BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0535.0017.p (351 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A9KT20.1 A9KT20_CLOPH Sensor protein EC=2.7.13.3 287 1e-75 C0CWP7.1 C0CWP7_9CLOT Sensor protein EC=2.7.13.3 269 4e-70 A8RTH8.1 A8RTH8_9CLOT Sensor protein EC=2.7.13.3 268 7e-70 A6TPG4.1 A6TPG4_ALKMQ Sensor protein EC=2.7.13.3 261 5e-68 C5EPX4.1 C5EPX4_9FIRM Integral membrane sensor signal transducti... 258 8e-67 >A9KT20.1 A9KT20_CLOPH Sensor protein EC=2.7.13.3 Length = 349 Score = 287 bits (734), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 143/271 (52%), Positives = 187/271 (69%) Query: 77 SRSMVKTIREFIEATQRLAAGDFSTRLYLKSPPEYRILSENFNRMAEELGSIEILRTDFV 136 SR + IRE + A RLA GDFS R+ L+ P E++ L+ +FN MAEELGSIEILR+DF+ Sbjct: 76 SRIPLSPIREIVSAADRLAEGDFSVRVKLRGPKEFQKLNRSFNHMAEELGSIEILRSDFI 135 Query: 137 NNFSHEFKTPIVSIKGFAEILKYDDLSEEERDEYLDIVIEESARLASLASNVLELSKIET 196 NNFSHEFKTPIVS++GFA++LKY+DL++EE+DEYLDI+I ES RL+ LA+NVL LSKIE Sbjct: 136 NNFSHEFKTPIVSMRGFAKMLKYNDLTKEEKDEYLDIIINESDRLSELATNVLNLSKIEN 195 Query: 197 QTILTDKQEVNVGEQIRQCVXXXXXXXXXXXXXXNLGLHDYSLSGNKEMLNQVWLNLLEN 256 QTI+TDK NV EQIR+ V + L GN+E+L QVW+NLL+N Sbjct: 196 QTIVTDKTRFNVSEQIRRVVVLLEKRWIEKNIEIAFDCDEIFLYGNEELLKQVWINLLDN 255 Query: 257 AVKFTPEQGTVTIEMKRTANSLEMVFSNTGSVIDPETLPRIFDKFYQADTSHATVGNGLG 316 A+KF+ + I++ + +L++ ++ GS + +T RIFDKFYQ DTSHAT GNGLG Sbjct: 256 AIKFSVPDSIIDIQVVQELQNLKISITDQGSGMTDDTRNRIFDKFYQGDTSHATKGNGLG 315 Query: 317 LTIVQRIVNLHGGTVACESGPLQGTVFIVTL 347 LTI ++IV LH G + GT F V L Sbjct: 316 LTIAKKIVQLHDGKIKITKSDKSGTTFEVIL 346 >C0CWP7.1 C0CWP7_9CLOT Sensor protein EC=2.7.13.3 Length = 350 Score = 269 bits (687), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 135/273 (49%), Positives = 182/273 (66%) Query: 76 ASRSMVKTIREFIEATQRLAAGDFSTRLYLKSPPEYRILSENFNRMAEELGSIEILRTDF 135 ASR +K +R+ I A LA G+F R++L E+ LSE+FNRMA+EL + E+LR+DF Sbjct: 75 ASRVPLKPVRQLIAAINELADGNFHVRIHLDLTQEFVKLSESFNRMAQELENTELLRSDF 134 Query: 136 VNNFSHEFKTPIVSIKGFAEILKYDDLSEEERDEYLDIVIEESARLASLASNVLELSKIE 195 +NNFSHEFKTPIVS++GFA+ILK D L+ EERDEYLDI+I ES RLA LA+NVL LSK+E Sbjct: 135 INNFSHEFKTPIVSLRGFAKILKSDTLTREERDEYLDIIISESNRLAQLATNVLNLSKVE 194 Query: 196 TQTILTDKQEVNVGEQIRQCVXXXXXXXXXXXXXXNLGLHDYSLSGNKEMLNQVWLNLLE 