BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0534.0019.p (349 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C4US85.1 C4US85_YERRO Methionine import ATP-binding protein metN 2 446 e-123 A1JT91.1 A1JT91_YERE8 Putative ABC transport family protein 443 e-122 C4T1U9.1 C4T1U9_YERIN Methionine import ATP-binding protein metN 2 442 e-122 C4RXH1.1 C4RXH1_YERBE Methionine import ATP-binding protein metN 2 441 e-122 C4SE98.1 C4SE98_YERMO Methionine import ATP-binding protein metN 2 438 e-121 >C4US85.1 C4US85_YERRO Methionine import ATP-binding protein metN 2 Length = 338 Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 215/337 (63%), Positives = 267/337 (79%) Query: 3 MIELRDVYKTYLRKGISNDAIKGVQLKVEKGDIFGVIGYSGAGKSTLIRLVNYLERPTKG 62 MIEL+ +YKT+ RKG A+ V L VE GDIFG+IGYSGAGKSTL+R+VN LE PT G Sbjct: 1 MIELQHIYKTFERKGTKLQALNDVSLTVEDGDIFGIIGYSGAGKSTLLRMVNSLENPTSG 60 Query: 63 QVFVDGHDLGAYSDKELRAAKKNIGMIFQHFNLLESKKVFDNVAIPLVLLKKNKNEIHQR 122 V +DG DL +S ++LR KKNIGMIFQ+FNLLESK VF NVA+PL+LL KNK I +R Sbjct: 61 SVVIDGKDLHNFSHEQLRLLKKNIGMIFQNFNLLESKTVFKNVAMPLILLGKNKKFIQER 120 Query: 123 VMELLEFVGLSDKAGSYPSELSGGQKQRVGIARALASNPSVLLCDEATSALDPQTTRSIL 182 V ELL+FVGL DK+ S+P+ELSGGQKQRVGIARALA+NPS+LLCDEATS+LDPQTT IL Sbjct: 121 VAELLDFVGLGDKSHSFPNELSGGQKQRVGIARALATNPSILLCDEATSSLDPQTTAQIL 180 Query: 183 QLLKKINAEYHITIMIITHEMSVIQEICNKVAVMEGGRIIEQGSVLEVFGHPQHPTTQNF 242 LLKKIN +Y+IT+++ITHEMSVIQ+ICNKVAVME G+IIEQGSVL VFGHP HPTT NF Sbjct: 181 LLLKKINQQYNITVLLITHEMSVIQKICNKVAVMENGQIIEQGSVLAVFGHPTHPTTINF 240 Query: 243 VSTVIQTSMTSSMRKTLITDEGSRMYKLEFFGERASEPVLYELIRSSDVKVNILFANMTE 302 V TVI+ S+ S++K L R +KL F G A++PV+ +LI+ + VNILFANM+E Sbjct: 241 VRTVIKDSLPDSVKKLLDNSHAGRQFKLAFMGAIATQPVINQLIKQYAIGVNILFANMSE 300 Query: 303 IQDTTLGTMIIQLKGSSEEMDKALDFLKRREIDLEEV 339 IQDTTLG M++ L G + +D+A+ +L + ID++E+ Sbjct: 301 IQDTTLGHMVLLLSGENSTIDRAVTYLTQTGIDIQEI 337 >A1JT91.1 A1JT91_YERE8 Putative ABC transport family protein Length = 338 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 215/338 (63%), Positives = 267/338 (78%) Query: 3 MIELRDVYKTYLRKGISNDAIKGVQLKVEKGDIFGVIGYSGAGKSTLIRLVNYLERPTKG 62 MIEL+ + KT+ RKGI A+ V L VE GDIFG+IGYSGAGKSTL+R+VN LE PT G Sbjct: 1 MIELQHISKTFERKGIKLQALNDVNLTVEDGDIFGIIGYSGAGKSTLLRMVNSLESPTAG 60 Query: 63 QVFVDGHDLGAYSDKELRAAKKNIGMIFQHFNLLESKKVFDNVAIPLVLLKKNKNEIHQR 122 V +DG +L +S ++LR KKNIGMIFQ+FNLLESK VF NVA+PL+LL KNK I R Sbjct: 61 NVIIDGKNLHDFSQEQLRLLKKNIGMIFQNFNLLESKTVFKNVAMPLILLGKNKKFIQVR 120 Query: 123 VMELLEFVGLSDKAGSYPSELSGGQKQRVGIARALASNPSVLLCDEATSALDPQTTRSIL 182 V ELL+FVGL DK+ S+P+ELSGGQKQRVGIARALA+NPS+LLCDEATS+LDPQTT IL Sbjct: 121 VAELLDFVGLGDKSHSFPNELSGGQKQRVGIARALATNPSILLCDEATSSLDPQTTAQIL 