BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0534.0022.p (282 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B6XIU3.1 B6XIU3_9ENTR Putative uncharacterized protein 302 2e-80 B2Q0N2.1 B2Q0N2_PROST Putative uncharacterized protein 301 4e-80 B6X4X4.1 B6X4X4_9ENTR Putative uncharacterized protein 299 2e-79 C2W9F1.1 C2W9F1_BACCE NLPA lipoprotein 244 7e-63 C3AMT2.1 C3AMT2_BACMY NLPA lipoprotein 243 1e-62 >B6XIU3.1 B6XIU3_9ENTR Putative uncharacterized protein Length = 285 Score = 302 bits (773), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 146/281 (51%), Positives = 202/281 (71%), Gaps = 8/281 (2%) Query: 2 KKAMSLFLIGF-VLVLTACGANNAADNSKAGAAEGEKKEIVVGFGVGTYEEQFRQAILPI 60 +K ++L L+ ++VL CG N D++ +KK+I +GFGVG Y +Q + I+PI Sbjct: 9 QKIINLSLVATAIIVLAGCGDNKEKDSA-------DKKQITIGFGVGNYIDQVDKGIVPI 61 Query: 61 LEKQGYKVDIKTFSQNMQVNPAMKEGTIDASIFQSTAYMEAINGEIGADMVGIAYVPGAP 120 LEK+GY+V ++ FSQN Q+NPA +EG IDAS+ QS AYMEA N + +MV +A P AP Sbjct: 62 LEKKGYQVTLRQFSQNRQINPAFEEGAIDASVNQSRAYMEAYNQKNNINMVALADSPSAP 121 Query: 121 QGIYSVKHTTLDDVKDGTTVAVPNDPVNQERALRILEELGWVKIKEGSNLADFNINNMEP 180 Q + S KH +LD+V+DG VA+ NDPVN ER RILE+LGW+KIK + +F++N++EP Sbjct: 122 QSLRSNKHKSLDEVQDGMIVALSNDPVNAERGARILEQLGWIKIKPNVSTLNFSVNDIEP 181 Query: 181 DKYKIDIKILDPAQIMVSLQDVDYGVINGNYIASAGKKITDALKIENTPMQHRIIVSVNR 240 KYK+DI+ D AQ + L DVD+ V+NGNY+ASAG++I D L +EN+P++HR+IV+V + Sbjct: 182 AKYKLDIRETDAAQGLRLLDDVDFVVVNGNYVASAGQRIADGLVVENSPLEHRVIVTVLQ 241 Query: 241 KDENTQWAKDLKAAYESKEFEEYITGLEKYDGFILPEAWKN 281 KD +TQWAKDLK A+ESKE+ +YI YDGFI P AW N Sbjct: 242 KDLDTQWAKDLKEAFESKEYADYIRSQRLYDGFIEPAAWAN 282 >B2Q0N2.1 B2Q0N2_PROST Putative uncharacterized protein Length = 295 Score = 301 bits (771), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 147/279 (52%), Positives = 197/279 (70%), Gaps = 8/279 (2%) Query: 3 KAMSLFLIGFVLVLTACGANNAADNSKAGAAEGEKKEIVVGFGVGTYEEQFRQAILPILE 62 K +SL V+ L AC N+ DN KKEI +GFGVG Y +Q + I+PILE Sbjct: 21 KYLSLIATA-VIALAACNDNSEKDNPN-------KKEITIGFGVGNYIDQVEKGIVPILE 72 Query: 63 KQGYKVDIKTFSQNMQVNPAMKEGTIDASIFQSTAYMEAINGEIGADMVGIAYVPGAPQG 122 K+GYKV+++ FSQN Q+NPA +EG+IDAS+ QS AYMEA N + +MV + P APQ Sbjct: 73 KKGYKVNLRQFSQNRQINPAFEEGSIDASVNQSRAYMEAYNKKNNINMVALTDSPSAPQS 132 Query: 123 IYSVKHTTLDDVKDGTTVAVPNDPVNQERALRILEELGWVKIKEGSNLADFNINNMEPDK 