BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0534.0012.p (914 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z8V4.1 C0Z8V4_BREBN Probable transcriptional regulator 900 0.0 B3KC48.1 B3KC48_9BACI Regulatory protein LuxR 890 0.0 A9B4I5.1 A9B4I5_HERA2 ATP-dependent transcriptional regulator, M... 679 0.0 A9B6R2.1 A9B6R2_HERA2 ATP-dependent transcriptional regulator, M... 632 e-179 A9AUL1.1 A9AUL1_HERA2 ATP-dependent transcriptional regulator, M... 606 e-171 >C0Z8V4.1 C0Z8V4_BREBN Probable transcriptional regulator Length = 873 Score = 900 bits (2326), Expect = 0.0, Method: Compositional matrix adjust. Identities = 477/896 (53%), Positives = 592/896 (66%), Gaps = 23/896 (2%) Query: 19 MTITIVSAKLFIPPARSKSVVRPRLLERLNGSLQGKLTVLSAAAGYGKTTLASEWLAVCG 78 MTI IV+ KL++PP R K+V R RL+E+LN L KLTV+SA AG GKTTL SEWLA Sbjct: 1 MTIPIVTTKLYMPPPRLKTVTRHRLIEQLNEGLNRKLTVISAPAGSGKTTLVSEWLASGD 60 Query: 79 RRATWLSLDAGDNDPARFLTYLFAACRSIGVNIGEGVFAVLQSPQPPPAESLLTALLNEI 138 R W+S+D GDNDPA F TYLF A ++IG NIG G++ + SPQP E +++ LL+EI Sbjct: 61 RPFAWISMDEGDNDPAHFFTYLFTALQNIGPNIGSGIYPLFHSPQPLSIELMISTLLHEI 120 Query: 139 SSDSEPSILVLDDYHVITAEPVNQAVAFLLEHLPPQMHLVIATREDXXXXXXXXXXXHQL 198 + S P +LV DDYHV+ P++ A++FLLE +P QMHLVIATRE+ +QL Sbjct: 121 IAISNPFVLVFDDYHVLKTGPLDDAISFLLERMPRQMHLVIATREEPRLPLARLRVRNQL 180 Query: 199 TELRAADLRFNAAEAAEFLGGVMGLTLSAKDVMLLESRTEGWIAGLQLAALSMQGRNDTT 258 E+R +DLRF +EAAEFL VM + LS +++ LLE+RTEGWIAGLQLAALS++ + D Sbjct: 181 NEVRVSDLRFTYSEAAEFLEKVMEVELSPENIALLEARTEGWIAGLQLAALSIKEQIDVE 240 Query: 259 GFIQSFTGSHKFVLDYLIEEVLQQQPASIQAFLQFTSVLDKMCGPLCDAVLGKDSEGASR 318 F+ SF+GSH F+LDYL+EEVL QQ AS QAFL TS+LD++ GPLCDAV + Sbjct: 241 AFLPSFSGSHPFILDYLVEEVLTQQSASTQAFLLHTSILDRLSGPLCDAVFSQSD--MCL 298 Query: 319 STGQRTLEYLEHANLFLIPLDNERRWYRYHHLFADLLRERLNQGFFPSEGGKEKTVSELH 378 +GQ TLE+LE ANLF++PLD+ERRWYRYHHLFADLLR+RL Q G E+ ++ELH Sbjct: 299 GSGQETLEFLERANLFIVPLDSERRWYRYHHLFADLLRQRLRQRVSSITGEGERILAELH 358 Query: 379 LRASQWYEDNXXXXXXXXXXXXXXXXXXXXXLTEGEGMPLLFRGAVTPVLNWLQSLPEEE 438 RAS WYEDN L EGE MPLLFRG V PVLNWL+SLP EE Sbjct: 359 TRASIWYEDNGFEMEAFHHAVAANDLSRAARLVEGERMPLLFRGGVVPVLNWLESLPREE 418 Query: 439 LDAIPSLRVMYASALLMTGRLSSVEQKLQAAEQALHGAVLDEKTRDLIGHIASIRAMLAV 