BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0535.0008.p (310 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DBZ9.1 B1DBZ9_9BACL Putative uncharacterized protein 242 4e-62 B3K8U8.1 B3K8U8_9BACI YheD 194 7e-48 B3K957.1 B3K957_9BACI Putative uncharacterized protein 152 3e-35 B1D6A7.1 B1D6A7_9BACL YheD 150 2e-34 B3KKM2.1 B3KKM2_9BACI YheD 116 3e-24 >B1DBZ9.1 B1DBZ9_9BACL Putative uncharacterized protein Length = 253 Score = 242 bits (617), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 119/246 (48%), Positives = 162/246 (65%), Gaps = 6/246 (2%) Query: 60 TANLVQSKWVKTKLLLRSNAVRPFIPDTRKFSRRNLEEMIRSYGMIYVKPERGTYGNGVI 119 + LV SKW KT +LL S A+R +IP TR F++ NL+ M+ YGM+YVKP GT+G GV+ Sbjct: 2 SIQLVYSKWEKTNVLLHSPALREYIPSTRLFNKENLQLMLAEYGMVYVKPVNGTFGKGVM 61 Query: 120 RAERSEN--KGYTYQYEETVRHFDTFEAFHKSLAQKTGKRSYLIQKGIHLLKHNRRRFDI 177 R ER + KGY YQ T+R F T E H+SLA++ R YL+Q+GI LL+H RRFDI Sbjct: 62 RVERLKQAAKGYKYQLNTTIRTFPTLELLHQSLAKRINGRRYLVQRGIDLLRHKNRRFDI 121 Query: 178 RVMVQLSPKGVWEATGIIGRLGHPRKIVTNYXXXXPPAPRPMAIETLLSTHLTRQQLAHL 237 RVMVQ + WEATGIIGRL HP K+VTNY PM+ E LLS+H + Q Sbjct: 122 RVMVQRNENNHWEATGIIGRLAHPAKVVTNYHN----GGTPMSFERLLSSHQSPTQKMIY 177 Query: 238 TGELNLLGTRMAAHMQKTYPRIRKIGVDVGLDRSLTPWVIEVNMNPDPYIFNQLKDKSMY 297 L + +A ++K YP I+++G+D+ +D+ PW++EVN PD +IF +L+DKSM+ Sbjct: 178 AMRLKQISLDIAKELEKHYPGIKELGIDIAIDQQQRPWILEVNTKPDAFIFRKLEDKSMF 237 Query: 298 RKVMKY 303 RK+ +Y Sbjct: 238 RKIYQY 243 >B3K8U8.1 B3K8U8_9BACI YheD Length = 270 Score = 194 bits (494), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 97/256 (37%), Positives = 155/256 (60%), Gaps = 17/256 (6%) Query: 60 TANLVQSKWVKTKLLLRSNAVRPFIPDTRKFSRRNLEEMIRSYGMIYVKPERGTYGNGVI 119 T V SKW KTK+LL++ + ++P TR +S LE+M+ ++ ++Y+KP+RGTYG GV+ Sbjct: 2 TIQRVASKWAKTKILLKNKGLASYVPATRLYSLETLEDMLNTHTLVYIKPDRGTYGIGVM 61 Query: 120 RAER----------SENKGYTYQYEETVRHFDTFEAFHKSLAQKTGKRSYLIQKGIHLLK 169 E+ + + Y +Y+ F + E+ HK+L+ + YL+Q+GIHLL+ Sbjct: 62 SVEQLHSQTADTDETTDASYMLRYDHKTEVFTSLESLHKTLSDLFQGKDYLVQQGIHLLR 121 Query: 170 HNRRRFDIRVMVQLSPKGVWEATGIIGRLGHPRKIVTNYXXXXPPAP-RPMAIETLLSTH 228 H R FD+RV+ Q SP G W +TGIIGR+ KI+TN+ +P+ +E H Sbjct: 122 HKDRPFDLRVLTQKSPSGQWVSTGIIGRVAAKNKIITNHHSGGVVHHYKPLMLE-----H 176 Query: 229 LTRQQLAHLTGELNLLGTRMAAHMQKTYPRIRKIGVDVGLDRSLTPWVIEVNMNPDPYIF 288 +T ++ ++ ELN LG +A+ +QKTYP +++IG+DV +D W++EVN P + F Sbjct: 177 MTAEEAGNIRRELNTLGVNVASQLQKTYPNLKEIGLDVAIDDRWNIWILEVNTKPALFPF 236 Query: 289 NQ-LKDKSMYRKVMKY 303 + KD S+Y++V KY Sbjct: 237 KKFFKDPSIYKQVEKY 252 >B3K957.1 B3K957_9BACI Putative uncharacterized protein Length = 263 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 82/247 (33%), Positives = 130/247 (52%), Gaps = 4/247 (1%) Query: 61 ANLVQSKWVKTKLLLRSNAVRPFIPDTRKFSRRNLEEMIRSYGMIYVKPERGTYGNGVIR 120 ++ ++SKW KTK L R ++P T FS++NL M+ Y ++ KP G+ GN +IR Sbjct: 17 SSTIKSKWKKTKWLNEDAYFRQYVPHTLPFSKKNLNAMLADYTTVFFKPTDGSGGNNIIR 76 Query: 121 AERSENKGYTYQYEETVRHFDTFEAFHKSLAQKTGKRSYLIQKGIHLLKHNRRRFDIRVM 