182 + S KH +LD+VKDG VA+ NDPVN ER RILEELGW+KIK + F++N++EP K Sbjct: 133 LRSNKHKSLDEVKDGMIVALSNDPVNAERGARILEELGWIKIKPNISTLTFSVNDIEPAK 192 Query: 183 YKIDIKILDPAQIMVSLQDVDYGVINGNYIASAGKKITDALKIENTPMQHRIIVSVNRKD 242 Y++DI+ D AQ + L DVD+ V+NGNY+ASAG++I D L +EN+P++HR+IV+V + + Sbjct: 193 YRLDIRETDAAQGLRLLDDVDFVVVNGNYVASAGQRIADGLVVENSPLEHRVIVTVMQDN 252 Query: 243 ENTQWAKDLKAAYESKEFEEYITGLEKYDGFILPEAWKN 281 N+QWAKDLK A+ESKE+ +YI YDGFI P+AW N Sbjct: 253 VNSQWAKDLKEAFESKEYADYIRSQSIYDGFIEPQAWAN 291 >B6X4X4.1 B6X4X4_9ENTR Putative uncharacterized protein Length = 296 Score = 299 bits (765), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 145/279 (51%), Positives = 199/279 (71%), Gaps = 8/279 (2%) Query: 2 KKAMSLFLIGF-VLVLTACGANNAADNSKAGAAEGEKKEIVVGFGVGTYEEQFRQAILPI 60 +K +++ LI V+ L CG NN N +KK+I +GFGVG Y +Q + I+PI Sbjct: 23 QKLINISLIATAVIFLAGCGDNNEQTNP-------DKKQITIGFGVGNYIDQVEKGIVPI 75 Query: 61 LEKQGYKVDIKTFSQNMQVNPAMKEGTIDASIFQSTAYMEAINGEIGADMVGIAYVPGAP 120 LEK+GY+V+++ FSQN Q+NPA +EG IDAS+ QS AYMEA N + +MV +A P AP Sbjct: 76 LEKKGYQVNLRQFSQNRQINPAFEEGAIDASVNQSRAYMEAYNEKNNINMVALADSPSAP 135 Query: 121 QGIYSVKHTTLDDVKDGTTVAVPNDPVNQERALRILEELGWVKIKEGSNLADFNINNMEP 180 Q + S KH +L +VKDG VA+ NDPVN ER RILE+LGW+KIK + F++N++EP Sbjct: 136 QSLRSNKHKSLSEVKDGMIVALSNDPVNAERGARILEDLGWIKIKPNVSTLSFSVNDIEP 195 Query: 181 DKYKIDIKILDPAQIMVSLQDVDYGVINGNYIASAGKKITDALKIENTPMQHRIIVSVNR 240 KYK+DI+ D AQ + L+DVD+ V+NGNY+ASAG++I D L +EN+P++HR++VSV + Sbjct: 196 AKYKLDIRETDAAQGLRLLEDVDFVVVNGNYVASAGQRIADGLVVENSPLEHRVVVSVLQ 255 Query: 241 KDENTQWAKDLKAAYESKEFEEYITGLEKYDGFILPEAW 279 KD ++QWAKDLK A+ESKE+ +YI YDGFI P AW Sbjct: 256 KDLDSQWAKDLKEAFESKEYADYIRSQRIYDGFIEPAAW 294 >C2W9F1.1 C2W9F1_BACCE NLPA lipoprotein Length = 272 Score = 244 bits (623), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 126/275 (45%), Positives = 178/275 (64%), Gaps = 16/275 (5%) Query: 6 SLFLIGFVLVLTACGANNAADNSKAGAAEGEKKEIVVGFGVGTYEEQFRQAILPILEKQG 65 SLFLI T C +A G++KEI +GF G Y +Q ++A+ P LEK+G Sbjct: 14 SLFLI------TGCTQTSA----------GDQKEIRLGFTPGPYSDQVKKAVQPYLEKKG 57 Query: 66 YKVDIKTFSQNMQVNPAMKEGTIDASIFQSTAYMEAINGEIGADMVGIAYVPGAPQGIYS 125 YKV I F+ + NPA+ IDA+IFQSTA+M++ E A + I VP APQG+YS Sbjct: 58 YKVKIVEFNSPNETNPALTNKDIDANIFQSTAFMKSYAKENNAKISSIIQVPSAPQGVYS 