BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0534.0029.p (291 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z8V8.1 C0Z8V8_BREBN Putative uncharacterized protein 330 1e-88 Q2B0Q1.1 Q2B0Q1_9BACI Amidohydrolase 295 2e-78 A8VVU4.1 A8VVU4_9BACI AAA ATPase, central domain protein 268 5e-70 A6TVX3.1 A6TVX3_ALKMQ Amidohydrolase 2 251 4e-65 B7B1X0.1 B7B1X0_9FIRM Putative uncharacterized protein 193 2e-47 >C0Z8V8.1 C0Z8V8_BREBN Putative uncharacterized protein Length = 285 Score = 330 bits (845), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 151/270 (55%), Positives = 199/270 (73%), Gaps = 4/270 (1%) Query: 16 FHRTASDQSKVDYTAAGLKAEFDQNDVILGIGMGVTEQTKGAFPDSGSPNPMGLDLEEEV 75 F RTA+++S VDY+ AGL E+ +N V+LGIGMG+TE FPD + PMGLDL +E+ Sbjct: 16 FKRTAAEKSFVDYSVAGLLQEYAENGVVLGIGMGLTETQPDGFPDVEALTPMGLDLTDEL 75 Query: 76 PPFLMECVGINPNRLAGAQAQAELDRIEARMQAPEVAGIKLYAGYYHYYVHDKIYAPVYE 135 PP + C+GINP +L +A + R+EA +Q P V G+K+Y GYY +Y +D +Y PVY Sbjct: 76 PPQFVYCLGINPFKLD----EAAVARLEADLQKPNVVGLKIYLGYYPFYAYDSVYDPVYA 131 Query: 136 LAAKYSLPVVIHTGDTYSMNGLLKYSHPLTVDELAYQQRGVNFMICHLGDPWVMDAAEVV 195 LAAKY +PVV HTGDTYS GLLKYSHPLT+DE+A + R VNFM+ H GDPWV+D AEVV Sbjct: 132 LAAKYQVPVVFHTGDTYSERGLLKYSHPLTLDEVAVKHRDVNFMMAHFGDPWVLDGAEVV 191 Query: 196 AKNPNVYADLSGLVVGDRPHFERFMNEPLFMDHFRRALVYCDHYEKMLFGTDWPLAPIGL 255 KN N++ADLSGL+VGD + +R PLF H R A+ YCDHY+K LFGTDWPLAP+ Sbjct: 192 YKNRNMFADLSGLMVGDAANCKRLAESPLFFSHLRHAITYCDHYDKFLFGTDWPLAPVKS 251 Query: 256 YAEFIRRLVPGQHHEKVFYRNAFELFPRIR 285 Y +F++ L+P ++HE VFY+ A ++FP+I+ Sbjct: 252 YIQFVQDLIPAEYHEDVFYKTALKVFPKIK 281 >Q2B0Q1.1 Q2B0Q1_9BACI Amidohydrolase Length = 286 Score = 295 bits (756), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 143/275 (52%), Positives = 183/275 (66%), Gaps = 5/275 (1%) Query: 16 FHRTASDQSKVDYTAAGLKAEFDQNDVILGIGMGVTEQTKGAFPDSGSPNPMGLDLEEEV 75 FH TA D S VDY+ G+ AE+ V+LGIGMG+ E FPD + PM LDL E Sbjct: 16 FHETARDLSFVDYSYKGISAEYRDAGVLLGIGMGLEETNGMGFPDHDARTPMMLDLAESQ 75 Query: 76 PPFLMECVGINPNRLAGAQAQAELDRIEARMQAPEVAGIKLYAGYYHYYVHDKIYAPVYE 135 P ++ C GINP + L R+E +Q P G K+Y GYY +Y +D++Y PVY+ Sbjct: 76 PDIIVACAGINPFNMDSEA----LVRLEDVIQRPGTVGFKIYLGYYPFYAYDEVYEPVYK 