498 LD P+L VMYASALLMTG+++ VE KL AAE+A+ G D RD +GHIA+IRA LAV Sbjct: 419 LDVRPALWVMYASALLMTGQITGVEPKLLAAEKAMQGMGQDAGARDTLGHIAAIRATLAV 478 Query: 499 SKHQADPIAAESRRALEYLHPDNLAVRAAAAWTLGYAYQLQGEQGLAGAAYNEALSVSKR 558 S HQA+ I AE++RAL YLHPDNL VR A W+LGYAY LQG + A AY EALS+SK+ Sbjct: 479 SMHQAEEIMAEAKRALAYLHPDNLPVRTATTWSLGYAYHLQGNRTAATKAYQEALSISKK 538 Query: 559 IGHVMISIMATLGRGNIQEAENRLPAAAGSYLQVLEWAGDPPLPVACEAHLGLARIYYEW 618 IGHV+I++MATLG +QEA+N+L AA +Y V + AG PPLP ACEAHLGLARI+YEW Sbjct: 539 IGHVVITMMATLGLAKLQEADNQLHMAAETYQHVQKLAGSPPLPAACEAHLGLARIFYEW 598 Query: 619 NEWDTALMHVQQSILLAGQFEDSDREXXXXXXXXXXXXXXXXXSEAAAILEQADDFARQR 678 N+ TA +H QQSI LA Q E +DR S AA +L A+ AR++ Sbjct: 599 NDLHTAELHGQQSIQLARQLEQTDRVVAAQVFLARLKLAQGDVSGAATMLANAEYVARKQ 658 Query: 679 QYWTQIPHIAAVQVPVMLRQGNLEAAAILAEQHGLPLSLXXXXXXXXXXXXXXXXXXXXX 738 + Q+P IA VQV ++L+Q NL AAA LA +H LP+ Sbjct: 659 GFVMQMPPIAEVQVLILLQQDNLTAAARLALRHDLPILQARVLLAQGDTSAALAVLEPLL 718 Query: 739 RQTAVKGRQDERLKGMILYAAALYKCGDNSGAAHTLAEAMRIAEPGGCIRSFVDEGPEAE 798 Q K +DERLK M+L A AL GD + AA + + + IAEPGG IR+FVDEG + + Sbjct: 719 VQAEAKQIEDERLKIMLLQAVALQVQGDQAKAAQIMKDVLVIAEPGGFIRTFVDEGSQMK 778 Query: 799 RLLRGSEIPGEMLDYRRKLLAAFAAETPETLEILTSSQTGASRHHIRPDQPLFEKLSRRE 858 R+L + + + Y KLLA F HH L E LS RE Sbjct: 779 RILHDATVHRMLPRYIEKLLAEFEP------------------HHA---DSLIEPLSERE 817 Query: 859 LEILQLIAQGLSNREIGDRMFLALSTVKGYNRNIFDKLQVSRRTEAIARARMLGLL 914 LEILQLI +GLSNR+I ++FLALSTVKG+NRN+FDKLQV RRTEA+ARAR LGLL Sbjct: 818 LEILQLIEKGLSNRDIAQQLFLALSTVKGHNRNVFDKLQVQRRTEAVARARQLGLL 873 >B3KC48.1 B3KC48_9BACI Regulatory protein LuxR Length = 902 Score = 890 bits (2299), Expect = 0.0, Method: Compositional matrix adjust. Identities = 482/911 (52%), Positives = 619/911 (67%), Gaps = 24/911 (2%) Query: 19 MTITIVSAKLFIPPARSKSVVRPRLLERLNGSLQG--KLTVLSAAAGYGKTTLASEWLAV 76 M+ TI+S KL+IP RS++V+RPRL+ERLN L+ K+T++SA+AG GKTTL S+W+ Sbjct: 1 MSTTILSTKLYIPSPRSQAVLRPRLIERLNEGLRQHRKMTMISASAGCGKTTLLSQWIGG 60 Query: 77 CGRRATWLSLDAGDNDPARFLTYLFAACRSIGVNIGEGVFAVLQ--SPQPPPAESLLTAL 134 C + WLSLD GD +P+RFLTYL AA ++IGV++GE + + L SP P P E+++ A+ Sbjct: 61 CPQPVAWLSLDKGDREPSRFLTYLLAALQTIGVDVGERMVSTLHAPSPHPLPVEAIVMAM 