BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0535.0014.p (739 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D6A5.1 B1D6A5_9BACL Cysteine synthase EC=2.5.1.47 354 2e-95 B4VZM9.1 B4VZM9_9CYAN Cysteine synthase EC=2.5.1.47 333 3e-89 B1D6A6.1 B1D6A6_9BACL Coenzyme F390 synthetase-like protein 330 3e-88 A7BPN5.1 A7BPN5_9GAMM Cysteine synthase EC=2.5.1.47 323 6e-86 C1F4N7.1 C1F4N7_ACIC5 Pyridoxal-phosphate dependent enzyme/ornit... 303 5e-80 >B1D6A5.1 B1D6A5_9BACL Cysteine synthase EC=2.5.1.47 Length = 332 Score = 354 bits (908), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 168/312 (53%), Positives = 220/312 (70%), Gaps = 2/312 (0%) Query: 426 ILAAIGNTPLIRLGNLFRNSRFEVYAKMELLNPGGSAKDRPALRMIQEAWKAGEIGPGTS 485 I + IGNTP+++LG LF ++ FEVYAK+E+ NPGGS KDRPA M++ A G I PG+ Sbjct: 7 IASMIGNTPMVKLGRLFEHADFEVYAKLEMHNPGGSVKDRPAKAMLEAALLDGRIKPGSV 66 Query: 486 IIESSSGNMAISLAMICKYLGMRFISVVDPRTTGTNLQILKALDAKIDVVAEPDPDTGEF 545 I+ESSSGN+A+ LA +C +G +FI VVDP+TT NL++L+A A++D+V +PDP+TGEF Sbjct: 67 IVESSSGNLAVGLAQLCNTMGFKFICVVDPKTTEANLRVLQAYGARVDLVEKPDPETGEF 126 Query: 546 LPARLKRVQQLLAELPGSCWLNQYGNPNNYLSHYHTTMKEIVTALDRIDYLFCSVSTCGT 605 +PARL RV++ L LP + W NQYGN NN LSH TTM E+ L ++DYLFC VSTCGT Sbjct: 127 VPARLARVRRWLKRLPDAFWPNQYGNKNNALSHQQTTMAEMAADLPKLDYLFCGVSTCGT 186 Query: 606 IRGLAEYARDHGLKTRIVAVDAEGSAIFGGNKSR--RRFPGLGAGIVPPFCRTELIDRVV 663 IRG +Y R++GL+T+++AVDAEGS IFGG K + R PGLGAGI P C E I VV Sbjct: 187 IRGCVDYIRENGLQTKVIAVDAEGSIIFGGEKGKVTRLLPGLGAGIKPGLCPDEGIHEVV 246 Query: 664 HVSDSEIVAGCRALAQNESVLXXXXXXXXXXXVKHMEQEIAPGSVCGVIVHDKGERYLDT 723 V+D + +AGCR L + ES+L V+ I PGS C V++ D+GERYL+T Sbjct: 247 RVNDRDCIAGCRKLVRMESILAGGSSGGVISAVEKYSPFIEPGSTCAVLLPDRGERYLNT 306 Query: 724 VYSDSWVQNQFG 735 VY D+WV FG Sbjct: 307 VYDDTWVLRIFG 318 >B4VZM9.1 B4VZM9_9CYAN Cysteine synthase EC=2.5.1.47 Length = 340 Score = 333 bits (855), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 162/332 (48%), Positives = 223/332 (67%), Gaps = 5/332 (1%) Query: 408 KLYYQQQKDRAGINLSG---GILAAIGNTPLIRLGNLFRNSRFEVYAKMELLNPGGSAKD 464 KL Q + A I+++ G+L IG TPL++L +F++++F+++ K+E+ NPGGS KD Sbjct: 2 KLTKQYPVEDAFIDITSINEGVLGTIGTTPLVKLNRVFKDAKFQLFGKLEMFNPGGSIKD 61 Query: 465 RPALRMIQEAWKAGEIGPGTSIIESSSGNMAISLAMICKYLGMRFISVVDPRTTGTNLQI 524 R A +I+ A GEI ++IIESSSGN+ I LA C +LG+RFI VVDP+TT N+ I Sbjct: 62 RSAFNIIKNAIFRGEIQANSTIIESSSGNLGIGLAQTCAFLGLRFICVVDPKTTKQNINI 121 Query: 525 LKALDAKIDVVAEPDPDTGEFLPARLKRVQQLLAELPGSCWLNQYGNPNNYLSHYHTTMK 584 LKA A++D+V +PDP TG+FLP R+ RV+ LL+ +P S W NQY N NN +H H TM Sbjct: 122 LKAYGAEVDLVTKPDPITGDFLPVRIDRVKLLLSSIPNSFWCNQYANVNNASAH-HQTMH 180 Query: 585 EIVTALD-RIDYLFCSVSTCGTIRGLAEYARDHGLKTRIVAVDAEGSAIFGGNKSRRRFP 643 