BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0534.0026.p
         (120 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q65N30.1 Q65N30_BACLD Putative uncharacterized protein                196   6e-49
B3KD87.1 B3KD87_9BACI Helix-turn-helix HxlR type                      193   4e-48
Q9Z9W1.1 Y655_BACHD Uncharacterized HTH-type transcriptional reg...   189   7e-47
Q5WI43.1 Q5WI43_BACSK Transcriptional regulator                       188   1e-46
A8FC39.1 A8FC39_BACP2 Possible transcriptional regulator              165   1e-39

>Q65N30.1 Q65N30_BACLD Putative uncharacterized protein
          Length = 111

 Score =  196 bits (498), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 99/114 (86%), Positives = 102/114 (89%), Gaps = 3/114 (2%)

Query: 3   MSMAEYKGKVKNVQDTPFGYTLSVIGGKWKMVIIYLLAENQXXXXXXXXXXKRQIGAITY 62
           MSMAEYKGKVKN+QDTPFGYTLSVIGGKWKMVIIYLLAENQ          KRQIGAITY
Sbjct: 1   MSMAEYKGKVKNIQDTPFGYTLSVIGGKWKMVIIYLLAENQPIRFNEL---KRQIGAITY 57

Query: 63  KTLSSQLKELEADGMVIRKEYPQVPPKVEYSLTDKAETLLPVLEGLCEWGTKNQ 116
           KTLSSQLKELEADG+V RKEYPQVPPKVEYSLTDKAE+LLPVLEGLCEWG KNQ
Sbjct: 58  KTLSSQLKELEADGLVKRKEYPQVPPKVEYSLTDKAESLLPVLEGLCEWGLKNQ 111


>B3KD87.1 B3KD87_9BACI Helix-turn-helix HxlR type
          Length = 113

 Score =  193 bits (491), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 97/114 (85%), Positives = 101/114 (88%), Gaps = 3/114 (2%)

Query: 3   MSMAEYKGKVKNVQDTPFGYTLSVIGGKWKMVIIYLLAENQXXXXXXXXXXKRQIGAITY 62
           MSMAE+KGKVKN+QDTPFGYT+SVIGGKWKMVIIYLLAENQ          KRQIGAITY
Sbjct: 1   MSMAEFKGKVKNIQDTPFGYTVSVIGGKWKMVIIYLLAENQTVRFNDL---KRQIGAITY 57

Query: 63  KTLSSQLKELEADGMVIRKEYPQVPPKVEYSLTDKAETLLPVLEGLCEWGTKNQ 116
           KTLSSQLKELEADG+V RKEYPQVPPKVEYSLTDKA TLLPVLEGLCEWG KNQ
Sbjct: 58  KTLSSQLKELEADGLVKRKEYPQVPPKVEYSLTDKAVTLLPVLEGLCEWGVKNQ 111


>Q9Z9W1.1 Y655_BACHD Uncharacterized HTH-type transcriptional regulator
           BH0655
          Length = 113

 Score =  189 bits (480), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 95/115 (82%), Positives = 100/115 (86%), Gaps = 3/115 (2%)

Query: 3   MSMAEYKGKVKNVQDTPFGYTLSVIGGKWKMVIIYLLAENQXXXXXXXXXXKRQIGAITY 62
           MSMAEYKGKVKN+QDTPFGYTLS+IGGKWKMVIIYLLAE+Q          KRQIG ITY
Sbjct: 1   MSMAEYKGKVKNIQDTPFGYTLSLIGGKWKMVIIYLLAEDQPIRFKEL---KRQIGTITY 57

Query: 63  KTLSSQLKELEADGMVIRKEYPQVPPKVEYSLTDKAETLLPVLEGLCEWGTKNQN 117
           KTLSSQLKELEADG+V RKEYPQVPPKVEYSLTDKA TLLP+LE LCEWG KNQN
Sbjct: 58  KTLSSQLKELEADGLVKRKEYPQVPPKVEYSLTDKAGTLLPILEELCEWGVKNQN 112


>Q5WI43.1 Q5WI43_BACSK Transcriptional regulator
          Length = 113

 Score =  188 bits (478), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 94/114 (82%), Positives = 99/114 (86%), Gaps = 3/114 (2%)

Query: 3   MSMAEYKGKVKNVQDTPFGYTLSVIGGKWKMVIIYLLAENQXXXXXXXXXXKRQIGAITY 62
           MSMAEYKGKVK++QDTPFGYTLSVIGGKWKMVIIYLLAEN+          KRQIG ITY
Sbjct: 1   MSMAEYKGKVKHIQDTPFGYTLSVIGGKWKMVIIYLLAENETVRFNEL---KRQIGTITY 57

Query: 63  KTLSSQLKELEADGMVIRKEYPQVPPKVEYSLTDKAETLLPVLEGLCEWGTKNQ 116
           KTLSSQLKELEADGMV RKEYPQ+PPKVEYSLT+KAETLLPVLE LCEWG  NQ
Sbjct: 58  KTLSSQLKELEADGMVKRKEYPQIPPKVEYSLTEKAETLLPVLEELCEWGVANQ 111


>A8FC39.1 A8FC39_BACP2 Possible transcriptional regulator
          Length = 112

 Score =  165 bits (418), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 81/115 (70%), Positives = 98/115 (85%), Gaps = 4/115 (3%)

Query: 3   MSMAEYKGKVKNVQDTPFGYTLSVIGGKWKMVIIYLLAENQXXXXXXXXXXKRQIGAITY 62
           MSMA+Y+ K  N+Q+TPFGYTLSVIGGKWKM+I+YLL+ENQ          KR++G IT+
Sbjct: 1   MSMADYRKK-GNIQETPFGYTLSVIGGKWKMLILYLLSENQPVRFNDM---KRRLGTITF 56

Query: 63  KTLSSQLKELEADGMVIRKEYPQVPPKVEYSLTDKAETLLPVLEGLCEWGTKNQN 117
           KTLS+QLK+LEADGM+IRKEYPQVPPKVEYSLT KAETLLP+LE LC+WG KN++
Sbjct: 57  KTLSAQLKDLEADGMIIRKEYPQVPPKVEYSLTYKAETLLPILEQLCDWGEKNRS 111


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.314    0.132    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 635,173,364
Number of extensions: 20822569
Number of successful extensions: 36194
Number of sequences better than 1.0e-05: 1997
Number of HSP's gapped: 35051
Number of HSP's successfully gapped: 1998
Length of query: 120
Length of database: 3,060,696,203
Length adjustment: 86
Effective length of query: 34
Effective length of database: 2,250,488,913
Effective search space: 76516623042
Effective search space used: 76516623042
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)