120 Query: 135 LNEISSDSEPSILVLDDYHVITAEPVNQAVAFLLEHLPPQMHLVIATREDXXXXXXXXXX 194 LN+I++ + ILVLDDYHV+ ++P+++A+ FL+EH+PPQMH+VIA+R+D Sbjct: 121 LNQITAKPDRFILVLDDYHVLDSKPIDRALGFLIEHMPPQMHVVIASRKDPDLPVARLRS 180 Query: 195 XHQLTELRAADLRFNAAEAAEFLGGVMGLTLSAKDVMLLESRTEGWIAGLQLAALSMQGR 254 +QLTE+R DLRF + E +EF+ VMGL LS +D LLESRTEGWIAGLQLAALS+QG Sbjct: 181 RNQLTEVRTPDLRFTSTETSEFMWQVMGLDLSREDAALLESRTEGWIAGLQLAALSLQGH 240 Query: 255 NDTTGFIQSFTGSHKFVLDYLIEEVLQQQPASIQAFLQFTSVLDKMCGPLCDAVLGKDSE 314 D FI+SF+GSH +VLDYLIEE LQQQP S+Q FL TS LD+MCG LC+ VL ++ Sbjct: 241 PDAASFIRSFSGSHHYVLDYLIEEALQQQPESVQDFLLRTSFLDRMCGSLCEYVLQGEAG 300 Query: 315 GASRS--TGQRTLEYLEHANLFLIPLDNERRWYRYHHLFADLLRERLNQGFFPSEGGKEK 372 + + +GQ TLEYLE ANLF++PLDNERRWYRYHHLF D LR+RL++ + GGK + Sbjct: 301 DSPVTAVSGQETLEYLERANLFIVPLDNERRWYRYHHLFLDALRQRLSRKGVSAVGGK-R 359 Query: 373 TVSELHLRASQWYEDNXXXXXXXXXXXXXXXXXXXXXLTEGEGMPLLFRGAVTPVLNWLQ 432 VS+LH RAS W+E + L EGEGMPL+FRGA+ PVL+WL Sbjct: 360 DVSDLHRRASDWHERHELLLEAFQHAIAAKDVDRAARLIEGEGMPLVFRGAIHPVLDWLD 419 Query: 433 SLPEEELDAIPSLRVMYASALLMTGRLSSVEQKLQAAEQALHGAVLDEKTRDLIGHIASI 492 SLP+ ELDA P+L VM+ASALLM G+++ VE KLQAAE L D RDLIGHIASI Sbjct: 420 SLPKAELDARPALYVMHASALLMVGQMNGVEHKLQAAEVHLQAGE-DGNIRDLIGHIASI 478 Query: 493 RAMLAVSKHQADPIAAESRRALEYLHPDNLAVRAAAAWTLGYAYQLQGEQGLAGAAYNEA 552 RA LAVSKHQ + I ESRRALEYL P NL VR AA WTLGYAYQLQG++ AG AY+EA Sbjct: 479 RATLAVSKHQPEVIMTESRRALEYLSPHNLPVRTAAMWTLGYAYQLQGDRAAAGQAYHEA 538 Query: 553 LSVSKRIGHVMISIMATLGRGNIQEAENRLPAAAGSYLQVLEWAGDPPLPVACEAHLGLA 612 +++S++IGH MI++MATLG G +QE +N+L AAA +Y +VLE AGDPP P ACEAHLGLA Sbjct: 539 VAISQKIGHFMIAMMATLGLGLLQETDNQLYAAAVTYRRVLELAGDPPPPAACEAHLGLA 598 Query: 613 RIYYEWNEWDTALMHVQQSILLAGQFEDSDREXXXXXXXXXXXXXXXXXSEAAAILEQAD 672 RI EWN+ D A H +++ LA QF+ +DR EAAA+L +AD Sbjct: 599 RICSEWNDLDAAERHGLKALQLAAQFDQTDRAVACEVFLARLKLSRGEVREAAAMLAKAD 658 Query: 673 DFARQRQYWTQIPHIAAVQVPVMLRQGNLEAAAILAEQHGLPLSLXXXXXXXXXXXXXXX 732 RQ+Q+ +Q+P IA QV V+L+QGN A+ LA++HGLPLS Sbjct: 659 RLGRQQQFMSQLPFIAEAQVLVLLQQGNFGEASQLAQEHGLPLSQARVLLAKGQAGAALA 718 Query: 733 XXXXXXRQTAVKGRQDERLKGMILYAAALYKCGDNSGAAHTLAEAMRIAEPGGCIRSFVD 792 Q K DE+LK M++ A AL+ GD AA A+A+ AEPGG IR