255 +ILT+ + E+IRQ + L L + SGNK++LNQ+W+NL++ Sbjct: 195 NTSILTNISAFELSEEIRQAILLLETKWQNKELEWILELDEIVYSGNKDLLNQMWINLID 254 Query: 256 NAVKFTPEQGTVTIEMKRTANSLEMVFSNTGSVIDPETLPRIFDKFYQADTSHATVGNGL 315 NAVKF+P+ G V I++ + + G +D + + IFD+FYQ D SH GNG+ Sbjct: 255 NAVKFSPQGGKVKIKLHADGPQVRFQIWDNGCGMDQDIIGHIFDRFYQGDLSHTAEGNGI 314 Query: 316 GLTIVQRIVNLHGGTVACESGPLQGTVFIVTLP 348 GLT+V+RI LHGG+V+ S P GT F V LP Sbjct: 315 GLTVVKRIAELHGGSVSVYSEPGIGTNFKVILP 347 >A8RTH8.1 A8RTH8_9CLOT Sensor protein EC=2.7.13.3 Length = 355 Score = 268 bits (684), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 130/272 (47%), Positives = 185/272 (68%) Query: 77 SRSMVKTIREFIEATQRLAAGDFSTRLYLKSPPEYRILSENFNRMAEELGSIEILRTDFV 136 SR +K IR+ IEA +LA G+F R++L E+ LSE+FNRMA+EL + E+LR+DF+ Sbjct: 76 SRIPLKPIRDLIEAINQLADGNFKVRIHLDLNREFERLSESFNRMAQELENTELLRSDFI 135 Query: 137 NNFSHEFKTPIVSIKGFAEILKYDDLSEEERDEYLDIVIEESARLASLASNVLELSKIET 196 NNFSHEFKTPIVS++GFA+ILK D L++EERDEYLDI+I ES RL+ L++NVL LSKIE Sbjct: 136 NNFSHEFKTPIVSLRGFAKILKNDRLTKEERDEYLDIIISESNRLSQLSTNVLNLSKIEK 195 Query: 197 QTILTDKQEVNVGEQIRQCVXXXXXXXXXXXXXXNLGLHDYSLSGNKEMLNQVWLNLLEN 256 +IL+D + ++ E++RQ V + + + GNK +LNQVW+NL++N Sbjct: 196 MSILSDMESFDLSEEVRQSVLLLESKWQKKDLELFIDMDELEYRGNKALLNQVWINLIDN 255 Query: 257 AVKFTPEQGTVTIEMKRTANSLEMVFSNTGSVIDPETLPRIFDKFYQADTSHATVGNGLG 316 A+KF+P+ G + +++ R + + + G +D ET IFD+FYQ D+SH GNG+G Sbjct: 256 AIKFSPQNGKIKLKLHRKKDQVVFQILDNGCGMDEETKNHIFDRFYQGDSSHTAEGNGIG 315 Query: 317 LTIVQRIVNLHGGTVACESGPLQGTVFIVTLP 348 LT+V++IV+LH G + S GT F V LP Sbjct: 316 LTVVEKIVHLHKGQIRVVSEAGIGTTFTVNLP 347 >A6TPG4.1 A6TPG4_ALKMQ Sensor protein EC=2.7.13.3 Length = 349 Score = 261 bits (668), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 129/272 (47%), Positives = 180/272 (66%) Query: 77 SRSMVKTIREFIEATQRLAAGDFSTRLYLKSPPEYRILSENFNRMAEELGSIEILRTDFV 136 SR MVK +R IEA + +A GDF + + PE L+ +FN+MA EL IE+LRTDF+ Sbjct: 68 SRWMVKPVRNLIEAIEDVAKGDFGVSVKGSNIPELESLAASFNKMARELAGIEMLRTDFI 127 Query: 137 NNFSHEFKTPIVSIKGFAEILKYDDLSEEERDEYLDIVIEESARLASLASNVLELSKIET 196 NNFSHEFKTPIVSIKGFA++LK D L+ EE EYLDI+I+ES RLA L++NVL LSK+++ Sbjct: 128 NNFSHEFKTPIVSIKGFAKLLKEDGLTSEEAQEYLDIIIQESQRLADLSTNVLNLSKVQS 187 Query: 197 