BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0535.0016.p (238 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A9KT19.1 A9KT19_CLOPH Two component transcriptional regulator, w... 324 5e-87 A8RTH7.1 A8RTH7_9CLOT Putative uncharacterized protein 320 6e-86 A9KRH7.1 A9KRH7_CLOPH Two component transcriptional regulator, w... 314 3e-84 C5EPX5.1 C5EPX5_9FIRM Two component transcriptional regulator 312 1e-83 C3RIU6.1 C3RIU6_9MOLU Two-component system transcriptional regul... 293 7e-78 >A9KT19.1 A9KT19_CLOPH Two component transcriptional regulator, winged helix family Length = 225 Score = 324 bits (830), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 152/223 (68%), Positives = 183/223 (82%) Query: 12 MIHILVVEDDRHARRLLEAVLKREGYLVSTAEDGARAMDVLDQQHIDLIVLDIMMPNMDG 71 M ILVVEDD++ RL++AVL GY V A++G A++++D+QHIDLIVLD+MMP MDG Sbjct: 1 MFQILVVEDDKNTARLMKAVLMHAGYEVFCADNGVSALELMDKQHIDLIVLDVMMPEMDG 60 Query: 72 YEFAKELRDAGSLIPVLMATAKHLPEDKKKGFRLGIDDYMTKPVDTEEMLLRIGALLRRS 131 YEF K+LR + P+LM TAK LPEDK KGF G DDYM KPV+ +EMLLRI ALLRR+ Sbjct: 61 YEFTKQLRGSNDNTPILMVTAKQLPEDKCKGFLAGTDDYMVKPVNEDEMLLRIKALLRRA 120 Query: 132 QIASARKLVVGNVVLDYDALTVTRGEEKQTLPQKEFYLLYKLLSYPDRIFTRIQLMDEIW 191 +I + KL +G V LDYDALTV++ E QTLPQKEFYLLYKLLSYPDRIFTRIQLMDEIW Sbjct: 121 KIVNEHKLHIGKVTLDYDALTVSKDGESQTLPQKEFYLLYKLLSYPDRIFTRIQLMDEIW 180 Query: 192 GMESESSDTTVNVHINRLRKRFEGYPEFELVSVRGLGYKAVRQ 234 GMESE+ DTTVNVHINRLRKRFEGY EF+++++RG+GYKAV+ Sbjct: 181 GMESETVDTTVNVHINRLRKRFEGYSEFDIIAIRGIGYKAVKN 223 >A8RTH7.1 A8RTH7_9CLOT Putative uncharacterized protein Length = 224 Score = 320 bits (820), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 149/223 (66%), Positives = 181/223 (81%) Query: 12 MIHILVVEDDRHARRLLEAVLKREGYLVSTAEDGARAMDVLDQQHIDLIVLDIMMPNMDG 71 M ILV EDD++ RRL+EAVLK GY A DG A+ +LD H+DL++LDIMMP MDG Sbjct: 1 MFQILVAEDDKNTRRLMEAVLKEHGYHPILACDGLEALKLLDTHHVDLVILDIMMPGMDG 60 Query: 72 YEFAKELRDAGSLIPVLMATAKHLPEDKKKGFRLGIDDYMTKPVDTEEMLLRIGALLRRS 131 YEF ++LR +P+LM TAK LPEDK+KGF +G DDYMTKPVD EEM+LRI ALLRR+ Sbjct: 61 YEFTRQLRATDYTLPILMVTAKQLPEDKRKGFIVGTDDYMTKPVDEEEMILRIRALLRRA 120 Query: 132 QIASARKLVVGNVVLDYDALTVTRGEEKQTLPQKEFYLLYKLLSYPDRIFTRIQLMDEIW 191 QI + R++ + +V LDYD+LTV+RG+E QTLP+KEFYLLYKLLSYP +IFTRIQLMDEIW Sbjct: 121 QIVNERRITIADVCLDYDSLTVSRGDESQTLPRKEFYLLYKLLSYPGKIFTRIQLMDEIW 180 Query: 192 GMESESSDTTVNVHINRLRKRFEGYPEFELVSVRGLGYKAVRQ 234 GMES+S D T+NVHINRLRKRFE YPEF + ++RGLGYKAV+ Sbjct: 181 GMESQSDDNTINVHINRLRKRFEDYPEFTIETIRGLGYKAVKH 223 >A9KRH7.1 A9KRH7_CLOPH Two component transcriptional regulator, winged helix family Length = 224 Score = 314 bits (805), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 147/222 (66%), Positives = 184/222 (82%) Query: 12 MIHILVVEDDRHARRLLEAVLKREGYLVSTAEDGARAMDVLDQQHIDLIVLDIMMPNMDG 71 MIHILVV+DD++ RR ++AVL+ E Y+V TA +G A+D+LD HIDL+VLDIMMP MDG Sbjct: 1 MIHILVVDDDKNTRRFMKAVLEEEQYIVFTASNGVEALDILDTTHIDLVVLDIMMPKMDG 60 Query: 72 YEFAKELRDAGSLIPVLMATAKHLPEDKKKGFRLGIDDYMTKPVDTEEMLLRIGALLRRS 131 YEF + LR + +P+LM +AK LP D+KKGF++GIDD+MTKPVD