F+D Sbjct: 719 IMEPLLAQMEAKEWADEQLKVMVVLALALHAQGDRLKAARIAAKAVAKAEPGGFIRLFID 778 Query: 793 EGPEAERLLRGSEIP---------GEMLDYRRKLLAAFAAETPETLEILTSSQTGASRHH 843 EGP + LLR + M DY KLL AF E E+ + SQ Sbjct: 779 EGPPMQELLRAASASQPIRDATGTQPMHDYLEKLLHAFEMEGLESAGKSSPSQ------- 831 Query: 844 IRPDQPLFEKLSRRELEILQLIAQGLSNREIGDRMFLALSTVKGYNRNIFDKLQVSRRTE 903 ++ + L E LSRRELE+L+LIAQGLSNR+I +++F+ALSTVKG+NR IFDKLQ +RRTE Sbjct: 832 LQLAESLIEPLSRRELEVLRLIAQGLSNRQISEKLFVALSTVKGHNRIIFDKLQATRRTE 891 Query: 904 AIARARMLGLL 914 A+ARAR LGLL Sbjct: 892 AVARARELGLL 902 >A9B4I5.1 A9B4I5_HERA2 ATP-dependent transcriptional regulator, MalT-like, LuxR family Length = 876 Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/899 (43%), Positives = 534/899 (59%), Gaps = 28/899 (3%) Query: 19 MTITIVSAKLFIPPARSKSVVRPRLLERLNGSLQGKLTVLSAAAGYGKTTLASEWLAVCG 78 M I I++ KL IP R V+R L++RL+ + L ++SA AG+GK++L S W A Sbjct: 1 MPIPILATKLHIPQLRPNGVMRSHLIQRLDAASHASLNLISAPAGFGKSSLLSAWHATSQ 60 Query: 79 RRATWLSLDAGDNDPARFLTYLFAACRSIGVNIGEGVFAVLQSPQPPPAESLLTALLNEI 138 R WL+LD DNDP+RF +Y A +++ + ++ + QPP E LT L+NE+ Sbjct: 61 RPMAWLALDERDNDPSRFFSYFVHALQTLIPTLSSASLRLIHT-QPPAIEQALTNLINEL 119 Query: 139 SSDSEPSILVLDDYHVITAEPVNQAVAFLLEHLPPQMHLVIATREDXXXXXXXXXXXHQL 198 S LVLDDYHVI ++QA++FLLEHLP + L+IATRED QL Sbjct: 120 SVVGSSVSLVLDDYHVIENHAIDQALSFLLEHLPASLRLIIATREDPNLPLARLRARGQL 179 Query: 199 TELRAADLRFNAAEAAEFLGGVMGLTLSAKDVMLLESRTEGWIAGLQLAALSMQGRNDTT 258 ELR+ADLRF+ EA FL MGL LS DV LE+RTEGWIAGLQLAALSMQ + D + Sbjct: 180 HELRSADLRFSLDEAQLFLNQAMGLALSPADVAALENRTEGWIAGLQLAALSMQQQTDRS 239 Query: 259 GFIQSFTGSHKFVLDYLIEEVLQQQPASIQAFLQFTSVLDKMCGPLCDAVLGKDSEGASR 318 FI SF+GSH FV+DYL+EEVLQQQ ++Q FL TS+L++MCG LCDA++ + Sbjct: 240 RFIASFSGSHHFVMDYLLEEVLQQQTPAVQQFLLQTSILNRMCGSLCDALVSNGT----- 294 Query: 319 STGQRTLEYLEHANLFLIPLDNERRWYRYHHLFADLLRERLNQGFFPSEGGKEKTVS--E 376 ++GQ+ LE LE AN+F++PLD+ERRWYRYHHLF +LLR+RL + ++ T S + Sbjct: 295 NSGQQMLEQLEQANMFIVPLDHERRWYRYHHLFGELLRQRLQRSL-----AQQATTSLEQ 349 Query: 377 LHLRASQWYEDNXXXXXXXXXXXXXXXXXXXXXLTEGEGMPLLFRGAVTPVLNWLQSLPE 436 LH++AS W+E N L EG+ +PL F+GA+ P++ WLQ+LP Sbjct: 350 LHIQASIWFEANELELEAFEHAAAANDTERAERLIEGKRVPLQFQGALLPIMAWLQALPT 409 Query: 437 