EIVT+L+ ++DYLFCS S+CGT+RG AEY R + L T+I+AVDA+GS IFG +++R P Sbjct: 181 EIVTSLNGKLDYLFCSTSSCGTLRGCAEYIRSNNLSTKIIAVDAKGSVIFGDKRAKRLLP 240 Query: 644 GLGAGIVPPFCRTELIDRVVHVSDSEIVAGCRALAQNESVLXXXXXXXXXXXVKHMEQEI 703 G GA VP + L D +HVSD + V GCR L + E++L + +I Sbjct: 241 GHGAARVPELFQPGLEDAYIHVSDLDCVVGCRHLLRWEAILAGGSSGGVISAIAKKRADI 300 Query: 704 APGSVCGVIVHDKGERYLDTVYSDSWVQNQFG 735 G+ C I+ D+GERYLDTVYSDSWV+ FG Sbjct: 301 PEGATCAAILCDRGERYLDTVYSDSWVEEHFG 332 >B1D6A6.1 B1D6A6_9BACL Coenzyme F390 synthetase-like protein Length = 420 Score = 330 bits (847), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 180/414 (43%), Positives = 255/414 (61%), Gaps = 14/414 (3%) Query: 14 MLLDKLQDKVLEVSECFPWYKGLIGGETTDYKLQNLPLMTAEILETHY----YTVSADPS 69 M L L+ K EV + +PWYK + G + D+ +++PL+T + L +Y TV D Sbjct: 5 MNLPSLRAKWEEVRQLYPWYKEMTG-DNKDFNWEDVPLLTQDRLLPYYESDERTVPQD-- 61 Query: 70 LAVYRTSGTSSGRRKAIFYSEEDEKHYVDIKTKLFGELIAGSGCTRAMADMGTGHAAATA 129 VYRTSGTS +RKAI+Y DE+ Y+ K ++F EL+ +RA++DMGTGHA ATA Sbjct: 62 WNVYRTSGTSGNKRKAIYYDASDEEAYIQYKKEMFAELLKNYEVSRALSDMGTGHAEATA 121 Query: 130 LTIFERLGLEKSAIPFELPVEQHIERIQAFKPDLLYTMPSILDHIVYASDNPRALGIRKI 189 + IFE LGL ++PF LP H+ RI ++PD+LYTMPS+LD ++ + G++ + Sbjct: 122 VQIFEELGLACESVPFGLPAAAHLIRIAEYRPDVLYTMPSLLDGMLRVAPPDFNWGVQCV 181 Query: 190 ILVGEIATPEWQRNMARLFGLDPRDITDTYGSIEIGTIAYYSHDLGRYIFADGIYAEGIG 249 ILVGE A P W++ +A G+ +DI DT GSIEIGTIAYY + RY+ D I AEG+ Sbjct: 182 ILVGEPAPPAWRQRVAERLGITEQDIMDTLGSIEIGTIAYYDRSIERYVCMDDIIAEGVE 241 Query: 250 TQELGGELRPLGTDESILVLTSSVRKMLPAVRFVTYDVIRDFRPVMVGGVMKQSFGSIVK 309 G L E +LVLTS VR+ PA+RFVTYDV+R+ R G +F +IVK Sbjct: 242 PAAAGLPDVGLPAGEQLLVLTSLVRRRFPALRFVTYDVVRNLRVEEREGKQVTTFDAIVK 301 Query: 310 RVGRELKHGEKISLYDIEQVVYRHLEDAIVRVQVRNNALTVSVKSKSA-DHTILPVIRDE 368 RVG ELKHGEKIS+YDIE +++H+ A+V+V V N L +++ + + +RDE Sbjct: 302 RVGPELKHGEKISVYDIENAIFKHVRQAVVKVLVNGNKLQINITTTDGLNEEARTAVRDE 361 Query: 369 IRDCIPEIGMMIRGHLLKEIEVILAAGD----EPLESGQ--VKNKKLYYQQQKD 416 + IP IG MIRG LL++++V+ D P +G+ +K KKL+ QQ + Sbjct: 362 LHSTIPAIGAMIRGGLLEQMDVLFIGEDTDSASPEGTGKKPIKQKKLFVQQSSE 415 >A7BPN5.1 A7BPN5_9GAMM Cysteine synthase EC=2.5.1.47 Length = 324 Score = 323 bits (827), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 158/313 (50%), Positives = 209/313 (66%), Gaps = 1/313 (0%) Query: 425 GILAAIGNTPLIRLGNLFRNSRFEVYAKMELLNPGGSAKDRPALRMIQEAWKAGEIGPGT 484 GIL+ IG TPLI+L ++++ F V+AK+E NP GS KDRPA+ MI++A + G+IGP T Sbjct: 8 GILSLIGATPLIQLTQIYKDLPFRVFAKLEGFNPSGSIKDRPAISMIKQAMEKGKIGPNT 67 Query: 485 SIIESSSGNMAISLAMICKYLGMRFISVVDPRTTGTNLQILKALDAKIDVVAEPDPDTGE 544 +IESSSGN+ I LA +C+Y G+RFI VVDP+TT NL I+K A++++V EPDP+TGE Sbjct: 68 VVIESSSGNLGIGLAQVCRYFGLRFICVVDPKTTKQNLNIIKVYGAELEMVLEPDPETGE 