BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0535.0012.p
         (50 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q2QCZ9.1 Q2QCZ9_BACTU Zwa5B                                            62   2e-08
Q2LCL4.1 Q2LCL4_BACCE Zwa5B                                            62   2e-08
C3I361.1 C3I361_BACTU Putative uncharacterized protein                 62   2e-08
C3FVP4.1 C3FVP4_BACTB Putative uncharacterized protein                 62   2e-08
B5UXM3.1 B5UXM3_BACCE Zwa5B                                            62   2e-08

>Q2QCZ9.1 Q2QCZ9_BACTU Zwa5B
          Length = 322

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 34/43 (79%)

Query: 3   AVIVDDWDEVCRENTDIERLHLERGLTQGGTGKITDVVVRHCL 45
           +++VD+W+EVCRE TD+ER+HLERGL +  T  I DVV+R  L
Sbjct: 238 SLVVDNWEEVCREKTDVERMHLERGLQKEDTVSIADVVIRGAL 280


>Q2LCL4.1 Q2LCL4_BACCE Zwa5B
          Length = 322

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 34/43 (79%)

Query: 3   AVIVDDWDEVCRENTDIERLHLERGLTQGGTGKITDVVVRHCL 45
           +++VD+W+EVCRE TD+ER+HLERGL +  T  I DVV+R  L
Sbjct: 238 SLVVDNWEEVCREKTDVERMHLERGLQKEDTVSIADVVIRGAL 280


>C3I361.1 C3I361_BACTU Putative uncharacterized protein
          Length = 311

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 34/43 (79%)

Query: 3   AVIVDDWDEVCRENTDIERLHLERGLTQGGTGKITDVVVRHCL 45
           +++VD+W+EVCRE TD+ER+HLERGL +  T  I DVV+R  L
Sbjct: 227 SLVVDNWEEVCREKTDVERMHLERGLQKEDTVSIADVVIRGAL 269


>C3FVP4.1 C3FVP4_BACTB Putative uncharacterized protein
          Length = 322

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 34/43 (79%)

Query: 3   AVIVDDWDEVCRENTDIERLHLERGLTQGGTGKITDVVVRHCL 45
           +++VD+W+EVCRE TD+ER+HLERGL +  T  I DVV+R  L
Sbjct: 238 SLVVDNWEEVCREKTDVERMHLERGLQKEDTVSIADVVIRGAL 280


>B5UXM3.1 B5UXM3_BACCE Zwa5B
          Length = 322

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 34/43 (79%)

Query: 3   AVIVDDWDEVCRENTDIERLHLERGLTQGGTGKITDVVVRHCL 45
           +++VD+W+EVCRE TD+ER+HLERGL +  T  I DVV+R  L
Sbjct: 238 SLVVDNWEEVCREKTDVERMHLERGLQKEDTVSIADVVIRGAL 280


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.139    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 300,506,992
Number of extensions: 7821708
Number of successful extensions: 15965
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 15965
Number of HSP's successfully gapped: 11
Length of query: 50
Length of database: 3,060,696,203
Length adjustment: 23
Effective length of query: 27
Effective length of database: 2,844,012,858
Effective search space: 76788347166
Effective search space used: 76788347166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)