BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0534.0017.p (235 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C2VF53.1 C2VF53_BACCE Putative uncharacterized protein 257 5e-67 A8GB02.1 A8GB02_SERP5 Amidohydrolase EC=3.5.1.14 257 6e-67 C2PIH8.1 C2PIH8_BACCE Putative uncharacterized protein 257 6e-67 C2UYM7.1 C2UYM7_BACCE Putative uncharacterized protein 256 1e-66 C2U0T9.1 C2U0T9_BACCE Putative uncharacterized protein 255 2e-66 >C2VF53.1 C2VF53_BACCE Putative uncharacterized protein Length = 381 Score = 257 bits (657), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 123/222 (55%), Positives = 160/222 (72%), Gaps = 4/222 (1%) Query: 14 LEQHLIDVRRSLHREPELSYEEFKTTDKLRTWLAGAHISVLDLPLPTGLIAQV-GQNEGP 72 L + LI +RR LH PELSYEEF+TT ++TWL A+I+++D L TG+IA++ G GP Sbjct: 8 LTEKLISIRRHLHEYPELSYEEFETTKAIKTWLEEANITIIDSNLETGIIAEISGNQNGP 67 Query: 73 VVAIRCDIDALPVEEQTGLPFASEIPGKMHACGHDFHTAVILGAAMLLKAREAELPGKVK 132 ++AIR DIDALP++E+T LP+ S+I GKMHACGHDFHTA ILG A LLK +E+ L G V+ Sbjct: 68 IIAIRADIDALPIQEETNLPYTSKIQGKMHACGHDFHTAAILGTAFLLKEKESSLNGTVR 127 Query: 133 ILFQPAEETGHGAESVLASGGLGDVAAIFGLHNSPELPTGSFGTRTGPLTAGVDRFEISV 192 +FQPAEE+ +GA V+ +G L DV AIFG+HN P+LP G+ G + GPL AGVDRFEI + Sbjct: 128 FIFQPAEESSNGACKVIEAGHLHDVQAIFGMHNKPDLPVGTIGIKDGPLMAGVDRFEIEI 187 Query: 193 EGIGAHAATPENGVDAIVTAAQXXXXLP---RSKPSSAVNAV 231 G+G HAA P+ GVD IV ++Q L SS+ NAV Sbjct: 188 HGVGTHAAVPDAGVDPIVASSQIVMALQTIVSRNISSSHNAV 229 >A8GB02.1 A8GB02_SERP5 Amidohydrolase EC=3.5.1.14 Length = 387 Score = 257 bits (657), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 125/222 (56%), Positives = 164/222 (73%), Gaps = 1/222 (0%) Query: 10 MMQALEQHLIDVRRSLHREPELSYEEFKTTDKLRTWLAGAHISVLDLPLPTGLIAQVGQN 69 M L + ++ RR LH+ PELS EF TT +L WL A I +L L L TG++A++G Sbjct: 1 MTSQLAEKIVAYRRELHQNPELSNHEFATTARLTRWLEEAGIRILPLALKTGVVAEIGSG 60 Query: 70 EGPVVAIRCDIDALPVEEQTGLPFASEIPGKMHACGHDFHTAVILGAAMLLKAREAELPG 129 +GPV+A+R DIDALP+EE +G+PF+S+ G MHACGHDFHT+V+LGAA LLKAREA LPG Sbjct: 61 KGPVIALRGDIDALPIEEISGVPFSSQNSGVMHACGHDFHTSVMLGAAHLLKAREATLPG 120 Query: 130 KVKILFQPAEETGHGAESVLASGGLGDVAAIFGLHNSPELPTGSFGTRTGPLTAGVDRFE 189 V+I FQPAEET +GA+ ++ +G L +VAA+FGLHN+PELPTG+F TR G A VDRF+ Sbjct: 121 TVRIFFQPAEETFNGAQHLIDAGALDNVAAVFGLHNAPELPTGTFATRAGAFYANVDRFQ 180 Query: 190 ISVEGIGAHAATPENGVDAIVTAAQXXXXLPRSKPSSAVNAV 231 I + G GAHAA PE GVD IVTA+Q L ++ PS + +++ Sbjct: 181 ILITGKGAHAAKPEQGVDTIVTASQIVNAL-QTLPSRSFSSL 221 >C2PIH8.1 C2PIH8_BACCE Putative uncharacterized protein Length = 381 Score = 257 bits (656), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 121/225 (53%), Positives = 164/225 (72%), Gaps = 4/225 (1%) Query: 11 MQALEQHLIDVRRSLHREPELSYEEFKTTDKLRTWLAGAHISVLDLPLPTGLIAQV-GQN 69 ++ + + LI +RR+LH PELSYEEF+TT ++ WL +I++++ L TG+IA++ G N Sbjct: 5 LEQITEMLISIRRNLHEHPELSYEEFETTKTIKNWLEEKNITIINSSLETGVIAEISGNN 64 Query: 70 EGPVVAIRCDIDALPVEEQTGLPFASEIPGKMHACGHDFHTAVILGAAMLLKAREAELPG 129 GP++AIR DIDALP++E+T LP+AS+IPGKMHACGHDFHTA I+GAA