EELDAIPSLRVMYASALLMTGRLSSVEQKLQAAEQALHGAVLDEKTRDLIGHIASIRAML 496 L+ PSL V A+ L TG+++ +EQ+LQAAEQA+ L K DLIG IA+IR L Sbjct: 410 NVLNQRPSLWVTAAAVWLATGQVNGIEQRLQAAEQAIDQHPLTPKLHDLIGRIAAIRGTL 469 Query: 497 AVSKHQADPIAAESRRALEYLHPDNLAVRAAAAWTLGYAYQLQGEQGLAGAAYNEALSVS 556 A+S++ A I A+S+RALEYL DNL+ R + W LGYAYQLQG++ A AY +A+S+ Sbjct: 470 ALSQNDASQIIAQSKRALEYLAIDNLSFRTSTVWKLGYAYQLQGKRSAAKQAYEQAISIG 529 Query: 557 KRIGHVMISIMATLGRGNIQEAENRLPAAAGSYLQVLEWAGDPPLPVA-CEAHLGLARIY 615 +R G+++ ++A++G GN+QE+ N+L AA +Y QVLE + LP A C A LGLARIY Sbjct: 530 QRSGNLVTVVLASIGLGNLQESNNQLKLAATTYQQVLEASRQLALPAANCGAELGLARIY 589 Query: 616 YEWNEWDTALMHVQQSILLAGQFEDSDREXXXXXXXXXXXXXXXXXSEAAAILEQADDFA 675 Y+WN+ D A H Q+++ A + +DRE +A+ +LEQA A Sbjct: 590 YQWNQLDQAEQHYQRALQAAQLLQHTDREVACYVIKARLLIAQNQLDQASLLLEQASAAA 649 Query: 676 RQRQYWTQIPHIAAVQVPVMLRQGNLEAAAILAEQHGLPLSLXXXXXXXXXXXXXXXXXX 735 Q ++ TQ IAA QV + L +G ++ A+ +A+ H +P+S Sbjct: 650 HQHRHTTQPAKIAAEQVRIGLMRGQVQQASQIAQTHQIPISQAQVFLAQQQPSAALALLQ 709 Query: 736 XXXRQTAVKGRQDERLKGMILYAAALYKCGDNSGAAHTLAEAMRIAEPGGCIRSFVDEGP 795 D+ L +L + AL D + A L ++ AEP G +R F+D+G Sbjct: 710 PALTIAQTNSWHDQSLWIKVLQSLALAALEDYAQAQQVLKPSLISAEPEGFVRVFLDQGQ 769 Query: 796 EAERLLRGSEIPGEMLDYRRKLLAAFAAETPETLEILTSSQTGASRHHIRPDQPLFEKLS 855 + LL + +Y ++LA F E L T S L E LS Sbjct: 770 AIQNLLSHINLTTSSKNYVNQILAHFTTERMPQLYPTTPS--------------LPEMLS 815 Query: 856 RRELEILQLIAQGLSNREIGDRMFLALSTVKGYNRNIFDKLQVSRRTEAIARARMLGLL 914 +RELEIL LIAQG SN+ I ++ LAL TVKG+NR IF+KLQV RRTEA+ARAR LGLL Sbjct: 816 QRELEILSLIAQGHSNQAICQQLHLALDTVKGHNRRIFEKLQVQRRTEAVARARELGLL 874 >A9B6R2.1 A9B6R2_HERA2 ATP-dependent transcriptional regulator, MalT-like, LuxR family Length = 870 Score = 632 bits (1630), Expect = e-179, Method: Compositional matrix adjust. Identities = 393/899 (43%), Positives = 535/899 (59%), Gaps = 32/899 (3%) Query: 19 MTITIVSAKLFIPPARSKSVVRPRLLERLNGSLQGKLTVLSAAAGYGKTTLASEWLAVCG 78 M + I++ K +IP R VVR +LLERL +LTV+SA AG+GKT L S+W+A C Sbjct: 1 MVMPILTTKCYIPVPRLNGVVRSQLLERLKERHDRRLTVVSAPAGFGKTMLVSQWIANCK 60 Query: 79 RRATWLSLDAGDNDPARFLTYLFAACRSIGVNIGEGVFAVLQSPQPPPAESLLTALLNEI 138 + WL+LD DND ARFL YL AA ++I G + LQ+P+ P E++L LLN++ Sbjct: 61 