131 Query: 136 LAAKYSLPVVIHTGDTYSMNGLLKYSHPLTVDELAYQQRGVNFMICHLGDPWVMDAAEVV 195 LA KYS+PVV HTGDTYS GLLKYSHPL +DE+A + R VNFM+ H GDPW + AE++ Sbjct: 132 LAEKYSVPVVFHTGDTYSERGLLKYSHPLAIDEVAVRHRNVNFMMAHFGDPWTLTGAEII 191 Query: 196 AKNPNVYADLSGLVVGDRPHFERFMNEPLFMDHFRRALVYCDHYEKMLFGTDWPLAPIGL 255 KNPNVYADLSGL+VG ++ + F+DH R A+ + D Y+K++FGTDWPL PI Sbjct: 192 YKNPNVYADLSGLIVGTEEELKK-RSGGRFLDHLRHAIEFADSYDKLIFGTDWPLIPIAP 250 Query: 256 YAEFIRRLVPGQHHEKVFYRNAFELFPRIRQRIAE 290 Y EFI+ L+P +HHEKVFY NA +LFPRI + E Sbjct: 251 YIEFIKDLIPEEHHEKVFYYNALKLFPRIAAFLPE 285 >A8VVU4.1 A8VVU4_9BACI AAA ATPase, central domain protein Length = 289 Score = 268 bits (684), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 134/273 (49%), Positives = 177/273 (64%), Gaps = 7/273 (2%) Query: 16 FHRTASDQSKVDYTAAGLKAEFDQNDVILGIGMGVTEQTKG-AFPDSGSPNPMGLDLEEE 74 F +TA S V Y+ +GL E D++ V L I MGV E G FPD +PMGLDL Sbjct: 16 FAKTARQASHVQYSYSGLMDEMDRSGVDLAIAMGVREMEGGEGFPDRSPNSPMGLDLIPS 75 Query: 75 VPP--FLMECVGINPNRLAGAQAQAELDRIEARMQAPEVAGIKLYAGYYHYYVHDKIYAP 132 V + EC GINP R+ + E+ +E + P+ GIK+Y GYY YY D +YAP Sbjct: 76 VQKGQRVAECPGINPFRVG----RKEIPALERALLEPQTVGIKIYLGYYPYYAFDDVYAP 131 Query: 133 VYELAAKYSLPVVIHTGDTYSMNGLLKYSHPLTVDELAYQQRGVNFMICHLGDPWVMDAA 192 VY+LAA + LPVV HTGDT+S GLLKY+HPLT+DE+A + F++ H GDPW++DAA Sbjct: 132 VYDLAASFDLPVVFHTGDTFSTRGLLKYAHPLTIDEVAVKYPKNRFVMAHFGDPWMLDAA 191 Query: 193 EVVAKNPNVYADLSGLVVGDRPHFERFMNEPLFMDHFRRALVYCDHYEKMLFGTDWPLAP 252 EV+ KNPNVYADLSGL+VGDR +R P F DHF+ AL +CD +K++FGTDWPL P Sbjct: 192 EVLYKNPNVYADLSGLMVGDRYELKRIRETPHFFDHFKHALAFCDRPDKLMFGTDWPLTP 251 Query: 253 IGLYAEFIRRLVPGQHHEKVFYRNAFELFPRIR 285 I Y +FI +PG +++F A ++F ++R Sbjct: 252 IAPYIDFIDHYIPGTAKDEIFGGTALQVFSKLR 284 >A6TVX3.1 A6TVX3_ALKMQ Amidohydrolase 2 Length = 285 Score = 251 bits (642), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 119/266 (44%), Positives = 170/266 (63%), Gaps = 1/266 (0%) Query: 16 FHRTASDQSKVDYTAAGLKAEFDQNDVILGIGMGVTEQTKGAFPDSGSPNPMGLDLEEEV 75 F A S+++Y+ GLK +F+ N+++ GI MG+ E AFPD+ NPM +LE + Sbjct: 16 FRNCAEKISQINYSMEGLKEDFESNEIVTGIAMGLEETHDKAFPDAEQRNPMEANLEGTL 75 Query: 76 PPFLMECVGINPNRLAGAQAQAELDRIEARMQAPEVAGIKLYAGYYHYYVHDKIYAPVYE 