180 Query: 183 QLLKKINAEYHITIMIITHEMSVIQEICNKVAVMEGGRIIEQGSVLEVFGHPQHPTTQNF 242 LLKKIN +Y+IT+++ITHEMSVIQ+ICNKVAVME G+IIEQGSVL VFGHP HPTT NF Sbjct: 181 LLLKKINQQYNITVLLITHEMSVIQKICNKVAVMENGQIIEQGSVLTVFGHPTHPTTINF 240 Query: 243 VSTVIQTSMTSSMRKTLITDEGSRMYKLEFFGERASEPVLYELIRSSDVKVNILFANMTE 302 V TVI+ S+ S++K L R ++L F G A++PV+ +LIR D+ VNILFANM+E Sbjct: 241 VRTVIKDSLPESVKKLLNNSHTGRQFRLAFVGAIATQPVINQLIRKYDIGVNILFANMSE 300 Query: 303 IQDTTLGTMIIQLKGSSEEMDKALDFLKRREIDLEEVD 340 IQDTTLG M++ L G + +D A+++L ID++E++ Sbjct: 301 IQDTTLGHMVLLLTGENHTIDSAVNYLAGTGIDIQEIN 338 >C4T1U9.1 C4T1U9_YERIN Methionine import ATP-binding protein metN 2 Length = 338 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 214/337 (63%), Positives = 266/337 (78%) Query: 3 MIELRDVYKTYLRKGISNDAIKGVQLKVEKGDIFGVIGYSGAGKSTLIRLVNYLERPTKG 62 MIEL+ + KT+ RKG+ A+ V L VE GDIFG+IGYSGAGKSTL+R+VN LE PT G Sbjct: 1 MIELQHISKTFERKGVKLQALNNVSLTVEDGDIFGIIGYSGAGKSTLLRMVNSLESPTSG 60 Query: 63 QVFVDGHDLGAYSDKELRAAKKNIGMIFQHFNLLESKKVFDNVAIPLVLLKKNKNEIHQR 122 V +DG++L +S ++LR KKNIGMIFQ+FNLLESK VF NVA+PL+LL +NK I R Sbjct: 61 DVIIDGNNLHDFSHEQLRLLKKNIGMIFQNFNLLESKTVFKNVAMPLILLGRNKKFIQDR 120 Query: 123 VMELLEFVGLSDKAGSYPSELSGGQKQRVGIARALASNPSVLLCDEATSALDPQTTRSIL 182 V ELL+FVGL DK+ S+P+ELSGGQKQRVGIARALA+NPS+LLCDEATS+LDPQTT IL Sbjct: 121 VAELLDFVGLGDKSNSFPNELSGGQKQRVGIARALATNPSILLCDEATSSLDPQTTAQIL 180 Query: 183 QLLKKINAEYHITIMIITHEMSVIQEICNKVAVMEGGRIIEQGSVLEVFGHPQHPTTQNF 242 LLKKIN +Y+IT+++ITHEMSVIQ+ICNKVAVME G+IIEQGSVL VFGHP HPTT NF Sbjct: 181 LLLKKINQQYNITVLLITHEMSVIQKICNKVAVMENGQIIEQGSVLTVFGHPTHPTTLNF 240 Query: 243 VSTVIQTSMTSSMRKTLITDEGSRMYKLEFFGERASEPVLYELIRSSDVKVNILFANMTE 302 V TVI+ S+ S+RK L R ++L F G A++PV+ +LIR D+ VNILFANM+E Sbjct: 241 VRTVIKDSLPDSVRKLLDNSHAGRQFRLAFMGAIATQPVINQLIRQYDIGVNILFANMSE 300 Query: 303 IQDTTLGTMIIQLKGSSEEMDKALDFLKRREIDLEEV 339 IQDTTLG M++ L G++ +D A+ L ID++E+ Sbjct: 301 IQDTTLGHMVLLLTGNNNLIDSAVTHLAGTGIDIQEI 337 >C4RXH1.1 C4RXH1_YERBE Methionine import ATP-binding protein metN 2 Length = 338 Score = 441 bits (1134), Expect = e-122, Method: Compositional matrix adjust. Identities = 212/338 (62%), Positives = 266/338 (78%) Query: 3 MIELRDVYKTYLRKGISNDAIKGVQLKVEKGDIFGVIGYSGAGKSTLIRLVNYLERPTKG 62 MIEL+ + KT+ R+GI A+ V L V GDIFG+IGYSGAGKSTL+R+VN LE PT G Sbjct: 1 MIELQHISKTFERQGIKLQALNNVSLTVADGDIFGIIGYSGAGKSTLLRMVNSLESPTSG 60 Query: 63 QVFVDGHDLGAYSDKELRAAKKNIGMIFQHFNLLESKKVFDNVAIPLVLLKKNKNEIHQR 122 V +DG +L +S ++LR KKNIGMIFQ+FNLLESK VF NVA+PL+LL KNK I +R Sbjct: 61 NVIIDGKNLHDFSHEQLRLLKKNIGMIFQNFNLLESKTVFKNVAMPLILLGKNKKFIQER 120 Query: 123 VMELLEFVGLSDKAGSYPSELSGGQKQRVGIARALASNPSVLLCDEATSALDPQTTRSIL 