QPVAWLTLDQNDNDLARFLVYLVAALQTIEPTFGLEIIQRLQAPELPSTETILFLLLNQL 120 Query: 139 SSDSEPSILVLDDYHVITAEPVNQAVAFLLEHLPPQMHLVIATREDXXXXXXXXXXXHQL 198 ++ + SILVLDDYH +TA+P+ +A+ LLE LPPQ+ +V+ TRE+ HQL Sbjct: 121 ATIEQQSILVLDDYHWLTAKPIAEAMRLLLERLPPQLQIVVITREEPDLPLARLRARHQL 180 Query: 199 TELRAADLRFNAAEAAEFLGGVMGLTLSAKDVMLLESRTEGWIAGLQLAALSMQGRNDTT 258 TELR ADLRF AEA +FL M L L A L +TEGWI GLQLAA+SMQG+ ++ Sbjct: 181 TELRVADLRFTVAEAHQFLSQTMELDLLASASQALTDQTEGWITGLQLAAISMQGQQASS 240 Query: 259 GFIQSFTGSHKFVLDYLIEEVLQQQPASIQAFLQFTSVLDKMCGPLCDAVLGKDSEGASR 318 I FTG+H+FVLDYL+EEVLQQQPA IQ FL TS+LD+MCG LC+AVL + Sbjct: 241 PLIDGFTGNHRFVLDYLLEEVLQQQPAEIQTFLLVTSLLDRMCGSLCEAVLAAAPASGA- 299 Query: 319 STGQRTLEYLEHANLFLIPLDNERRWYRYHHLFADLLRERLNQGFFPSEGGKEKTVSELH 378 TL YLE ANLF++PLD+ER WYRYHHLFADLLR+RL S G + + ELH Sbjct: 300 ----ATLAYLERANLFIVPLDHERHWYRYHHLFADLLRQRLA----ISSLGHD--LPELH 349 Query: 379 LRASQWYEDNXXXXXXXXXXXXXXXXXXXXXLTEGEGMPLLFRGAVTPVLNWLQSLPEEE 438 RAS WYE + L + + + L FRG VT +L+WL ++P+ Sbjct: 350 RRASHWYEAHGFGIEAFRHAAAANDVAHIERLIDQQQISLHFRGTVTTLLDWLATVPKSV 409 Query: 439 LDAIPSLRVMYASALLMTGRLSSVEQKLQAAEQALHGAVLDEKTRDLIGHIASIRAMLAV 498 + PSL +AS +LM G+ S V +KL AAE AL D +TR+LIG IA+ RA+L + Sbjct: 410 FEQQPSLWWRHASLMLMLGQTSGVAEKLAAAEAALQSFPDDHQTRNLIGQIAASRAILLL 469 Query: 499 SKHQADPIAAESRRALEYLHPDNLAVRAAAAWTLGYAYQLQGEQGLAGAAYNEALSVSKR 558 +++Q A+S+RALEYL DN+ +A WTLG+ Y G++ A A +++S+++ Sbjct: 470 AQYQFASTLAQSQRALEYLAADNVFSLTSAYWTLGFGYLAHGDRAAARQALTKSVSLAQA 529 Query: 559 IGHVMISIMATLGRGNIQEAENRLPAAAGSYLQVLEWAGDPPLPVACEAHLGLARIYYEW 618 G I I+AT+G G +QE+EN+L AA +Y Q+L AG+ PL + EA+LGLARIYY+W Sbjct: 530 SGSSFIRILATIGLGQLQESENQLYQAAATYQQILALAGEQPLQIIYEAYLGLARIYYQW 589 Query: 619 NEWDTALMHVQQSILLAGQFED-SDREXXXXXXXXXXXXXXXXXSEAAAILEQADDFARQ 677 N+ D A + QQS+ LA Q++ DR +AA L Q RQ Sbjct: 590 NQLDAAERYAQQSLDLAQQYDRLIDRSIICEIWLVRLQLARRANEQAATKLGQLAQTVRQ 649 Query: 678 RQYWTQIPHIAAVQVPVMLRQGNLEAAAILAEQHGLPLSLXXXXXXXXXXXXXXXXXXXX 737 + + ++P I Q+ V+L Q L+AAA LA+ PL Sbjct: 650 QNFTQRLPEIITTQIGVLLAQAELQAAAELAQTIDSPLIQAKVLLAQANAAAALELLQPL 709 Query: 738 XRQTAVKGRQDERLKGMILYAAALYKCGDNSGAAHTLAEAMRIAEPGGCIRSFVDEGPEA 797 Q KG D++L G+IL A A + G + A TL A+ +AEPGG