BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0534.0020.p (214 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C4SM72.1 C4SM72_YERFR ABC-type metal ion transport system, perme... 220 6e-56 A1JT93.1 A1JT93_YERE8 Putative ABC transport permease component 218 3e-55 C4U322.1 C4U322_YERKR ABC-type metal ion transport system, perme... 201 4e-50 Q8NY20.1 Q8NY20_STAAW MW0417 protein 194 3e-48 Q6GJL1.1 Q6GJL1_STAAR Putative transport system membrane protein 194 3e-48 >C4SM72.1 C4SM72_YERFR ABC-type metal ion transport system, permease component Length = 219 Score = 220 bits (560), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 118/213 (55%), Positives = 139/213 (65%) Query: 1 VTSEQFIQAIIDTVYMVGMSLFXXXXXXXXXXXXXXXTRPGGVLENKLLYTLLNPVINII 60 +T EQFIQA+ DT+ MV +SL TRPGG++ N++ Y +LNPVINII Sbjct: 6 ITLEQFIQALHDTLVMVSISLVIGSLIGIPLGILLVVTRPGGLINNRVFYNILNPVINII 65 Query: 61 RSLPFIILLVAIIPFTRMIVHTSIGTNAAIVPLILYIAPYIGRLVENSLLEVNPGIMEAA 120 RSLPFIIL+VAIIP TR+IV+T+IGT AIVPLI++IAPYIGRLVENSLL+VNPGI+EAA Sbjct: 66 RSLPFIILMVAIIPLTRLIVNTTIGTPGAIVPLIIFIAPYIGRLVENSLLDVNPGILEAA 125 Query: 121 ESMGATPFQVIRFFLLPEAVGSLILSXXXXXXXXXXXXXXXXXXXXXXXXDLAIVYGYQR 180 +SMGATP Q I +FLLPEA+ SLIL+ DLAI YGYQR Sbjct: 126 KSMGATPLQAIGYFLLPEALSSLILALTTATIGLIGATAMAGTVGGGGIGDLAITYGYQR 185 Query: 181 FDXXXXXXXXXXXXXXXQGIQSLGNSLARKIRR 213 FD Q IQSLGN ARK RR Sbjct: 186 FDTFVTVTTAIVLIITVQLIQSLGNLFARKTRR 218 >A1JT93.1 A1JT93_YERE8 Putative ABC transport permease component Length = 221 Score = 218 bits (554), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 115/213 (53%), Positives = 139/213 (65%) Query: 1 VTSEQFIQAIIDTVYMVGMSLFXXXXXXXXXXXXXXXTRPGGVLENKLLYTLLNPVINII 60 +T +QF+QA+ DT+ MV +SL TRPGG+++N+ Y +LNP+INII Sbjct: 7 ITLDQFVQALHDTLVMVSISLVIGSLIGIPLGILLVVTRPGGLIKNRTFYNVLNPIINII 66 Query: 61 RSLPFIILLVAIIPFTRMIVHTSIGTNAAIVPLILYIAPYIGRLVENSLLEVNPGIMEAA 120 RSLPFIIL+VAIIP TR+IV+T+IGT AIVPLI++IAPYIGRLVENSLL+VNPGI+EAA Sbjct: 67 RSLPFIILMVAIIPLTRLIVNTTIGTPGAIVPLIIFIAPYIGRLVENSLLDVNPGILEAA 126 Query: 121 ESMGATPFQVIRFFLLPEAVGSLILSXXXXXXXXXXXXXXXXXXXXXXXXDLAIVYGYQR 180 +SMGATP Q I +FLLPEA+ SLIL+ DLAI YGYQR Sbjct: 127 KSMGATPLQAIWYFLLPEALSSLILALTTATIGLIGATAMAGTVGGGGIGDLAITYGYQR 186 Query: 181 FDXXXXXXXXXXXXXXXQGIQSLGNSLARKIRR 213 FD Q IQSLGN A KIRR Sbjct: 187 FDTFVTVTTAIVLIITVQLIQSLGNLFASKIRR 219 >C4U322.1 C4U322_YERKR ABC-type metal ion transport system, permease component Length = 219 Score = 201 bits (510), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 116/213 (54%), Positives = 140/213 (65%) Query: 1 VTSEQFIQAIIDTVYMVGMSLFXXXXXXXXXXXXXXXTRPGGVLENKLLYTLLNPVINII 60 +T +QFIQA+ DT+ MV +SL TRPGG+++N++ Y +LNP+INII Sbjct: 6 ITLDQFIQALHDTLVMVSISLVIGSLIGIPLGVLLVVTRPGGLIKNRVFYNILNPIINII 65 Query: 61 RSLPFIILLVAIIPFTRMIVHTSIGTNAAIVPLILYIAPYIGRLVENSLLEVNPGIMEAA 120 RSLPFIIL+VAIIP