QTILTDKQEVNVGEQIRQCVXXXXXXXXXXXXXXNLGLHDYSLSGNKEMLNQVWLNLLEN 256 ++ +K+ + EQIRQ + ++ L +++ N +L Q+W+NLL+N Sbjct: 188 TEVIREKEIYALDEQIRQAILILEPKWSTKNLSVDVDLESININNNAPLLQQIWVNLLDN 247 Query: 257 AVKFTPEQGTVTIEMKRTANSLEMVFSNTGSVIDPETLPRIFDKFYQADTSHATVGNGLG 316 A+KFT G + + ++R +S+ + G +D ET IFDKFYQ DTSHA +GNGLG Sbjct: 248 AIKFTDNGGKLQVSLRRINSSIRFCLRDNGHGMDEETKQHIFDKFYQGDTSHAIIGNGLG 307 Query: 317 LTIVQRIVNLHGGTVACESGPLQGTVFIVTLP 348 LT+V++IV L G + ES +G+ FIV LP Sbjct: 308 LTLVKKIVILCNGHIEVESSLGKGSAFIVFLP 339 >C5EPX4.1 C5EPX4_9FIRM Integral membrane sensor signal transduction histidine kinase Length = 363 Score = 258 bits (658), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 129/274 (47%), Positives = 187/274 (68%), Gaps = 2/274 (0%) Query: 76 ASRSMVKTIREFIEATQRLAAGDFSTRLYLKSPPEYRILSENFNRMAEELGSIEILRTDF 135 ASR ++ IR+ I+A +LA G+F R++L E+ LSE+FN MA+EL + E+LR+DF Sbjct: 75 ASRIPLRPIRDLIDAINQLADGNFHVRVHLDLTHEFVRLSESFNSMAQELENTELLRSDF 134 Query: 136 VNNFSHEFKTPIVSIKGFAEILKYDDLSEEERDEYLDIVIEESARLASLASNVLELSKIE 195 +NNFSHEFKTPIVS++GFA++LK DLS+E+RDEYLDI+I ES RL+ LASNVL LSKIE Sbjct: 135 INNFSHEFKTPIVSLRGFAKLLKNPDLSQEDRDEYLDIIIHESTRLSQLASNVLNLSKIE 194 Query: 196 TQTILTDKQEVNVGEQIRQCVXXXXXXXXXXXXXXNLGLHDYSLSGNKEMLNQVWLNLLE 255 +IL+D + ++ E++RQ + + + + S G++ +LNQVW+NL++ Sbjct: 195 NMSILSDMERFDLTEEVRQSILLLESKWQKKELELIIDMDEVSYHGSRNLLNQVWINLID 254 Query: 256 NAVKFTPEQGTVTIEM-KRTANSLEMVFSNTGSVIDPETLPRIFDKFYQADTSHATVGNG 314 NAVKF+P++G + I++ ++ N++ + N G + + IFD+FYQ D SH T GNG Sbjct: 255 NAVKFSPDRGKIKIKLHQQDGNTIFQIIDN-GCGMSQDMRLHIFDRFYQGDPSHTTEGNG 313 Query: 315 LGLTIVQRIVNLHGGTVACESGPLQGTVFIVTLP 348 +GLT+V +IV LH G + S GT F VTLP Sbjct: 314 IGLTVVDKIVRLHKGHITVGSEEGIGTTFTVTLP 347 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,639,545,953 Number of extensions: 58249471 Number of successful extensions: 278651 Number of sequences better than 1.0e-05: 25001 Number of HSP's gapped: 237957 Number of HSP's successfully gapped: 25240 Length of query: 351 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 215 Effective length of database: 1,779,438,163 Effective search space: 382579205045 Effective search space used: 382579205045 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)