BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0535.0015.p (279 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DBZ9.1 B1DBZ9_9BACL Putative uncharacterized protein 224 8e-57 B3K8U8.1 B3K8U8_9BACI YheD 184 9e-45 B1D6A7.1 B1D6A7_9BACL YheD 171 9e-41 B3K957.1 B3K957_9BACI Putative uncharacterized protein 157 9e-37 B1DDG0.1 B1DDG0_9BACL Putative uncharacterized protein 134 9e-30 >B1DBZ9.1 B1DBZ9_9BACL Putative uncharacterized protein Length = 253 Score = 224 bits (570), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 116/261 (44%), Positives = 159/261 (60%), Gaps = 14/261 (5%) Query: 5 IRRISNKLTKTRVLARSQELKSRIPATKRMNQRVLQEMLQKYQMVYVKPCCGSLGQGVIR 64 I+ + +K KT VL S L+ IP+T+ N+ LQ ML +Y MVYVKP G+ G+GV+R Sbjct: 3 IQLVYSKWEKTNVLLHSPALREYIPSTRLFNKENLQLMLAEYGMVYVKPVNGTFGKGVMR 62 Query: 65 VEKTAGSSLRSKNSGNHAPGDKGTYRYQAGMQIHNFSDYDAAYQAIHKETRGKPYLVQKG 124 VE+ ++ KG Y+YQ I F + +Q++ K G+ YLVQ+G Sbjct: 63 VERLKQAA-------------KG-YKYQLNTTIRTFPTLELLHQSLAKRINGRRYLVQRG 108 Query: 125 IRLLLHKGRPFDIRVMVQRNLKGQWEATGVAGRVAHPLKVVTNGSQGGTIYPVEVLLTPY 184 I LL HK R FDIRVMVQRN WEATG+ GR+AHP KVVTN GGT E LL+ + Sbjct: 109 IDLLRHKNRRFDIRVMVQRNENNHWEATGIIGRLAHPAKVVTNYHNGGTPMSFERLLSSH 168 Query: 185 TSPEKRTALIAAMHDIGVKSARQLSTAYPGLQEIGVDLALDRNLKPWILEVNTAPDPCPF 244 SP ++ + I + A++L YPG++E+G+D+A+D+ +PWILEVNT PD F Sbjct: 169 QSPTQKMIYAMRLKQISLDIAKELEKHYPGIKELGIDIAIDQQQRPWILEVNTKPDAFIF 228 Query: 245 TKLKDRRMINRIVQYGKAYGR 265 KL+D+ M +I QY +YGR Sbjct: 229 RKLEDKSMFRKIYQYAVSYGR 249 >B3K8U8.1 B3K8U8_9BACI YheD Length = 270 Score = 184 bits (466), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 96/262 (36%), Positives = 156/262 (59%), Gaps = 7/262 (2%) Query: 5 IRRISNKLTKTRVLARSQELKSRIPATKRMNQRVLQEMLQKYQMVYVKPCCGSLGQGVIR 64 I+R+++K KT++L +++ L S +PAT+ + L++ML + +VY+KP G+ G GV+ Sbjct: 3 IQRVASKWAKTKILLKNKGLASYVPATRLYSLETLEDMLNTHTLVYIKPDRGTYGIGVMS 62 Query: 65 VEKTAGSSLRSKNSGNHAPGDKGTYRYQAGMQIHNFSDYDAAYQAIHKETRGKPYLVQKG 124 VE+ L S+ + D +Y + + F+ ++ ++ + +GK YLVQ+G Sbjct: 63 VEQ-----LHSQTADTDETTD-ASYMLRYDHKTEVFTSLESLHKTLSDLFQGKDYLVQQG 116 Query: 125 IRLLLHKGRPFDIRVMVQRNLKGQWEATGVAGRVAHPLKVVTNGSQGGTIYPVEVLLTPY 184 I LL HK RPFD+RV+ Q++ GQW +TG+ GRVA K++TN GG ++ + L+ + Sbjct: 117 IHLLRHKDRPFDLRVLTQKSPSGQWVSTGIIGRVAAKNKIITNHHSGGVVHHYKPLMLEH 176 Query: 185 TSPEKRTALIAAMHDIGVKSARQLSTAYPGLQEIGVDLALDRNLKPWILEVNTAPDPCPF 244 + E+ + ++ +GV A QL YP L+EIG+D+A+D WILEVNT P PF Sbjct: 177 MTAEEAGNIRRELNTLGVNVASQLQKTYPNLKEIGLDVAIDDRWNIWILEVNTKPALFPF 236 Query: 245 TK-LKDRRMINRIVQYGKAYGR 265 K KD + ++ +Y AYGR Sbjct: 237 KKFFKDPSIYKQVEKYANAYGR 258 >B1D6A7.1 B1D6A7_9BACL YheD Length = 249 Score = 171 bits (432), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 97/260 (37%), Positives = 138/260 (53%), Gaps = 17/260 (6%) Query: 6 RRISNKLTKTRVLARSQELKSRIPATKRMNQRVLQEMLQKYQMVYVKPCCGSLGQGVIRV 65 R + NK KT VL + ++S +P T ++ L+ ML+ YQMVYVKP GS G GV+RV Sbjct: 5 RGLYNKWAKTIVLNQKASIRSHVPHTLLFSESSLKSMLRLYQMVYVKPNRGSHGVGVMRV 64 Query: 66 EKTAGSSLRSKNSGNHAPGDKGTYRYQAGMQIHNFSDYDAAYQAIHKETRGKPYLVQKGI 125 E GTY YQ G + + ++ + +G Y++Q+GI Sbjct: 65 EY-----------------RNGTYSYQLGAKRRRNLTWAQLVASLTYKIQGAKYIIQRGI 107 Query: 126 