BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0534.0025.p (304 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q5WI44.1 Q5WI44_BACSK Arginase EC=3.5.3.1 550 e-155 Q9KF33.1 Q9KF33_BACHD BH0654 protein 540 e-152 Q9Z9W0.1 Q9Z9W0_BACHD Arginase 539 e-151 Q65N31.1 Q65N31_BACLD Putative uncharacterized protein 529 e-148 B3KD88.1 B3KD88_9BACI Arginase/agmatinase/formiminoglutamase 525 e-147 >Q5WI44.1 Q5WI44_BACSK Arginase EC=3.5.3.1 Length = 304 Score = 550 bits (1417), Expect = e-155, Method: Compositional matrix adjust. Identities = 261/303 (86%), Positives = 285/303 (94%) Query: 1 MTKKTIRLLMPQWQGGNNPNYSFGAELLAWLAPDNDQPLIHVPVQAYDGTPLHNENGMYG 60 MT+KT+RLLMPQWQGGNNPNYSFGAELLAWLAPDNDQPLIHVPVQAY+GTPL NENGM G Sbjct: 1 MTQKTVRLLMPQWQGGNNPNYSFGAELLAWLAPDNDQPLIHVPVQAYNGTPLENENGMNG 60 Query: 61 RTQLLEQLEAARHLIDAHKPDRIVMFGGDCLVEQAPFAYLNERYGGELGLIWIDAHSDLV 120 RTQLL QLEAA+H+I AHKPDRIVMFGGDCLVEQAPFAYLNERYGGELGLIWIDAHSDLV Sbjct: 61 RTQLLAQLEAAQHIIKAHKPDRIVMFGGDCLVEQAPFAYLNERYGGELGLIWIDAHSDLV 120 Query: 121 RYAGYDNGHTLPLGNLLGEGDEEFARHVKTPLKPEHVFIAGLATPTEKEIEVISEAFQRL 180 RY GYDN H+LPLGNLLGEGDEEFA+HVK PLKPE+VFIAGLA PTE+E+E+ +EAFQRL Sbjct: 121 RYVGYDNAHSLPLGNLLGEGDEEFAKHVKIPLKPENVFIAGLAAPTEQEMELFAEAFQRL 180 Query: 181 GIAPEEQDTEMIQRLGIKTAGTQELTNSTESIKEWIKESGIKHLAIHLDLDVLDPKSFRS 240 GIAP E DTE+IQRLGI+TAGT+EL NST SIK+WIKES IKHLAIHLDLDVLDPK+FRS Sbjct: 181 GIAPTEPDTEVIQRLGIRTAGTEELANSTASIKKWIKESDIKHLAIHLDLDVLDPKAFRS 240 Query: 241 LLFANPEAPYNYSPAGTMQMPLLLNLIKELSEATDVVGLGITEHMPWDSINLKNLLREIP 300 LLFANPEAP+N +P GTMQ+P L+NLIKELSE TDVVGLGITEHMPWD+INLKNLLR+IP Sbjct: 241 LLFANPEAPFNLTPEGTMQIPQLINLIKELSEETDVVGLGITEHMPWDAINLKNLLRDIP 300 Query: 301 ILN 303 +LN Sbjct: 301 LLN 303 >Q9KF33.1 Q9KF33_BACHD BH0654 protein Length = 304 Score = 540 bits (1390), Expect = e-152, Method: Compositional matrix adjust. Identities = 261/303 (86%), Positives = 284/303 (93%) Query: 1 MTKKTIRLLMPQWQGGNNPNYSFGAELLAWLAPDNDQPLIHVPVQAYDGTPLHNENGMYG 60 MTKKTIRLLMPQWQGGNNP+YSFGAELLAWLAPDNDQPLIHVPVQAYDGTPL NENG+ G Sbjct: 1 MTKKTIRLLMPQWQGGNNPHYSFGAELLAWLAPDNDQPLIHVPVQAYDGTPLENENGVNG 60 Query: 61 RTQLLEQLEAARHLIDAHKPDRIVMFGGDCLVEQAPFAYLNERYGGELGLIWIDAHSDLV 120 R QLLEQLEAA+H+I AHKPDRIVMFGGDCLVEQAPFAYLNERY GELGLIWIDAHSDLV Sbjct: 61 RKQLLEQLEAAQHIIHAHKPDRIVMFGGDCLVEQAPFAYLNERYDGELGLIWIDAHSDLV 120 Query: 121 RYAGYDNGHTLPLGNLLGEGDEEFARHVKTPLKPEHVFIAGLATPTEKEIEVISEAFQRL 180 RYAGYDNGHTLPLGNLLGEGDEEFA+HVK PLKPE+VFIAGLATPTE+E VIS+ QRL Sbjct: 121 RYAGYDNGHTLPLGNLLGEGDEEFAKHVKIPLKPENVFIAGLATPTEEETNVISKELQRL 