BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0534.0015.p (216 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q65DF8.1 Q65DF8_BACLD Putative uncharacterized protein 129 2e-28 A1RAK2.1 A1RAK2_ARTAT Transcriptional regulator, GntR family 118 4e-25 B8H8D2.1 B8H8D2_ARTCA Transcriptional regulator, GntR family 112 2e-23 A0JWE9.1 A0JWE9_ARTS2 Transcriptional regulator, GntR family 112 2e-23 A0P3C9.1 A0P3C9_9RHOB Transcriptional regulator, GntR family pro... 105 3e-21 >Q65DF8.1 Q65DF8_BACLD Putative uncharacterized protein Length = 223 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/206 (37%), Positives = 112/206 (54%), Gaps = 8/206 (3%) Query: 2 SKDNTYFELKQKIIDNELKPGQNVHEESLAALLGVSRTPLREAIQRLENEDFLVRQPNGR 61 + D Y EL+ KII+ E P + + E+SLA L +SRTPLR+A+ RLE E + +QPNGR Sbjct: 12 ASDYAYNELRTKIIELEYPPSEQLAEDSLAKGLNISRTPLRQALYRLELEGLVSKQPNGR 71 Query: 62 LKVAPITVEELEEIFLVRGMLEGHIAKNAAKNATPQDIQHMTAMVEKTNQSLYLGSDKDA 121 L+V PI++ E +E+F VR LEG + AA+ TP+ + + +E + G D Sbjct: 72 LRVCPISLAEAKEVFKVREALEGLLTAEAAQLVTPESLHQLEDRIELMKLAAVKGRKTDT 131 Query: 122 LPFGFEFHDYLSEISGLHTFERILSQLRDHTLRYCRYVSLHGEWN-----SQAYEEHSLI 176 + +G EFH L IS T +R L QL RY R + G N S ++ EH I Sbjct: 132 VKYGSEFHSILHAISTNATAKRFLDQLESRIERYRR---ISGYKNPDYKPSVSFNEHLDI 188 Query: 177 LQRIVERDEEGAEKVMQDHISNSLST 202 + E++ AE M+ HI SL + Sbjct: 189 FNAVKEKNSVLAEAAMRSHIKRSLRS 214 >A1RAK2.1 A1RAK2_ARTAT Transcriptional regulator, GntR family Length = 221 Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 65/191 (34%), Positives = 111/191 (58%), Gaps = 2/191 (1%) Query: 6 TYFELKQKIIDNELKPGQNVHEESLAALLGVSRTPLREAIQRLENEDFLVRQPNGRLKVA 65 Y ELK++I+ ELKPG+ ++E ++A L VSRTPLREAI+RL +E+ L +QP G + V Sbjct: 14 VYGELKRQILSLELKPGERIYEPAMATALQVSRTPLREAIRRLISENLLEQQPTGGVMVP 73 Query: 66 PITVEELEEIFLVRGMLEGHIAKNAAKNATPQDIQHMTAMVEKTNQSLYLGSDKDALPFG 125 + + + E++ VR LE +A+ A NA+ D++ + +V + N ++ +D +A+ +G Sbjct: 74 ALDEKAISELYDVRAALESLMAREACANASAADLEELRGIVAR-NAAMVQFAD-EAMKYG 131 Query: 126 FEFHDYLSEISGLHTFERILSQLRDHTLRYCRYVSLHGEWNSQAYEEHSLILQRIVERDE 185 H ++ I+G +R Q+ H RY + + E +A H L+++ I +D Sbjct: 132 VALHAAIARIAGNSWAQRFHGQIGSHVERYRYFTNNAPERRDEALANHRLLVEAIASKDP 191 Query: 186 EGAEKVMQDHI 196 E A K+ DH+ Sbjct: 192 EKAAKIAFDHV 202 >B8H8D2.1 B8H8D2_ARTCA Transcriptional regulator, GntR family Length = 221 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 111/202 (54%), Gaps = 2/202 (0%) Query: 6 TYFELKQKIIDNELKPGQNVHEESLAALLGVSRTPLREAIQRLENEDFLVRQPNGRLKVA 65 Y ELK++I+ +LKPG+ ++E ++A L VSRTPLREAI+RL +E+ L +QP G + V Sbjct: 14 VYAELKRRILSLDLKPGERIYEPAMATALQVSRTPLREAIRRLISENLLEQQPTGGVVVP 73 Query: 66 PITVEELEEIFLVRGMLEGHIAKNAAKNATPQDIQHMTAMVEKTNQSLYLGSDKDALPFG 125 + E+ E++ VR +E +A+NA ATP D+ + ++ + N +L +D DA+ G Sbjct: 74 VLDEAEISELYEVRAAVESLMARNACLKATPADLDELHGILAR-NAALVEFAD-DAMRQG 131 Query: 126 FEFHDYLSEISGLHTFERILSQLRDHTLRYCRYVSLHGEWNSQAYEEHSLILQRIVERDE 185 H ++ I+G R Q+ RY Y + QA +H +++ I D Sbjct: 132 MALHARIAVIAGNSWAGRFHDQVSSQMERYRHYTNSTQRRRDQALAQHRALVEAIATGDP 191 Query: 186 EGAEKVMQDHISNSLSTALKRL 207 E A K+ DH+ + A++ L Sbjct: 192 EQAAKMAFDHVMGARDAAVRAL 213 >A0JWE9.1 A0JWE9_ARTS2 Transcriptional regulator, GntR family Length = 221 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 66/200 (33%), Positives = 109/200 (54%), Gaps = 2/200 (1%) Query: 6 TYFELKQKIIDNELKPGQNVHEESLAALLGVSRTPLREAIQRLENEDFLVRQPNGRLKVA 65 Y ELK++I+ ELKPG+ + E ++A L VSRTPLREAI+RL +E L +QP G + V Sbjct: 14 VYGELKRRILTLELKPGERIFEPAMATALQVSRTPLREAIRRLISEGLLEQQPTGGVLVP 73 Query: 66 PITVEELEEIFLVRGMLEGHIAKNAAKNATPQDIQHMTAMVEKTNQSLYLGSDKDALPFG 125 + + E++ VR LE +A+ A ATP DI + +VE+ N ++ +D +A+ +G Sbjct: 74 NLNEGVIAELYGVRAALESLMAREACAKATPADIAALEGIVER-NAAMVEFAD-EAMKYG 131 Query: 126 FEFHDYLSEISGLHTFERILSQLRDHTLRYCRYVSLHGEWNSQAYEEHSLILQRIVERDE 185 H +S+I+G + Q+ RY + + E A +H ++++ I Sbjct: 132 MSLHTAISDIAGNSWARKFHDQVSSQMERYRHFTNNTQERRDHALADHRILVEAIASGKP 191 Query: 186 EGAEKVMQDHISNSLSTALK 205 E A K+ DH+ + A++ Sbjct: 192 EAAAKIAFDHVVGARDAAVR 211 >A0P3C9.1 A0P3C9_9RHOB Transcriptional regulator, GntR family protein Length = 229 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 71/205 (34%), Positives = 104/205 (50%), Gaps = 24/205 (11%) Query: 10 LKQKIIDNELKPGQNVHEESLAALLGVSRTPLREAIQRLENEDFLVRQPNGRLKVAPITV 69 L++ I+ ELKPG+ V E+ L + VSRTPLREA++ + + + +PN V PITV Sbjct: 24 LRELIVSGELKPGEKVPEKDLCEMFSVSRTPLREALKVMAADGLVYLEPNRGAWVTPITV 83 Query: 70 EELEEIFLVRGMLEGHIAKNAAKNATPQDIQHMTAMVEKTNQSLYLGSDKDALPFGFEFH 129 E++EE+F V G LE + A +N T +I H+ ++ EK + G+ D E H Sbjct: 84 EDIEEVFPVMGALEALSGELACQNITDAEIAHVRSLHEKMVREYEAGNLADYFHINQEIH 143 Query: 130 DYLSEISGLHTFERILSQLRDHTL-----------RYCRYVS-LHGEWNSQAYEEHSLIL 177 E IL+ R+ TL R RYV+ + E QA EEH LIL Sbjct: 144 ------------EAILAAARNKTLSTQYMSLATRVRRARYVANMTAERWKQATEEHELIL 191 Query: 178 QRIVERDEEGAEKVMQDHISNSLST 202 + RD ++++DH+ N L T Sbjct: 192 NCLEARDGARLAEILKDHLKNKLET 216 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.133 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,238,339,166 Number of extensions: 49514830 Number of successful extensions: 153300 Number of sequences better than 1.0e-05: 3478 Number of HSP's gapped: 152583 Number of HSP's successfully gapped: 3478 Length of query: 216 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 86 Effective length of database: 1,835,964,253 Effective search space: 157892925758 Effective search space used: 157892925758 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)