BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0534.0011.p (472 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6TX83.1 A6TX83_ALKMQ Peptidase M56, BlaR1 238 1e-60 A6P0E1.1 A6P0E1_9BACE Putative uncharacterized protein 231 9e-59 A6P295.1 A6P295_9BACE Putative uncharacterized protein 224 2e-56 C4G3E4.1 C4G3E4_ABIDE Putative uncharacterized protein 213 4e-53 Q0AZT5.1 Q0AZT5_SYNWW Antirepressor regulating drug resistance p... 208 9e-52 >A6TX83.1 A6TX83_ALKMQ Peptidase M56, BlaR1 Length = 430 Score = 238 bits (606), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 127/308 (41%), Positives = 182/308 (59%), Gaps = 22/308 (7%) Query: 27 HKLPRLLFLILWGIVVARLLVPVSFPILPQLFPPAEIADPNISV-----NAHTAAVFQLP 81 ++LP+ F++LWGI ++RL++P S P L+ ++ N++ A VF Sbjct: 26 NRLPKTTFIVLWGIALSRLIIPFSIPSKFGLYNVINRLKEKFALEVGGTNSNDARVF--- 82 Query: 82 GPTALNNGMLTREVEVPADSGGGPKPEPMPEXXXXXXXXXXXXXXMAIVVIYYRSKRELR 141 N V P EPM + VV +YRS RE+R Sbjct: 83 ---IYGNTEYVEAVNKPW------YIEPM----MILWIAGIALLALFFVVSFYRSYREIR 129 Query: 142 TALPLQGSHPVIEAWLAKHPLRRTLTILTYDRMDTPITFGILHPKIILPKSLDTGNESAM 201 TALP++G++ +I+ WL++ R + IL D++ TP+T+GIL PKIILPKS+D NE + Sbjct: 130 TALPIKGNN-LIDKWLSEQKTNRLIRILVSDKVTTPLTYGILKPKIILPKSMDYSNELEV 188 Query: 202 DYILTHEYMHIRHFDAVWKLAAAAVLCLHWFNPLVWLMYLYLNRDLEMVCDARVIHKLGA 261 YIL HE +HI+ FDA+WKL LCLHWFNP+VW++Y+ +NRDLE+ CD VI G Sbjct: 189 RYILAHECIHIKRFDALWKLLLIIALCLHWFNPMVWVLYVLMNRDLEIACDEEVIKLFGE 248 Query: 262 EHKADYALCLLAVAEQKGGFTPLYSGFSKNATKERIVSIMKLKKLTVMTAAISLVLILGA 321 K+ YAL L+ +AE + TPLYS FSKNAT+ERIVSIMK KK +V++ ++ +L+ GA Sbjct: 249 STKSHYALSLIEMAEGRTKCTPLYSSFSKNATEERIVSIMKFKKTSVLSLMLTFILVAGA 308 Query: 322 VSAFADQS 329 F + + Sbjct: 309 TLVFGEST 316 >A6P0E1.1 A6P0E1_9BACE Putative uncharacterized protein Length = 432 Score = 231 bits (590), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 125/314 (39%), Positives = 184/314 (58%), Gaps = 28/314 (8%) Query: 27 HKLPRLLFLILWGIVVARLLVPVSFPILPQLFPPAEIADPNISVNAHTAAVFQLPGPTAL 86 H+LP+ FL LW I RLL+P S P+ P I +I ++ + V +LP Sbjct: 26 HRLPKTTFLALWMIAALRLLLPFSIPL------PFNI---HIGLDVFSDVVQELPSGNIA 76 Query: 87 NNGMLTREVEVPADSG-----GGPKPEPMPEXXXXXXXXXXXXXXMAIV---VIYYRSKR 138 + +P DS G P P E + + + Y+RS R Sbjct: 77 ST--------LPGDSPPSYDIGTAVPSPATEHISTFEILWLVGVLLLAIYFSISYFRSMR 128 Query: 139 ELRTALPLQGSHPVIEAWLAKHPLRRTLTILTYDRMDTPITFGILHPKIILPKSLDTGNE 198 + R ++P + P I+ WL H + R L + + D + +P+T+GILHP I+LPK LD ++ Sbjct: 129 KFRMSIP--DNTPYIQNWLTAHQISRPLAVRSSDLISSPLTYGILHPVILLPKKLDRNDQ 186 Query: 199 SAMDYILTHEYMHIRHFDAVWKLAAAAVLCLHWFNPLVWLMYLYLNRDLEMVCDARVIHK 258 +A+ Y+LTHEY+HIR FDA+ K+ AAVLC+HWFNPLVW+MY+ NRD+E+ CDA VI Sbjct: 187 AALKYVLTHEYVHIRRFDAITKILFAAVLCIHWFNPLVWVMYVLANRDMELSCDAWVIRM 246 Query: 259 LGAEHKADYALCLLAVAEQKGGFTPLYSGFSKNATKERIVSIMKLKKLTVMTAAISLVLI 318 LG ++++ YAL L+ + E++ G + L S KNA ERI +IMK KK +++ A +LVL+ Sbjct: 247 LGEKNRSSYALMLIKMEERRSGMSALCSHLGKNAISERIEAIMKFKKTSILACAFALVLV 306 Query: 319 LGAVSAFADQSSGA 332 +GA +AFA S+GA Sbjct: 307 VGATTAFA-TSTGA 319 >A6P295.1 A6P295_9BACE Putative uncharacterized protein Length = 484 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 125/321 (38%), Positives = 185/321 (57%), Gaps = 27/321 (8%) Query: 27 HKLPRLLFLILWGIVVARLLVPVSFPILPQLFPPAEIADPNISVNAHTAAVFQLPGPTAL 86 H+LP+ FL LW I RLL+P S P+ P I +I ++ + V +LP Sbjct: 26 HRLPKTTFLALWMIAALRLLLPFSIPL------PFNI---HIGLDVFSDVVQELPSGNIA 76 Query: 87 NNGMLTREVEVPADSG-----GGPKPEPMPEXXXXXXXXXXXXXXMAIV---VIYYRSKR 138 + +P DS G P P E + + + Y+RS R Sbjct: 77 ST--------LPGDSPPSYDIGTAVPSPATEHISTFEILWLVGVLLLAIYFSISYFRSMR 128 Query: 139 ELRTALPLQGSHPVIEAWLAKHPLRRTLTILTYDRMDTPITFGILHPKIILPKSLDTGNE 198 + R ++P + P I+ WL H + R L + + D + +P+T+GILHP I+LPK LD ++ Sbjct: 129 KFRMSIP--DNTPYIQNWLTAHQISRPLAVRSSDLISSPLTYGILHPVILLPKKLDRNDQ 186 Query: 199 SAMDYILTHEYMHIRHFDAVWKLAAAAVLCLHWFNPLVWLMYLYLNRDLEMVCDARVIHK 258 A+ Y+LTHEY+HIR FDA+ K+ AAVLC+HWFNP VW+MY+ NRD+E+ CDA VI Sbjct: 187 VALKYVLTHEYVHIRRFDAITKILFAAVLCIHWFNPFVWVMYVLANRDMELSCDAWVIRM 246 Query: 259 LGAEHKADYALCLLAVAEQKGGFTPLYSGFSKNATKERIVSIMKLKKLTVMTAAISLVLI 318 +GA++++ YAL L+ + E++ G + LYS F KNA ERI +IMK KK +++ ++L LI Sbjct: 247 MGAKNRSSYALMLIKMEEKRSGMSALYSHFGKNAISERIEAIMKFKKTSILACTLALALI 306 Query: 319 LGAVSAFADQSSGAESSANTE 339 GA +AFA +S A + + E Sbjct: 307 AGATTAFAATNSDATADTSKE 327 >C4G3E4.1 C4G3E4_ABIDE Putative uncharacterized protein Length = 750 Score = 213 bits (541), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 107/319 (33%), Positives = 167/319 (52%), Gaps = 11/319 (3%) Query: 27 HKLPRLLFLILWGIVVARLLVPVSFPI-------LPQLFPPAE--IADPNISVNAHTAAV 77 HKLP+ F ILW +V+ RLL+P S P P + E IAD N S V Sbjct: 26 HKLPKKTFTILWTLVLIRLLLPFSIPSSFSIYSWFPSINSARESYIADNNTSERVKNLTV 85 Query: 78 FQLPGPTALNNGMLTREVEVPADSGGGPKPEPMPEXXXXXXXXXXXXXXMAIVVIYYRSK 137 + T + + + + + + + +Y R+ Sbjct: 86 SKNIKETVIKESNTNKSHNYIKYNRAEDFEKTIFPSNEAIRFAGMIIGIIIFLFLYIRNM 145 Query: 138 RELRTALPLQGSHPVIEAWLAKHPLRRTLTILTYDRMDTPITFGILHPKIILPKSLDTGN 197 RE RT+LP+ + I+ WL K L+R +++ DR+ TP+++GI P I+LPK+LD + Sbjct: 146 REFRTSLPINNAF--IKDWLVKRKLKRKISVRYSDRISTPLSYGIFRPVILLPKNLDLRD 203 Query: 198 ESAMDYILTHEYMHIRHFDAVWKLAAAAVLCLHWFNPLVWLMYLYLNRDLEMVCDARVIH 257 + YILTHEY+HI+ FD + K+ A LC+HWFNP VW+M++ NRD+E+ CD V+ Sbjct: 204 TGLLSYILTHEYVHIKRFDIITKMFLIAALCVHWFNPAVWVMFMLFNRDIELSCDEAVVR 263 Query: 258 KLGAEHKADYALCLLAVAEQKGGFTPLYSGFSKNATKERIVSIMKLKKLTVMTAAISLVL 317 G + K YA L+ + +KG PL S FS NA KERI+S+MK+KK+++ +++ Sbjct: 264 IFGEKSKEAYAYALIDMEAKKGKLMPLCSNFSNNAVKERIISVMKIKKISLFMILFAIIF 323 Query: 318 ILGAVSAFADQSSGAESSA 336 + G + F + E+ + Sbjct: 324 VTGTTAVFMTSAKEKENES 342 >Q0AZT5.1 Q0AZT5_SYNWW Antirepressor regulating drug resistance predicted signal transduction N-terminal membrane component-like protein Length = 442 Score = 208 bits (530), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 95/214 (44%), Positives = 143/214 (66%), Gaps = 3/214 (1%) Query: 133 YYRSKRELRTALPLQGSHPVIEAWLAKHPLRRTLTILTYDRMDTPITFGILHPKIILPKS 192 Y + +RE +TALP++ I W +H LRRT+ I DR+ P+T+G+ HP ++LPK+ Sbjct: 55 YIKCRREFQTALPVEND--FINRWQQRHSLRRTVQIRQSDRIKAPLTYGVWHPVVLLPKA 112 Query: 193 LDTGNESAMDYILTHEYMHIRHFDAVWKLAAAAVLCLHWFNPLVWLMYLYLNRDLEMVCD 252 +D +E+ M YILTHEY+HIR FDA+ KL + +C+HWFNPLVW MY+ NRD+E+ CD Sbjct: 113 IDWTDETTMQYILTHEYVHIRRFDALAKLLITSAVCIHWFNPLVWAMYMLANRDIELTCD 172 Query: 253 ARVIHKLGAEHKADYALCLLAVAEQKGGFTPLYSGFSKNATKERIVSIMKLKKLTVMTAA 312 V+ G K+ YAL L+ + E+K PL++ FSKNA +ERI++IMK+KK ++ Sbjct: 173 ESVVRAFGDTAKSTYALALIGLEEKKSRLIPLFNNFSKNAIEERIIAIMKIKKYSLPVII 232 Query: 313 ISLVLILGAVSAFA-DQSSGAESSANTENSVEMN 345 ++++LI G FA +++ ++S TE S E+N Sbjct: 233 VAVLLIAGVTVGFACSKATVGQNSYLTEKSEELN 266 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.138 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,691,254,658 Number of extensions: 112800366 Number of successful extensions: 318167 Number of sequences better than 1.0e-05: 337 Number of HSP's gapped: 318095 Number of HSP's successfully gapped: 337 Length of query: 472 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 333 Effective length of database: 1,751,175,118 Effective search space: 583141314294 Effective search space used: 583141314294 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)