BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0534.0028.p
         (168 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C0Z8V9.1 C0Z8V9_BREBN Putative uncharacterized protein                 62   1e-08
A6CI30.1 A6CI30_9BACI Putative uncharacterized protein                 55   2e-06

>C0Z8V9.1 C0Z8V9_BREBN Putative uncharacterized protein
          Length = 1031

 Score = 62.4 bits (150), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 5/157 (3%)

Query: 3    RGIVIHQHYLMLPGVPVLCVQHSVTNGSGEALPHYSFADDNFFKPSPEVFSEGWVEVPGQ 62
            RG+  HQ+YL+LPGVPVLC    +   +G        A D F +   E  +  W++  G 
Sbjct: 875  RGLTCHQYYLLLPGVPVLCHTVEIEQNTGTYFAGKELATDIFLQTGTED-AAVWLKTVGT 933

Query: 63   G----RFLLGKLEAQLQSKGLLRIGAASRQDMLQVVSSYPNQSSAVYVNNKGICQGVDYQ 118
                  + L + E  +       +G A+ +D + +V+        VY N +     V  +
Sbjct: 934  NGEELNYTLAQGELDVLEVSDYVLGRANSKDQMHIVTDLDTADLQVYANKEVAVASVVRE 993

Query: 119  LSLLNGETLWTQPTFLVLGPIALNPDDVRGLLNLSFA 155
            L+L N  T +T P F +     L  + +  L  + FA
Sbjct: 994  LNLPNNSTTFTPPVFFLFADNTLPSNALSDLRAIRFA 1030


>A6CI30.1 A6CI30_9BACI Putative uncharacterized protein
          Length = 1026

 Score = 54.7 bits (130), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 8/148 (5%)

Query: 3    RGIVIHQHYLMLPGVPVLCVQHSVTNGSGEALPHYSFADDNFFKPSPEVFSEGWVEVPGQ 62
            +G  + Q+ L LP VPVL     +   SG          + FFKP  E+ S  + +VP +
Sbjct: 873  KGTTLKQYALTLPEVPVLACYGEILQNSGRTFKGELLDLEAFFKPGDELTS-CFAKVPSE 931

Query: 63   G---RFLLGKLEAQLQSKGLLRIGAASRQDMLQVVSSYPNQSSAVYVNNKGICQGVDYQL 119
            G   ++  G  E  L     + +G+   +  +  + S   + S +Y+N +        + 
Sbjct: 932  GVVEKYFAGIEEFMLGDTEYVTVGSEDWESKITFIHSASRRLSELYMNQEVFVTASTEEW 991

Query: 120  SLLNGETLWTQPTFLVLG----PIALNP 143
            S  +GET  T+PT L++G      A+NP
Sbjct: 992  SASSGETYTTKPTILLIGEEEYSEAINP 1019


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,086,847,021
Number of extensions: 44902782
Number of successful extensions: 84180
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 84179
Number of HSP's successfully gapped: 2
Length of query: 168
Length of database: 3,060,696,203
Length adjustment: 125
Effective length of query: 43
Effective length of database: 1,883,069,328
Effective search space: 80971981104
Effective search space used: 80971981104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)