180 R GY Q T + + ++ L + G R YL+QKGI L K N + FDIRVM Sbjct: 77 I-RKTGGGYQSQLNTTKTSYSSSSQLYRDLNRFAGSRPYLLQKGIRLAKSNGKPFDIRVM 135 Query: 181 VQLSPKGVWEATGIIGRLGHPRKIVTNYXXXXPPAPRPMAIETLLSTHLTRQQLAHLTGE 240 VQ + +G W T + ++G+P K+ TNY +T+ + + L E Sbjct: 136 VQKTREGAWVGTALFTKVGNPNKVATNYNQGGSIGTFK---KTMSGANFDSAFIQQLESE 192 Query: 241 LNLLGTRMAAHMQKTYPRIRKIGVDVGLDRSLTPWVIEVNMNPDPYIFNQLKDKSMYRKV 300 L LG + + + Y +++G+DV +D PW++EVN P Y LKD+S+Y +V Sbjct: 193 LKGLGVAVGKNFDRHYKGFKELGLDVAVDSKGRPWILEVNTRPQIYPLKNLKDRSLYHRV 252 Query: 301 MKYRRYW 307 + Y +++ Sbjct: 253 LSYGKHY 259 >B1D6A7.1 B1D6A7_9BACL YheD Length = 249 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 80/240 (33%), Positives = 132/240 (55%), Gaps = 5/240 (2%) Query: 66 SKWVKTKLLLRSNAVRPFIPDTRKFSRRNLEEMIRSYGMIYVKPERGTYGNGVIRAERSE 125 +KW KT +L + ++R +P T FS +L+ M+R Y M+YVKP RG++G GV+R E Sbjct: 9 NKWAKTIVLNQKASIRSHVPHTLLFSESSLKSMLRLYQMVYVKPNRGSHGVGVMRVE-YR 67 Query: 126 NKGYTYQYEETVRHFDTFEAFHKSLAQKTGKRSYLIQKGIHLLKHNRRRFDIRVMVQLSP 185 N Y+YQ R T+ SL K Y+IQ+GIHL + R +D+RV +QL+ Sbjct: 68 NGTYSYQLGAKRRRNLTWAQLVASLTYKIQGAKYIIQRGIHLSRFKNRIYDLRVELQLNE 127 Query: 186 KGVWEATGIIGRLGHPRKIVTNYXXXXPPAPRPMAIETLLSTHLTRQQLAHLTGELNLLG 245 G W+ TG++ R+ VTN +++++H + + +T +LN L Sbjct: 128 YGRWQITGMLARVAQQGMAVTN----GAQGAEIYTFSSVIASHGGAELVRRVTSQLNSLC 183 Query: 246 TRMAAHMQKTYPRIRKIGVDVGLDRSLTPWVIEVNMNPDPYIFNQLKDKSMYRKVMKYRR 305 A ++ YP + ++G D+ LD+ L PW++EVN P+ F +L ++MY +++ R+ Sbjct: 184 IESAHMLKAKYPFLNELGFDIALDQQLHPWILEVNTTPEAIPFKKLPTRTMYNRILHLRK 243 >B3KKM2.1 B3KKM2_9BACI YheD Length = 220 Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 110/227 (48%), Gaps = 18/227 (7%) Query: 64 VQSKWVKTKLLLRSNAVRPFIPDTRKFSRRNLEEMIRSYGMIYVKPERGTYGNGVIRAER 123 + SKW+KT+ LL V P+IP T+ + L M+ + M+ +KP GT GNGVIR ++ Sbjct: 6 LASKWLKTEALLTDPQVAPYIPATQSYGGDTLVSMLDEHEMVVIKPIVGTGGNGVIRIQK 65 Query: 124 SENKGYTYQYEETVRHFDTFEAFHKSLAQKTGKRSYLIQKGIHLLKHNRRRFDIRVMVQL 183 + GY ++ H DT + L + KR Y+IQ+GIHL K R D RV V + Sbjct: 66 -DGTGYLVTHKRRTVHVDTLNSLLHVLNRMKLKRRYMIQQGIHLAKIQGRPLDYRVKV-V 123 Query: 184 SPKGVWEATGIIGRLGHPRKIVTNYXXXXPPAPRPMAIETLLST-HLTRQQLAHLTG--- 239 +G WE ++GRL P VTN TLL H R L H+ Sbjct: 124 KERGRWEFRAMLGRLASPGLFVTNICKGG----------TLLRCRHALRLSLPHINAREK 173 Query: 240 --ELNLLGTRMAAHMQKTYPRIRKIGVDVGLDRSLTPWVIEVNMNPD 284 E+ L + ++ +P I ++G D GLD W++EVN P Sbjct: 174 RNEMRYLTRQCITILESRFPGIGELGFDYGLDVEGKIWILEVNTRPS 220 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,740,675,405 Number of extensions: 66828080 Number of successful extensions: 140124 Number of sequences better than 1.0e-05: 189 Number of HSP's gapped: 139881 Number of HSP's successfully gapped: 192 Length of query: 310 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 175 Effective length of database: 1,788,859,178 Effective search space: 313050356150 Effective search space used: 313050356150 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)