EEM+LRI ALLRR+ Sbjct: 61 YEFTEILRSVQNELPILMVSAKQLPADRKKGFQVGIDDFMTKPVDAEEMVLRIKALLRRA 120 Query: 132 QIASARKLVVGNVVLDYDALTVTRGEEKQTLPQKEFYLLYKLLSYPDRIFTRIQLMDEIW 191 +I S RK+++GNVVLD D+L+VTR E Q LPQKEF LL+KLLSYP +IFTRIQLMDEIW Sbjct: 121 KITSERKIMIGNVVLDEDSLSVTREGETQVLPQKEFQLLFKLLSYPGKIFTRIQLMDEIW 180 Query: 192 GMESESSDTTVNVHINRLRKRFEGYPEFELVSVRGLGYKAVR 233 G ES+S TV VH+ RLR+RFEG+PEF++ SVRGLGYKAV+ Sbjct: 181 GTESDSGWETVTVHVGRLRRRFEGWPEFQIDSVRGLGYKAVK 222 >C5EPX5.1 C5EPX5_9FIRM Two component transcriptional regulator Length = 224 Score = 312 bits (800), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 148/223 (66%), Positives = 176/223 (78%) Query: 12 MIHILVVEDDRHARRLLEAVLKREGYLVSTAEDGARAMDVLDQQHIDLIVLDIMMPNMDG 71 M IL+ EDD++ R+L+EAVLK G+ A G A+ +LD HIDL VLDIMMP MDG Sbjct: 1 MFQILIAEDDKNTRKLMEAVLKSNGFNPIPASSGEEALKLLDSHHIDLAVLDIMMPGMDG 60 Query: 72 YEFAKELRDAGSLIPVLMATAKHLPEDKKKGFRLGIDDYMTKPVDTEEMLLRIGALLRRS 131 YE +LR +P+LM TAK LPEDK+KGF G DDYMTKPVD EEM+LRI ALLRR+ Sbjct: 61 YELTTQLRSMDYNLPILMVTAKLLPEDKRKGFMAGTDDYMTKPVDEEEMVLRIRALLRRA 120 Query: 132 QIASARKLVVGNVVLDYDALTVTRGEEKQTLPQKEFYLLYKLLSYPDRIFTRIQLMDEIW 191 QIAS RK+ +GNV+LDYD+L+VTR QTLP+KEFYLLYKLLSYP +IFTRIQLMDEIW Sbjct: 121 QIASERKITIGNVILDYDSLSVTRDGSSQTLPRKEFYLLYKLLSYPGKIFTRIQLMDEIW 180 Query: 192 GMESESSDTTVNVHINRLRKRFEGYPEFELVSVRGLGYKAVRQ 234 G+ESE+ D T+NVHINRLRKRFE YPEF + ++RGLGYKAV+ Sbjct: 181 GIESETDDNTINVHINRLRKRFEHYPEFTIETIRGLGYKAVKH 223 >C3RIU6.1 C3RIU6_9MOLU Two-component system transcriptional regulator Length = 226 Score = 293 bits (751), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 136/223 (60%), Positives = 177/223 (79%) Query: 12 MIHILVVEDDRHARRLLEAVLKREGYLVSTAEDGARAMDVLDQQHIDLIVLDIMMPNMDG 71 M HILVV+DD++ R+L++AVL+ E Y+V A DG A+ VLD+ HIDL++LD+MMP MDG Sbjct: 1 MFHILVVDDDKNTRQLIKAVLETENYIVIGATDGEDALKVLDRSHIDLVILDVMMPKMDG 60 Query: 72 YEFAKELRDAGSLIPVLMATAKHLPEDKKKGFRLGIDDYMTKPVDTEEMLLRIGALLRRS 131 YEF + LR + +P+LM +AK LP D+ KGF +G DD+MTKP D EE+LLR+ ALLRR+ Sbjct: 61 YEFTEILRRVQNELPILMVSAKQLPADRNKGFIVGTDDFMTKPFDEEELLLRVKALLRRA 120 Query: 132 QIASARKLVVGNVVLDYDALTVTRGEEKQTLPQKEFYLLYKLLSYPDRIFTRIQLMDEIW 191 +I + ++++G V+LDYD+LTV R Q LPQKEF LLYKLLSYP +IFTRIQLMDEIW Sbjct: 121 KIVNEHRIIIGEVILDYDSLTVKRKNTCQELPQKEFMLLYKLLSYPGKIFTRIQLMDEIW 180 Query: 192 GMESESSDTTVNVHINRLRKRFEGYPEFELVSVRGLGYKAVRQ 234 G++S++ TV VH+ RLRKRFE +PEFE++SVRGLGYKAVR Sbjct: 181 GVDSDTGWETVTVHVARLRKRFEDWPEFEIISVRGLGYKAVRN 223 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.138 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,329,480,682 Number of extensions: 52048911 Number of successful extensions: 232212 Number of sequences better than 1.0e-05: 33526 Number of HSP's gapped: 204146 Number of HSP's successfully gapped: 33874 Length of query: 238 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 106 Effective length of database: 1,817,122,223 Effective search space: 192614955638 Effective search space used: 192614955638 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)