117 Query: 126 VKHTTLDDVKDGTTVAVPNDPVNQERALRILEELGWVKIKEGSNLADFNINNMEPDKYKI 185 KH +LDD+KDG + VPNDPVN ERALRILE +GWVK+K+ N+ + ++ K Sbjct: 118 EKHKSLDDLKDGMKIGVPNDPVNLERALRILEGIGWVKLKDNVNILTISEKDITFKKKDF 177 Query: 186 DIKILDPAQIMVSLQDVDYGVINGNYIASAGKKITDALKIENTPMQHRIIVSVNRKDENT 245 + L+ QI +++D+DYG+INGN + S+G K+ +AL++E TP QHRIIV+V +D+ Sbjct: 178 TLVPLESPQIPRAMKDLDYGIINGNLVISSGHKLKEALELEKTPSQHRIIVTVRDEDKEK 237 Query: 246 QWAKDLKAAYESKEFEEYITGLEKYDGFILPEAWK 280 Q+AKDL AY S EF++ I E+++GF+LP+ K Sbjct: 238 QFAKDLIEAYHSPEFKKMIQSEEQFEGFVLPDYLK 272 >C3AMT2.1 C3AMT2_BACMY NLPA lipoprotein Length = 272 Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 120/272 (44%), Positives = 177/272 (65%), Gaps = 10/272 (3%) Query: 9 LIGFVLVLTACGANNAADNSKAGAAEGEKKEIVVGFGVGTYEEQFRQAILPILEKQGYKV 68 ++ + ++T C + G++KEI +GF G Y +Q ++A+ P LEK+GYK+ Sbjct: 11 IVCSLFIITGCTQTSG----------GDQKEIRLGFTPGPYSDQVKKAVQPYLEKKGYKI 60 Query: 69 DIKTFSQNMQVNPAMKEGTIDASIFQSTAYMEAINGEIGADMVGIAYVPGAPQGIYSVKH 128 I F+ + NPA+ IDA+IFQSTA+M++ E A + I VP APQG+YS KH Sbjct: 61 KIVEFNSPNETNPALTNKDIDANIFQSTAFMKSYAKENNAKISSIIQVPSAPQGVYSEKH 120 Query: 129 TTLDDVKDGTTVAVPNDPVNQERALRILEELGWVKIKEGSNLADFNINNMEPDKYKIDIK 188 +LDD+KDG + VPNDPVN ERALRILE +GWVK+KE N+ + ++ K + Sbjct: 121 KSLDDLKDGMKIGVPNDPVNLERALRILEGIGWVKLKENVNILTISEKDITFKKKDFKLV 180 Query: 189 ILDPAQIMVSLQDVDYGVINGNYIASAGKKITDALKIENTPMQHRIIVSVNRKDENTQWA 248 L+ QI +++D+DYG+INGN + S+G K+ +AL++E TP QHRIIV+V +D+ Q+A Sbjct: 181 PLESPQIPRAMKDLDYGIINGNLVISSGHKLKEALELEKTPSQHRIIVTVRDEDKEKQFA 240 Query: 249 KDLKAAYESKEFEEYITGLEKYDGFILPEAWK 280 KDL AY S EF++ I E+++GF+LP+ K Sbjct: 241 KDLMEAYHSPEFKKMIQSEEQFEGFVLPDYLK 272 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.133 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,719,116,906 Number of extensions: 72084483 Number of successful extensions: 164221 Number of sequences better than 1.0e-05: 1935 Number of HSP's gapped: 162230 Number of HSP's successfully gapped: 1936 Length of query: 282 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 148 Effective length of database: 1,798,280,193 Effective search space: 266145468564 Effective search space used: 266145468564 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 130 (54.7 bits)