TR+IV+T+IGT AIVPLI++IAPYIGRLVENSLL+VNPGI+EAA Sbjct: 66 RSLPFIILMVAIIPLTRLIVNTTIGTPGAIVPLIIFIAPYIGRLVENSLLDVNPGILEAA 125 Query: 121 ESMGATPFQVIRFFLLPEAVGSLILSXXXXXXXXXXXXXXXXXXXXXXXXDLAIVYGYQR 180 +SMGATP Q I +FLLPEA+ SLIL+ DLAI YGYQR Sbjct: 126 KSMGATPLQAIWYFLLPEALSSLILALTTATIGLIGATAMAGTVGGGGIGDLAITYGYQR 185 Query: 181 FDXXXXXXXXXXXXXXXQGIQSLGNSLARKIRR 213 FD Q IQSLGN A KIRR Sbjct: 186 FDTFVTVTTAIVLIITVQLIQSLGNLFASKIRR 218 >Q8NY20.1 Q8NY20_STAAW MW0417 protein Length = 219 Score = 194 bits (494), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 105/212 (49%), Positives = 139/212 (65%) Query: 3 SEQFIQAIIDTVYMVGMSLFXXXXXXXXXXXXXXXTRPGGVLENKLLYTLLNPVINIIRS 62 S Q +QA+ +T+YMV ++LF TR G+ N +++ +LNP+INI+RS Sbjct: 8 SAQLLQALYETLYMVSIALFLGAVIGIPLGVLLVITRKQGIWPNIVIHQVLNPIINILRS 67 Query: 63 LPFIILLVAIIPFTRMIVHTSIGTNAAIVPLILYIAPYIGRLVENSLLEVNPGIMEAAES 122 LPFIILL+AI+PFT+++V TSIGT AAIVPL +Y+APYI RLVENSLLEV+ GI+EAA++ Sbjct: 68 LPFIILLIAIVPFTKLVVGTSIGTTAAIVPLTVYVAPYIARLVENSLLEVDEGIIEAAKA 127 Query: 123 MGATPFQVIRFFLLPEAVGSLILSXXXXXXXXXXXXXXXXXXXXXXXXDLAIVYGYQRFD 182 MGA+P Q+IR+FL+PEA+GSL+L+ DLA+VYGYQRFD Sbjct: 128 MGASPLQIIRYFLIPEALGSLVLAITTAIIGLIGSTAMAGAVGGGGIGDLALVYGYQRFD 187 Query: 183 XXXXXXXXXXXXXXXQGIQSLGNSLARKIRRY 214 Q IQ+LGN LAR IRR+ Sbjct: 188 TTVIIITVIVLVIIVQVIQTLGNVLARFIRRH 219 >Q6GJL1.1 Q6GJL1_STAAR Putative transport system membrane protein Length = 219 Score = 194 bits (494), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 105/212 (49%), Positives = 139/212 (65%) Query: 3 SEQFIQAIIDTVYMVGMSLFXXXXXXXXXXXXXXXTRPGGVLENKLLYTLLNPVINIIRS 62 S Q +QA+ +T+YMV ++LF TR G+ N +++ +LNP+INI+RS Sbjct: 8 SAQLLQALYETLYMVSIALFLGAVIGIPLGVLLVITRKQGIWPNIVIHQVLNPIINILRS 67 Query: 63 LPFIILLVAIIPFTRMIVHTSIGTNAAIVPLILYIAPYIGRLVENSLLEVNPGIMEAAES 122 LPFIILL+AI+PFT+++V TSIGT AAIVPL +Y+APYI RLVENSLLEV+ GI+EAA++ Sbjct: 68 LPFIILLIAIVPFTKLVVGTSIGTTAAIVPLTVYVAPYIARLVENSLLEVDEGIIEAAKA 127 Query: 123 MGATPFQVIRFFLLPEAVGSLILSXXXXXXXXXXXXXXXXXXXXXXXXDLAIVYGYQRFD 182 MGA+P Q+IR+FL+PEA+GSL+L+ DLA+VYGYQRFD Sbjct: 128 MGASPLQIIRYFLIPEALGSLVLAITTAIIGLIGSTAMAGAVGGGGIGDLALVYGYQRFD 187 Query: 183 XXXXXXXXXXXXXXXQGIQSLGNSLARKIRRY 214 Q IQ+LGN LAR IRR+ Sbjct: 188 TTVIIITVIVLVVIVQVIQTLGNVLARFIRRH 219 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.145 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 819,758,113 Number of extensions: 25099412 Number of successful extensions: 106260 Number of sequences better than 1.0e-05: 1374 Number of HSP's gapped: 106675 Number of HSP's successfully gapped: 1374 Length of query: 214 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 84 Effective length of database: 1,835,964,253 Effective search space: 154220997252 Effective search space used: 154220997252 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 128 (53.9 bits)