPQGWYLRQFG 178 G F+ M E M+AW+R+LRL I ALAP YEREI++RVL GP GW LR+ Sbjct: 121 NRPG-FSVAPMTTELMDAWVRMLRLMGDPDAIAALAPVYEREIIFRVLQGPHGWMLREIA 179 Query: 179 LRESNLSKISEIVKWFRSNFMKPIDIGEMASKSGMAINTFHRQFKRATGLSPIQFQKQLR 238 ++ +++++ ++W R +F +P+ + +A ++ M+++ FHR FK T LSP+Q+QK++R Sbjct: 180 ASDTAMARVNMSIQWIRRDFAEPLGVERLAERASMSVSAFHRHFKAVTNLSPLQYQKRVR 239 Query: 239 LLEARNLIAFEGYPVASAAYHVGYQSPSQFNREYSRFFGSSPARDTENLRRIESTRISPL 298 LL AR L+ V +AA+ VGY+S +QF+R+YSR FG PA+D R +E+TR + + Sbjct: 240 LLHARTLMVANAKSVMAAAFEVGYESATQFSRDYSRVFGLPPAQDAG--RILEATRGAAV 297 Query: 299 N 299 N Sbjct: 298 N 298 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,732,042,458 Number of extensions: 69171132 Number of successful extensions: 166674 Number of sequences better than 1.0e-05: 1432 Number of HSP's gapped: 167868 Number of HSP's successfully gapped: 1432 Length of query: 299 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 164 Effective length of database: 1,788,859,178 Effective search space: 293372905192 Effective search space used: 293372905192 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)