127 Query: 545 FLPARLKRVQQLLAELPGSCWLNQYGNPNNYLSHYHTTMKEIVTALDRI-DYLFCSVSTC 603 +LPARLKRVQ L+A+ S W NQY N N +HY T EIV AL I +YLF +VSTC Sbjct: 128 YLPARLKRVQALMAKFSDSFWPNQYLNEYNPRAHYEGTFPEIVAALKEIPNYLFGAVSTC 187 Query: 604 GTIRGLAEYARDHGLKTRIVAVDAEGSAIFGGNKSRRRFPGLGAGIVPPFCRTELIDRVV 663 GTI G A Y + L+T+++AVDA GS IFGG K R PG+GA I F L++ V Sbjct: 188 GTIMGCANYIHNQRLETKVIAVDAVGSIIFGGEKKARLVPGMGASIKSQFLEENLLNEYV 247 Query: 664 HVSDSEIVAGCRALAQNESVLXXXXXXXXXXXVKHMEQEIAPGSVCGVIVHDKGERYLDT 723 HV+D + V GC+ L + E++L ++ I GS C +I D+GERYLDT Sbjct: 248 HVTDLDCVIGCQRLLRTEAILAGGSSGAVLMGFDKIKDSIPAGSNCVLIFADRGERYLDT 307 Query: 724 VYSDSWVQNQFGH 736 +YSD WV FG+ Sbjct: 308 IYSDGWVTQHFGN 320 >C1F4N7.1 C1F4N7_ACIC5 Pyridoxal-phosphate dependent enzyme/ornithine cyclodeaminase family protein Length = 691 Score = 303 bits (775), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 155/316 (49%), Positives = 201/316 (63%), Gaps = 2/316 (0%) Query: 422 LSGGILAAIGNTPLIRLGNLFRNSRFEVYAKMELLNPGGSAKDRPALRMIQEAWKAGEIG 481 L GIL+ IGNTPL+ L LF FE+YAK+E+LNP GS+KDR AL +++EAW AG I Sbjct: 8 LYSGILSTIGNTPLVPLKRLFSGISFELYAKLEMLNPSGSSKDRTALSLLREAWDAGRIT 67 Query: 482 PGTSIIESSSGNMAISLAMICKYLGMRFISVVDPRTTGTNLQILKALDAKIDVVAEPDPD 541 ++I+ESSSGN+ I +A C Y+G+RFI VVD RTT NL+IL+A +I +V D Sbjct: 68 AASTIVESSSGNLGIGIAQFCAYMGLRFICVVDSRTTPVNLKILEAYGVEISLVDVCDAP 127 Query: 542 TGEFLPARLKRVQQLLAELPGSCWLNQYGNPNNYLSHYHTTMKEIVTALD-RIDYLFCSV 600 G+ L AR+ RVQ+L E+P S W NQY N N +H HTTM+EI +L ++DYLF + Sbjct: 128 NGDLLRARIARVQRLCREIPDSFWPNQYANTANARAH-HTTMREIYESLHGQVDYLFVAT 186 Query: 601 STCGTIRGLAEYARDHGLKTRIVAVDAEGSAIFGGNKSRRRFPGLGAGIVPPFCRTELID 660 STCGT+RG AE+ R+ G T+I+AVDAEGS IFGG+ RR PG GA VP + L Sbjct: 187 STCGTLRGCAEFLRNAGASTKIIAVDAEGSVIFGGHPGRRLIPGHGASRVPELYQPGLES 246 Query: 661 RVVHVSDSEIVAGCRALAQNESVLXXXXXXXXXXXVKHMEQEIAPGSVCGVIVHDKGERY 720 V VSD + V GC L E++ ++ EI GS C +I+ D+GERY Sbjct: 247 AHVKVSDLDCVTGCYQLLHREAIFAGGSSGGIVSAAARLKDEIPAGSTCVMILCDRGERY 306 Query: 721 LDTVYSDSWVQNQFGH 736 LDT+YS WVQ G Sbjct: 307 LDTIYSRQWVQESLGQ 322 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.138 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 4,289,237,288 Number of extensions: 181319519 Number of successful extensions: 465777 Number of sequences better than 1.0e-05: 3741 Number of HSP's gapped: 456627 Number of HSP's successfully gapped: 3743 Length of query: 739 Length of database: 3,060,696,203 Length adjustment: 143 Effective length of query: 596 Effective length of database: 1,713,491,058 Effective search space: 1021240670568 Effective search space used: 1021240670568 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 135 (56.6 bits)