BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0535.0020.p
         (55 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A8UBP3.1 A8UBP3_9LACT Putative uncharacterized protein                 99   1e-19
Q2BE35.1 Q2BE35_9BACI Probable permease protein of ABC transport...    96   7e-19
C2XKV2.1 C2XKV2_BACCE ABC-type multidrug transport system ATPase...    95   2e-18
A9KRH9.1 A9KRH9_CLOPH ABC transporter related                          94   6e-18
C3RIU8.1 C3RIU8_9MOLU Putative uncharacterized protein                 90   5e-17

>A8UBP3.1 A8UBP3_9LACT Putative uncharacterized protein
          Length = 592

 Score = 99.0 bits (245), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/54 (85%), Positives = 51/54 (94%)

Query: 2   LIVAQRIGTIKDADKIIVLEEGRIAGMGTHEELMDTCSVYQEIAYSQLSKEELA 55
           LIVAQRIGTI+DADKIIVLEEG+I G+GTH+ELM TC VYQ+IAYSQLSKEELA
Sbjct: 537 LIVAQRIGTIRDADKIIVLEEGKIVGIGTHQELMQTCEVYQDIAYSQLSKEELA 590


>Q2BE35.1 Q2BE35_9BACI Probable permease protein of ABC transporter system
          Length = 585

 Score = 96.3 bits (238), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 43/53 (81%), Positives = 51/53 (96%)

Query: 2   LIVAQRIGTIKDADKIIVLEEGRIAGMGTHEELMDTCSVYQEIAYSQLSKEEL 54
           LIVAQRIGTIKDAD+I+VL++G++ G+GTHEEL+D CSVYQEIAYSQLSKEEL
Sbjct: 530 LIVAQRIGTIKDADRIVVLDQGKVVGIGTHEELLDGCSVYQEIAYSQLSKEEL 582


>C2XKV2.1 C2XKV2_BACCE ABC-type multidrug transport system ATPase and
           permease component
          Length = 553

 Score = 95.1 bits (235), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/53 (83%), Positives = 48/53 (90%)

Query: 2   LIVAQRIGTIKDADKIIVLEEGRIAGMGTHEELMDTCSVYQEIAYSQLSKEEL 54
           LIVAQRIGTIKDAD+IIVLEEG + G GTHE+LMD+C  YQEIAYSQLSKEEL
Sbjct: 496 LIVAQRIGTIKDADRIIVLEEGEVVGNGTHEQLMDSCETYQEIAYSQLSKEEL 548


>A9KRH9.1 A9KRH9_CLOPH ABC transporter related
          Length = 585

 Score = 93.6 bits (231), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 42/54 (77%), Positives = 50/54 (92%)

Query: 2   LIVAQRIGTIKDADKIIVLEEGRIAGMGTHEELMDTCSVYQEIAYSQLSKEELA 55
           L+VAQRIGT++DADKI+VL+EG I G+GTHE+LM TC VYQ+IAYSQLSKEELA
Sbjct: 532 LVVAQRIGTVRDADKIVVLDEGGIVGIGTHEQLMKTCEVYQQIAYSQLSKEELA 585


>C3RIU8.1 C3RIU8_9MOLU Putative uncharacterized protein
          Length = 585

 Score = 90.1 bits (222), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 43/53 (81%), Positives = 47/53 (88%)

Query: 2   LIVAQRIGTIKDADKIIVLEEGRIAGMGTHEELMDTCSVYQEIAYSQLSKEEL 54
           LIVAQRIGTI+DADKIIVL+EG I GMGTHE+LM  C VYQ+IA SQLSKEEL
Sbjct: 532 LIVAQRIGTIRDADKIIVLDEGVIVGMGTHEDLMKNCQVYQQIARSQLSKEEL 584


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.133    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 282,219,812
Number of extensions: 7726751
Number of successful extensions: 50431
Number of sequences better than 1.0e-05: 945
Number of HSP's gapped: 50477
Number of HSP's successfully gapped: 945
Length of query: 55
Length of database: 3,060,696,203
Length adjustment: 28
Effective length of query: 27
Effective length of database: 2,796,907,783
Effective search space: 75516510141
Effective search space used: 75516510141
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)