LLK +E+ L G Sbjct: 65 SGPIIAIRADIDALPIQEETNLPYASKIPGKMHACGHDFHTAAIIGAAYLLKEKESSLGG 124 Query: 130 KVKILFQPAEETGHGAESVLASGGLGDVAAIFGLHNSPELPTGSFGTRTGPLTAGVDRFE 189 V+ +FQPAEE+ +GA V+ +G L V AIFG+HN P+LP G+ G + GPL AGVDRFE Sbjct: 125 TVRFIFQPAEESSNGACKVIEAGHLHGVQAIFGMHNKPDLPVGTIGIKDGPLMAGVDRFE 184 Query: 190 ISVEGIGAHAATPENGVDAIVTAAQXXXXLP---RSKPSSAVNAV 231 I + G+G HAA P+ GVD IV ++Q L SS+ NAV Sbjct: 185 IEIHGVGTHAAVPDAGVDPIVASSQIVMALQTIVSRNISSSHNAV 229 >C2UYM7.1 C2UYM7_BACCE Putative uncharacterized protein Length = 381 Score = 256 bits (654), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 122/222 (54%), Positives = 160/222 (72%), Gaps = 4/222 (1%) Query: 14 LEQHLIDVRRSLHREPELSYEEFKTTDKLRTWLAGAHISVLDLPLPTGLIAQV-GQNEGP 72 L + LI +RR LH PELSYEEF+TT ++ WL A+I+++D L TG+IA++ G GP Sbjct: 8 LAEKLISIRRHLHEYPELSYEEFETTKAIQNWLEEANITIIDSNLKTGIIAEISGNQNGP 67 Query: 73 VVAIRCDIDALPVEEQTGLPFASEIPGKMHACGHDFHTAVILGAAMLLKAREAELPGKVK 132 ++AIR DIDALP++E+T LP+ S+I GKMHACGHDFHTA ILG A LLK +E+ L G V+ Sbjct: 68 IIAIRADIDALPIQEETNLPYTSKIQGKMHACGHDFHTAAILGTAFLLKEKESSLNGTVR 127 Query: 133 ILFQPAEETGHGAESVLASGGLGDVAAIFGLHNSPELPTGSFGTRTGPLTAGVDRFEISV 192 +FQPAEE+ +GA V+ +G L DV AIFG+HN P+LP G+ G + GPL AGVDRFEI + Sbjct: 128 FIFQPAEESSNGACKVIEAGHLHDVQAIFGMHNKPDLPVGTIGIKDGPLMAGVDRFEIEI 187 Query: 193 EGIGAHAATPENGVDAIVTAAQXXXXLP---RSKPSSAVNAV 231 +G+G HAA P+ GVD IV ++Q L SS+ NAV Sbjct: 188 QGVGTHAAVPDAGVDPIVASSQIVMALQTIVSRNISSSHNAV 229 >C2U0T9.1 C2U0T9_BACCE Putative uncharacterized protein Length = 381 Score = 255 bits (652), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 122/222 (54%), Positives = 159/222 (71%), Gaps = 4/222 (1%) Query: 14 LEQHLIDVRRSLHREPELSYEEFKTTDKLRTWLAGAHISVLDLPLPTGLIAQV-GQNEGP 72 L + LI +RR LH PELSYEEF+TT ++TWL A+I+++D L TG+IA++ G GP Sbjct: 8 LTEKLISIRRHLHEYPELSYEEFETTKAIKTWLEEANITIIDSNLETGIIAEISGNQNGP 67 Query: 73 VVAIRCDIDALPVEEQTGLPFASEIPGKMHACGHDFHTAVILGAAMLLKAREAELPGKVK 132 ++AIR DIDALP++E+T LP+ S+I GKMHACGHDFHTA ILG A LLK +E+ L G V+ Sbjct: 68 IIAIRADIDALPIQEETNLPYTSKIQGKMHACGHDFHTAAILGTAFLLKEKESSLNGTVR 127 Query: 133 ILFQPAEETGHGAESVLASGGLGDVAAIFGLHNSPELPTGSFGTRTGPLTAGVDRFEISV 192 +FQPAEE+ +GA V+ +G L DV AIFG+HN P+LP G+ G + GPL AGVDRFEI + Sbjct: 128 FIFQPAEESSNGACKVIEAGHLHDVQAIFGMHNKPDLPVGTIGIKDGPLMAGVDRFEIEI 187 Query: 193 EGIGAHAATPENGVDAIVTAAQXXXXLP---RSKPSSAVNAV 231 G+G H A P+ GVD IV ++Q L SS+ NAV Sbjct: 188 HGVGTHVAVPDAGVDPIVASSQIVMALQTIVSRNISSSHNAV 229 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,407,232,561 Number of extensions: 59634177 Number of successful extensions: 149161 Number of sequences better than 1.0e-05: 3012 Number of HSP's gapped: 142992 Number of HSP's successfully gapped: 3014 Length of query: 235 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 104 Effective length of database: 1,826,543,238 Effective search space: 189960496752 Effective search space used: 189960496752 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)