IR F+DEGPE Sbjct: 710 IEQFQAKGWLDQQLHGLILQAVAQQQQGQKAPALRTLQAALAMAEPGGLIRIFIDEGPEL 769 Query: 798 ERLLRGSEIPGEMLD--YRRKLLAAFAAETPETLEILTSSQTGASRHHIRPDQPLFEKLS 855 ++LLR E+ G L Y R++LAAF + ++ S+Q L E LS Sbjct: 770 KQLLR--ELIGRGLGNAYARQILAAFG-----QMPLMPSAQVA-----------LIEPLS 811 Query: 856 RRELEILQLIAQGLSNREIGDRMFLALSTVKGYNRNIFDKLQVSRRTEAIARARMLGLL 914 RELE+L LIA GLSN+ I D+++L+L TVK + RNI+ KL V+ RT A+A+A+ L +L Sbjct: 812 ERELEVLGLIAAGLSNQAIADQLYLSLYTVKAHVRNIYGKLSVNNRTLAVAKAQELAIL 870 >A9AUL1.1 A9AUL1_HERA2 ATP-dependent transcriptional regulator, MalT-like, LuxR family Length = 867 Score = 606 bits (1562), Expect = e-171, Method: Compositional matrix adjust. Identities = 372/897 (41%), Positives = 511/897 (56%), Gaps = 34/897 (3%) Query: 19 MTITIVSAKLFIPPARSKSVVRPRLLERLNGSLQGKLTVLSAAAGYGKTTLASEWLAVCG 78 M I I++ KL IP R + V R RL +L L +L+++ A AG+GKTTL S W Sbjct: 1 MPIEILATKLAIPSLRMQGVPRLRLSAKLERGLNQRLSLVVAPAGFGKTTLLSTWFEQTT 60 Query: 79 RRATWLSLDAGDNDPARFLTYLFAACRSIGVNIGEGVFAVLQSPQPPPAESLLTALLNEI 138 WL+LD DNDP RFL YL AA +++ IG+ V LQ+ QP +E+LL +L+NE+ Sbjct: 61 HAKAWLTLDPRDNDPLRFLGYLVAALQTVEPAIGQSVQQALQAAQPAASENLLISLINEL 120 Query: 139 SSDSEPSILVLDDYHVITAEPVNQAVAFLLEHLPPQMHLVIATREDXXXXXXXXXXXHQL 198 +P ILVLDDYHVI + V+ + FLLEH P ++HLV+ATRED QL Sbjct: 121 HQIRQPIILVLDDYHVIEHQAVDDMLNFLLEHQPTKLHLVLATREDPQLPLARLRARGQL 180 Query: 199 TELRAADLRFNAAEAAEFLGGVMGLTLSAKDVMLLESRTEGWIAGLQLAALSMQGRNDTT 258 E+R ADLRF+ AE+ EFL VMGL L + + LE+RTEGWIAGLQLAALS+QG+ D + Sbjct: 181 NEIRVADLRFSLAESGEFLRNVMGLQLPDQAIAKLEARTEGWIAGLQLAALSLQGQPDPS 240 Query: 259 GFIQSFTGSHKFVLDYLIEEVLQQQPASIQAFLQFTSVLDKMCGPLCDAVLGKDSEGASR 318 FI++F+G H+F+LDYL+ EVLQ Q A IQ FL TS+L++MCGPLCDAVL + Sbjct: 241 SFIETFSGQHQFILDYLLAEVLQHQSAEIQTFLVQTSMLERMCGPLCDAVLNQ------- 293 Query: 319 STGQRTLEYLEHANLFLIPLDNERRWYRYHHLFADLLRERLNQGFFPSEGGKEKTVSELH 378 +T Q LE ++ ANLF++ LD +R WYRYH LF DLLR+RL Q P + ++ LH Sbjct: 294 TTSQALLEQIDQANLFVVALDQQRYWYRYHQLFGDLLRQRLTQQANPQQ------LAGLH 347 Query: 379 LRASQWYEDNXXXXXXXXXXXXXXXXXXXXXLTEGEGMPLLFRGAVTPVLNWLQSLPEEE 438 RAS WY+ L E MPL G V+ +LNWL LP Sbjct: 348 QRASAWYQQQGLLLEAFQHATAAHDYQQAERLM--EQMPLHSNGNVSAMLNWLAGLPTSV 405 Query: 439 