180 Query: 181 GIAPEEQDTEMIQRLGIKTAGTQELTNSTESIKEWIKESGIKHLAIHLDLDVLDPKSFRS 240 G+AP E DTE+IQRLGI+TAGT+EL STESIK+WIKES IK+LAIHLDLDVLDPK+FRS Sbjct: 181 GVAPTEPDTEVIQRLGIRTAGTKELMTSTESIKKWIKESNIKYLAIHLDLDVLDPKAFRS 240 Query: 241 LLFANPEAPYNYSPAGTMQMPLLLNLIKELSEATDVVGLGITEHMPWDSINLKNLLREIP 300 LLFANPEAPY++SPAGTMQ+ LL+L+KELSE TDVVGLGITEHMPWD+I+LK+LL EIP Sbjct: 241 LLFANPEAPYHFSPAGTMQLRQLLHLMKELSEVTDVVGLGITEHMPWDAIHLKHLLEEIP 300 Query: 301 ILN 303 ILN Sbjct: 301 ILN 303 >Q9Z9W0.1 Q9Z9W0_BACHD Arginase Length = 304 Score = 539 bits (1388), Expect = e-151, Method: Compositional matrix adjust. Identities = 261/303 (86%), Positives = 284/303 (93%) Query: 1 MTKKTIRLLMPQWQGGNNPNYSFGAELLAWLAPDNDQPLIHVPVQAYDGTPLHNENGMYG 60 MTKKTIRLLMPQWQGGNNP+YSFGAELLAWLAPDNDQPLIHVPVQAYDGTPL NENG+ G Sbjct: 1 MTKKTIRLLMPQWQGGNNPHYSFGAELLAWLAPDNDQPLIHVPVQAYDGTPLENENGVNG 60 Query: 61 RTQLLEQLEAARHLIDAHKPDRIVMFGGDCLVEQAPFAYLNERYGGELGLIWIDAHSDLV 120 R QLLEQLEAA+H+I AHKPDRIVMFGGDCLVEQAPFAYLNERY GELGLIWIDAHSDLV Sbjct: 61 RKQLLEQLEAAQHIIHAHKPDRIVMFGGDCLVEQAPFAYLNERYDGELGLIWIDAHSDLV 120 Query: 121 RYAGYDNGHTLPLGNLLGEGDEEFARHVKTPLKPEHVFIAGLATPTEKEIEVISEAFQRL 180 RYAGYDNGHTLPLGNLLGEGDEEFA+HVK PLKPE+VFIAGLATPTE+E VIS+ QRL Sbjct: 121 RYAGYDNGHTLPLGNLLGEGDEEFAKHVKIPLKPENVFIAGLATPTEEETNVISKELQRL 180 Query: 181 GIAPEEQDTEMIQRLGIKTAGTQELTNSTESIKEWIKESGIKHLAIHLDLDVLDPKSFRS 240 G+AP E DTE+IQRLGI+TAGT+EL STESIK+WIKES IK+LAIHLDLDVLDPK+FRS Sbjct: 181 GVAPTEPDTEVIQRLGIRTAGTKELMTSTESIKKWIKESIIKYLAIHLDLDVLDPKAFRS 240 Query: 241 LLFANPEAPYNYSPAGTMQMPLLLNLIKELSEATDVVGLGITEHMPWDSINLKNLLREIP 300 LLFANPEAPY++SPAGTMQ+ LL+L+KELSE TDVVGLGITEHMPWD+I+LK+LL EIP Sbjct: 241 LLFANPEAPYHFSPAGTMQLRQLLHLMKELSEVTDVVGLGITEHMPWDAIHLKHLLEEIP 300 Query: 301 ILN 303 ILN Sbjct: 301 ILN 303 >Q65N31.1 Q65N31_BACLD Putative uncharacterized protein Length = 304 Score = 529 bits (1362), Expect = e-148, Method: Compositional matrix adjust. Identities = 256/303 (84%), Positives = 276/303 (91%) Query: 1 MTKKTIRLLMPQWQGGNNPNYSFGAELLAWLAPDNDQPLIHVPVQAYDGTPLHNENGMYG 60 M KKTIRLLMPQWQGGNNPNYSFGAELLAWLAP+NDQPLIHVPVQ YDGTPL NENG+ G Sbjct: 1 MAKKTIRLLMPQWQGGNNPNYSFGAELLAWLAPENDQPLIHVPVQPYDGTPLENENGING 60 Query: 61 RTQLLEQLEAARHLIDAHKPDRIVMFGGDCLVEQAPFAYLNERYGGELGLIWIDAHSDLV 120 R QLLEQLEAA+H+I AHKPDRIVMFGGDCLVEQAPFAYLNERYGG+LGLIWIDAHSDLV Sbjct: 61 RKQLLEQLEAAQHIIHAHKPDRIVMFGGDCLVEQAPFAYLNERYGGDLGLIWIDAHSDLV 120 Query: 121 RYAGYDNGHTLPLGNLLGEGDEEFARHVKTPLKPEHVFIAGLATPTEKEIEVISEAFQRL 180 RYAGYDNGHTLPLGNLLGEGDEEFA+HVK