RLLLHKGRPFDIRVMVQRNLKGQWEATGVAGRVAHPLKVVTNGSQGGTIYPVEVLLTPYT 185 L K R +D+RV +Q N G+W+ TG+ RVA VTNG+QG IY ++ + Sbjct: 108 HLSRFKNRIYDLRVELQLNEYGRWQITGMLARVAQQGMAVTNGAQGAEIYTFSSVIASHG 167 Query: 186 SPEKRTALIAAMHDIGVKSARQLSTAYPGLQEIGVDLALDRNLKPWILEVNTAPDPCPFT 245 E + + ++ + ++SA L YP L E+G D+ALD+ L PWILEVNT P+ PF Sbjct: 168 GAELVRRVTSQLNSLCIESAHMLKAKYPFLNELGFDIALDQQLHPWILEVNTTPEAIPFK 227 Query: 246 KLKDRRMINRIVQYGKAYGR 265 KL R M NRI+ K R Sbjct: 228 KLPTRTMYNRILHLRKLNAR 247 >B3K957.1 B3K957_9BACI Putative uncharacterized protein Length = 263 Score = 157 bits (397), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 90/262 (34%), Positives = 135/262 (51%), Gaps = 24/262 (9%) Query: 8 ISNKLTKTRVLARSQELKSRIPATKRMNQRVLQEMLQKYQMVYVKPCCGSLGQGVIRVEK 67 I +K KT+ L + +P T +++ L ML Y V+ KP GS G +IR+ K Sbjct: 20 IKSKWKKTKWLNEDAYFRQYVPHTLPFSKKNLNAMLADYTTVFFKPTDGSGGNNIIRIRK 79 Query: 68 TAGSSLRSKNSGNHAPGDKGTYRYQAGMQIHNFSDYDAAYQAIHKETRGKPYLVQKGIRL 127 T G Y+ Q ++S Y+ +++ +PYL+QKGIRL Sbjct: 80 TGGG-----------------YQSQLNTTKTSYSSSSQLYRDLNRFAGSRPYLLQKGIRL 122 Query: 128 LLHKGRPFDIRVMVQRNLKGQWEATGVAGRVAHPLKVVTNGSQGGTIYPVEVLLTPYTSP 187 G+PFDIRVMVQ+ +G W T + +V +P KV TN +QGG+I + + + Sbjct: 123 AKSNGKPFDIRVMVQKTREGAWVGTALFTKVGNPNKVATNYNQGGSIGTFKKTM---SGA 179 Query: 188 EKRTALI----AAMHDIGVKSARQLSTAYPGLQEIGVDLALDRNLKPWILEVNTAPDPCP 243 +A I + + +GV + Y G +E+G+D+A+D +PWILEVNT P P Sbjct: 180 NFDSAFIQQLESELKGLGVAVGKNFDRHYKGFKELGLDVAVDSKGRPWILEVNTRPQIYP 239 Query: 244 FTKLKDRRMINRIVQYGKAYGR 265 LKDR + +R++ YGK YGR Sbjct: 240 LKNLKDRSLYHRVLSYGKHYGR 261 >B1DDG0.1 B1DDG0_9BACL Putative uncharacterized protein Length = 259 Score = 134 bits (337), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 92/266 (34%), Positives = 133/266 (50%), Gaps = 16/266 (6%) Query: 2 KEQIRRISNKLTKTRVLARSQELKSRIPATKRMNQRVLQEMLQKYQMVYVKPCCGSLGQG 61 K + R I KL R L + LK +P T N++ + ML ++ VYVKP GSLG G Sbjct: 5 KYKSRNIYGKLKVCRYLNSHKSLKKLVPHTVSFNRKHMASMLAEHSSVYVKPDTGSLGVG 64 Query: 62 VIRVEKTAGSSLRSKNSGNHAPGDKGTYRYQAGMQIHNFSDYDAAYQAIHKETRGKPYLV 121 + +V+K GS K H K R + A Y I+K + K ++ Sbjct: 65 IFKVKKAKGSGYTVK----HIVKKKQLSR--------RLASTSAVYDHINKRSE-KRLII 111 Query: 122 QKGIRLLLHKGRPFDIRVMVQRNLKGQWEATGVAGRVAHPLKVVTNGSQGGTIYPVEVLL 181 QKGI L GR +DIRVMVQR G W G +V P K+VTN QGG +Y +E L Sbjct: 112 QKGITLDRVNGRAYDIRVMVQRKPGGTWTVNGCMVKVGAPKKIVTNYYQGGKLYTMEKLG 171 Query: 182 TPY-TSPEKRTALIAAMHDIGVKSARQLSTAYPGLQEIGVDLALDRNLKPWILEVNTA-P 239 SP+K I+ + +K A+ LS G+ E+G+D A D+ + W++EVN+ P Sbjct: 172 KKQGLSPKKTAKRISQLKSKSLKIAKHLSGKRKGMHELGIDFAYDKKQRLWVIEVNSNHP 231 Query: 240 DPCPFTKLKDRRMINRIVQYGKAYGR 265 P +L D + ++ ++ +YGR Sbjct: 232 QFYPVKRL-DPKAYKKMKEFAGSYGR 256 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,578,572,350 Number of extensions: 63716316 Number of successful extensions: 145646 Number of sequences better than 1.0e-05: 208 Number of HSP's gapped: 145296 Number of HSP's successfully gapped: 211 Length of query: 279 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 145 Effective length of database: 1,798,280,193 Effective search space: 260750627985 Effective search space used: 260750627985 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)