182 V ELL+FVGL DK+ S+P+ELSGGQKQRVGIARALA+NPS+LLCDEATS+LDPQTT IL Sbjct: 121 VAELLDFVGLGDKSHSFPNELSGGQKQRVGIARALATNPSILLCDEATSSLDPQTTAQIL 180 Query: 183 QLLKKINAEYHITIMIITHEMSVIQEICNKVAVMEGGRIIEQGSVLEVFGHPQHPTTQNF 242 LLKKIN +Y+IT+++ITHEMSVIQ+ICNKVAVME G+IIEQGSVL VFGHP HPTT NF Sbjct: 181 LLLKKINQQYNITVLLITHEMSVIQKICNKVAVMENGQIIEQGSVLTVFGHPTHPTTLNF 240 Query: 243 VSTVIQTSMTSSMRKTLITDEGSRMYKLEFFGERASEPVLYELIRSSDVKVNILFANMTE 302 V TVI+ S+ S++K L R ++L F G A++PV+ +LI+ D+ VNILFANM+E Sbjct: 241 VRTVIKDSLPESVKKLLNNSHAGRQFRLAFMGSIATQPVINQLIKQYDIGVNILFANMSE 300 Query: 303 IQDTTLGTMIIQLKGSSEEMDKALDFLKRREIDLEEVD 340 IQDTTLG M++ L G + +D A+ +L ID++E++ Sbjct: 301 IQDTTLGHMVLLLTGENHTIDGAVSYLTETGIDIQEIN 338 >C4SE98.1 C4SE98_YERMO Methionine import ATP-binding protein metN 2 Length = 338 Score = 438 bits (1127), Expect = e-121, Method: Compositional matrix adjust. Identities = 211/337 (62%), Positives = 265/337 (78%) Query: 3 MIELRDVYKTYLRKGISNDAIKGVQLKVEKGDIFGVIGYSGAGKSTLIRLVNYLERPTKG 62 MIEL+ + KT+ RKGI A+ V L VE GDIFG+IGYSGAGKSTL+R+VN LE PT G Sbjct: 1 MIELQHISKTFERKGIKLQALNNVSLTVENGDIFGIIGYSGAGKSTLLRMVNSLESPTSG 60 Query: 63 QVFVDGHDLGAYSDKELRAAKKNIGMIFQHFNLLESKKVFDNVAIPLVLLKKNKNEIHQR 122 V +DG +L +S ++LR KK+IGMIFQ+FNLLESK V+ NVA+PL+LL KNK I +R Sbjct: 61 NVIIDGKNLHDFSQEQLRLLKKDIGMIFQNFNLLESKTVYKNVAMPLILLGKNKKFIQER 120 Query: 123 VMELLEFVGLSDKAGSYPSELSGGQKQRVGIARALASNPSVLLCDEATSALDPQTTRSIL 182 V ELL+FVGL DK+ S+P+ELSGGQKQRVGIARALA+NPS+LLCDEATS+LDPQTT IL Sbjct: 121 VAELLDFVGLGDKSHSFPNELSGGQKQRVGIARALATNPSILLCDEATSSLDPQTTAQIL 180 Query: 183 QLLKKINAEYHITIMIITHEMSVIQEICNKVAVMEGGRIIEQGSVLEVFGHPQHPTTQNF 242 LLKKIN +Y+IT+++ITHEMSVIQ+ICNKVAVME G+IIEQGSVL VFGHP HPTT NF Sbjct: 181 LLLKKINQQYNITVLLITHEMSVIQKICNKVAVMENGQIIEQGSVLTVFGHPTHPTTLNF 240 Query: 243 VSTVIQTSMTSSMRKTLITDEGSRMYKLEFFGERASEPVLYELIRSSDVKVNILFANMTE 302 V T I+ S+ S++K L R ++L F G A++PV+ +LI+ D+ VNILFANM+E Sbjct: 241 VRTAIKDSLPESVKKLLNHSHAGRQFRLAFMGSIATQPVINQLIKQYDIGVNILFANMSE 300 Query: 303 IQDTTLGTMIIQLKGSSEEMDKALDFLKRREIDLEEV 339 IQDTTLG M++ L G + +D A+ +L ID++E+ Sbjct: 301 IQDTTLGHMVLLLTGENHTIDDAISYLTGTGIDIQEI 337 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,876,201,772 Number of extensions: 74587714 Number of successful extensions: 542733 Number of sequences better than 1.0e-05: 98482 Number of HSP's gapped: 407390 Number of HSP's successfully gapped: 106977 Length of query: 349 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 213 Effective length of database: 1,779,438,163 Effective search space: 379020328719 Effective search space used: 379020328719 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)