PLKPE+VFIAGLA PTE+E +VIS QR Sbjct: 121 RYAGYDNGHTLPLGNLLGEGDEEFAKHVKIPLKPENVFIAGLAAPTEEETKVISNELQRQ 180 Query: 181 GIAPEEQDTEMIQRLGIKTAGTQELTNSTESIKEWIKESGIKHLAIHLDLDVLDPKSFRS 240 GIAP E DTE+IQRLGI+TAGT++L STE IKEWIKES IK+LAIHLDLDVLDPK+FRS Sbjct: 181 GIAPTEPDTEVIQRLGIRTAGTKKLMTSTEPIKEWIKESNIKYLAIHLDLDVLDPKAFRS 240 Query: 241 LLFANPEAPYNYSPAGTMQMPLLLNLIKELSEATDVVGLGITEHMPWDSINLKNLLREIP 300 LLFANPEAP N+SP GTMQMP LL+L+KELS TDVVGLGITEH+PWDSI+LK LL EIP Sbjct: 241 LLFANPEAPVNFSPEGTMQMPYLLHLLKELSSETDVVGLGITEHLPWDSIHLKKLLSEIP 300 Query: 301 ILN 303 IL Sbjct: 301 ILT 303 >B3KD88.1 B3KD88_9BACI Arginase/agmatinase/formiminoglutamase Length = 306 Score = 525 bits (1351), Expect = e-147, Method: Compositional matrix adjust. Identities = 258/305 (84%), Positives = 275/305 (90%), Gaps = 2/305 (0%) Query: 1 MTKKT--IRLLMPQWQGGNNPNYSFGAELLAWLAPDNDQPLIHVPVQAYDGTPLHNENGM 58 MTKKT IRLLMPQWQGGNNPNYSFGAELLAWLAPDNDQPLIHVPVQ YDGTPL NENGM Sbjct: 1 MTKKTKTIRLLMPQWQGGNNPNYSFGAELLAWLAPDNDQPLIHVPVQTYDGTPLVNENGM 60 Query: 59 YGRTQLLEQLEAARHLIDAHKPDRIVMFGGDCLVEQAPFAYLNERYGGELGLIWIDAHSD 118 GRTQLLEQL+AA HLI AHKPDRIVMFGGDCLVEQAPFAYLNERY GELGLIWIDAHSD Sbjct: 61 NGRTQLLEQLKAAHHLIHAHKPDRIVMFGGDCLVEQAPFAYLNERYDGELGLIWIDAHSD 120 Query: 119 LVRYAGYDNGHTLPLGNLLGEGDEEFARHVKTPLKPEHVFIAGLATPTEKEIEVISEAFQ 178 LVRY GYDNGHT+PLGNLLGEGDEEFA+HV PLKPE+VFIAGLATPTE+E +VISE FQ Sbjct: 121 LVRYVGYDNGHTVPLGNLLGEGDEEFAKHVNIPLKPENVFIAGLATPTEQEAKVISEGFQ 180 Query: 179 RLGIAPEEQDTEMIQRLGIKTAGTQELTNSTESIKEWIKESGIKHLAIHLDLDVLDPKSF 238 +LGI E DT+MIQRLGI+TAGT+EL NST IK WIKE GIKHLAIHLDLDVLDPK+F Sbjct: 181 KLGIGFAELDTDMIQRLGIRTAGTEELKNSTAPIKAWIKERGIKHLAIHLDLDVLDPKAF 240 Query: 239 RSLLFANPEAPYNYSPAGTMQMPLLLNLIKELSEATDVVGLGITEHMPWDSINLKNLLRE 298 RSLLFANPE P+N SP GTMQ+P LL+L+KELSE TDVVGLGITEH+PWDSI LK LL E Sbjct: 241 RSLLFANPEEPFNLSPQGTMQLPQLLHLLKELSEETDVVGLGITEHLPWDSIYLKKLLGE 300 Query: 299 IPILN 303 +PILN Sbjct: 301 MPILN 305 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.137 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,071,488,822 Number of extensions: 94935819 Number of successful extensions: 229731 Number of sequences better than 1.0e-05: 85 Number of HSP's gapped: 229625 Number of HSP's successfully gapped: 86 Length of query: 304 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 169 Effective length of database: 1,788,859,178 Effective search space: 302317201082 Effective search space used: 302317201082 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)