135 P +L C+GINP +L E IE ++Q V GIKLY GYY V + IY P+Y Sbjct: 76 PSWLKYCLGINPLQLKN-DPLGEFLTIERKLQEQAVVGIKLYPGYYPVAVTNAIYRPIYH 134 Query: 136 LAAKYSLPVVIHTGDTYSMNGLLKYSHPLTVDELAYQQRGVNFMICHLGDPWVMDAAEVV 195 LA Y +PV IH G TY++ G L SHPL V+++A Q V F+I HLGDPWVMD A ++ Sbjct: 135 LAEAYGVPVTIHCGKTYAVKGYLHDSHPLLVNQVALQYPNVKFIIAHLGDPWVMDTAAII 194 Query: 196 AKNPNVYADLSGLVVGDRPHFERFMNEPLFMDHFRRALVYCDHYEKMLFGTDWPLAPIGL 255 + N NV+ADLSGLV+GD+ + M LF++H +RAL Y Y+K+L+G+DWPL + + Sbjct: 195 SNNSNVFADLSGLVIGDQQSVRQRMESKLFVEHIQRALDYAASYDKILYGSDWPLVQLNI 254 Query: 256 YAEFIRRLVPGQHHEKVFYRNAFELF 281 Y +I+ L+ Q+H+ VFY NA +++ Sbjct: 255 YINWIKGLIAQQYHKDVFYENAIKVY 280 >B7B1X0.1 B7B1X0_9FIRM Putative uncharacterized protein Length = 277 Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 93/213 (43%), Positives = 133/213 (62%), Gaps = 1/213 (0%) Query: 70 DLEEEVPPFLMECVGINPNRLAGAQAQAELDRIEARMQAPEVAGIKLYAGYYHYYVHDKI 129 +LE PPFL C+G++ A+ +L IE +++ GIKLY GY +Y++D Sbjct: 54 ELEPAYPPFLSYCIGLDSQVFDMAKLPQKLHLIEQHLRSERCVGIKLYPGYASFYLYDDR 113 Query: 130 YAPVYELAAKYSLPVVIHTGDTYSMNGLLKYSHPLTVDELAYQQRGVNFMICHLGDPWVM 189 P+YELAA+Y PV +HTG T + LLKYSHPL +DE A + R V F++CH G+PW Sbjct: 114 LTPIYELAARYKKPVAVHTGLTATDKALLKYSHPLVMDEAATKFREVQFVMCHFGEPWFT 173 Query: 190 DAAEVVAKNPNVYADLSGLVVGDRPHFERFMNEP-LFMDHFRRALVYCDHYEKMLFGTDW 248 DAA V+ KNPNV ADLSGL+ P F F + +++ + L Y D Y++ +FGTDW Sbjct: 174 DAAAVIEKNPNVAADLSGLLERKIPDFAAFCEKKHFYIERLKGWLEYLDLYDRFMFGTDW 233 Query: 249 PLAPIGLYAEFIRRLVPGQHHEKVFYRNAFELF 281 PLA +G Y F + ++P +H ++VFY NA ++ Sbjct: 234 PLANLGDYIAFTKEIIPEEHWQEVFYENAVRIY 266 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.140 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,771,131,803 Number of extensions: 79371217 Number of successful extensions: 173009 Number of sequences better than 1.0e-05: 121 Number of HSP's gapped: 172951 Number of HSP's successfully gapped: 121 Length of query: 291 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 157 Effective length of database: 1,798,280,193 Effective search space: 282329990301 Effective search space used: 282329990301 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)