LDAIPSLRVMYASALLMTGRLSSVEQKLQAAEQALHGAVLDEKTRDLIGHIASIRAMLAV 498 LD PSL V +A+ LL+ G+ S VE KLQAAE+ L ++ + RDL+G IA+ RA LA+ Sbjct: 406 LDQQPSLWVRFAAILLVLGQTSGVELKLQAAERGLQSLPVNLRNRDLLGQIAAARATLAL 465 Query: 499 SKHQADPIAAESRRALEYLHPDNLAVRAAAAWTLGYAYQLQGEQGLAGAAYNEALSVSKR 558 +++Q + I +++RA EYLHP NL RA A W L YAYQ++GE+ A A++ S++ Sbjct: 466 TQYQIETIIQQAQRAFEYLHPQNLPFRATANWALAYAYQVRGERQNTNIALTAAINFSQQ 525 Query: 559 IGHVMISIMATLGRGNIQEAENRLPAAAGSYLQVLEWAGDPPLPVACEAHLGLARIYYEW 618 I+A++G G +QE+ L AA +Y VL+ AG+ P + EAHLGLARI+Y+W Sbjct: 526 SNDTFTLILASIGMGQLQESNLELHRAAATYRHVLQLAGEQPQQIISEAHLGLARIHYQW 585 Query: 619 NEWDTALMHVQQSILLAGQFEDS-DREXXXXXXXXXXXXXXXXXSEAAAILEQADDFARQ 677 N+ T H QQS+ LA Q+E DR A +L+Q + ARQ Sbjct: 586 NDLATTEQHAQQSLHLARQYEQGIDRFIVGELMLAQLKLARNDHVGAQRLLDQTEQLARQ 645 Query: 678 RQYWTQIPHIAAVQVPVMLRQGNLEAAAILAEQHGLPLSLXXXXXXXXXXXXXXXXXXXX 737 + + + I ++ ++LRQ AA LA +H L + Sbjct: 646 QHFSARFGEIGYWRIQLLLRQAKFAAATQLATEHQLLIC--QAQIALAQAKSATAIALLE 703 Query: 738 XRQTAVKGRQDERLKGMILYAAALYKCGDNSGAAHTLAEAMRIAEPGGCIRSFVDEGPEA 797 Q + D+RL+ +L A A A L +A+ +AEP IRS +D G Sbjct: 704 PLQQLAQNWPDQRLQIELLLALAYAAQQQPEPALVALKQAIALAEPHQLIRSLLDHGSAI 763 Query: 798 ERLLRGSEIPGEMLDYRRKLLAAFAAETPETLEILTSSQTGASRHHIRPDQPLFEKLSRR 857 ++LL+ + G + L FA P ++P E+LS R Sbjct: 764 QQLLQLASDHGFNSPLIKHALIEFAKRQPS----------------VQPQTHTLERLSER 807 Query: 858 ELEILQLIAQGLSNREIGDRMFLALSTVKGYNRNIFDKLQVSRRTEAIARARMLGLL 914 ELE+LQ IA GL++REIG+R++L++ TVK + RNI+ KL+VS RT+A+ARAR LGLL Sbjct: 808 ELEVLQQIATGLTDREIGERLYLSMYTVKVHARNIYAKLEVSNRTQAVARARTLGLL 864 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.133 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 4,707,544,165 Number of extensions: 178070735 Number of successful extensions: 475683 Number of sequences better than 1.0e-05: 931 Number of HSP's gapped: 473685 Number of HSP's successfully gapped: 1124 Length of query: 914 Length of database: 3,060,696,203 Length adjustment: 145 Effective length of query: 769 Effective length of database: 1,694,649,028 Effective search space: 1303185102532 Effective search space used: 1303185102532 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 136 (57.0 bits)