BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0534.0010.p
         (119 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q188Z2.1 Q188Z2_CLOD6 Putative penicillin-binding protein repressor   160   3e-38
A6TX84.1 A6TX84_ALKMQ Transcriptional repressor, CopY family          155   9e-37
Q0AZT7.1 Q0AZT7_SYNWW Transcriptional repressor, CopY family          152   1e-35
C5EEJ6.1 C5EEJ6_9FIRM Transcriptional repressor                       147   4e-34
B9Y4K0.1 B9Y4K0_9FIRM Putative uncharacterized protein                137   3e-31

>Q188Z2.1 Q188Z2_CLOD6 Putative penicillin-binding protein repressor
          Length = 119

 Score =  160 bits (406), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 76/118 (64%), Positives = 94/118 (79%)

Query: 1   MELKLYDSELKVMDILWREGMLAAGDLAAILNRETGWNRNTTYTVIKKLIVKGAIQRTDP 60
           ME+KL+DSELKVM++LW  G   AG+L  IL  ETGWNRNTTYTVIKKL+ KGAI+R +P
Sbjct: 1   MEIKLFDSELKVMEVLWERGESKAGELVKILKEETGWNRNTTYTVIKKLVSKGAIERIEP 60

Query: 61  GFVCTALIPKEQVQTYETKELINKMYNGSAGMFFSAFLNEKNLSKEDIDKLKKIVESL 118
            FVC ALI KE+VQ  ET+ LINKM+ GS+  F SAF+N++NLS ++I KLK+IVE L
Sbjct: 61  NFVCKALISKEEVQKQETETLINKMFGGSSEKFLSAFINKENLSSDEITKLKQIVEKL 118


>A6TX84.1 A6TX84_ALKMQ Transcriptional repressor, CopY family
          Length = 119

 Score =  155 bits (393), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 80/118 (67%), Positives = 98/118 (83%)

Query: 1   MELKLYDSELKVMDILWREGMLAAGDLAAILNRETGWNRNTTYTVIKKLIVKGAIQRTDP 60
           M++KL+DSELKVM++LWREG L AG LA IL  ETGWNRNTTYTVIKK I K AI+R +P
Sbjct: 1   MKIKLFDSELKVMEVLWREGNLTAGQLALILKEETGWNRNTTYTVIKKCIDKDAIERLEP 60

Query: 61  GFVCTALIPKEQVQTYETKELINKMYNGSAGMFFSAFLNEKNLSKEDIDKLKKIVESL 118
            F+C AL+ KE++Q  ET+ELINKM++GS  MFF+ F+NEKNL+KE IDKLKKIV+ L
Sbjct: 61  NFICRALLSKEEIQEQETEELINKMFDGSTEMFFATFVNEKNLTKEQIDKLKKIVDKL 118


>Q0AZT7.1 Q0AZT7_SYNWW Transcriptional repressor, CopY family
          Length = 119

 Score =  152 bits (383), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 68/118 (57%), Positives = 96/118 (81%)

Query: 1   MELKLYDSELKVMDILWREGMLAAGDLAAILNRETGWNRNTTYTVIKKLIVKGAIQRTDP 60
           ME+KL+DSEL++MD+LWREG   A  ++ ILN++ GWN NTTYT+IK+ I KGAI+R++P
Sbjct: 1   MEIKLFDSELRIMDVLWREGDTTAKKISDILNKQVGWNVNTTYTLIKRCIAKGAIKRSEP 60

Query: 61  GFVCTALIPKEQVQTYETKELINKMYNGSAGMFFSAFLNEKNLSKEDIDKLKKIVESL 118
            F+C ALI KE+VQ  ET ELINK+++GSA + F++ L+ KNLS E+I++LK+IV +L
Sbjct: 61  NFMCHALIAKEKVQEQETTELINKVFDGSADLLFASLLSRKNLSPEEIERLKQIVNNL 118


>C5EEJ6.1 C5EEJ6_9FIRM Transcriptional repressor
          Length = 123

 Score =  147 bits (370), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 64/115 (55%), Positives = 94/115 (81%)

Query: 1   MELKLYDSELKVMDILWREGMLAAGDLAAILNRETGWNRNTTYTVIKKLIVKGAIQRTDP 60
           M+LKL+DSELKVM++LW  G   AG LA +L  ETGWNRNTTYTVIKK I KGAI+R +P
Sbjct: 1   MKLKLFDSELKVMEMLWNHGDCTAGQLAKLLKEETGWNRNTTYTVIKKCIEKGAIERCEP 60

Query: 61  GFVCTALIPKEQVQTYETKELINKMYNGSAGMFFSAFLNEKNLSKEDIDKLKKIV 115
            F+C A++ +E++Q  ET+ELI++M++GS   FF+AFL+ ++LSKE++++L++++
Sbjct: 61  NFLCRAVVRREEIQAAETEELIDRMFDGSKSKFFAAFLSGQSLSKEELEELRQML 115


>B9Y4K0.1 B9Y4K0_9FIRM Putative uncharacterized protein
          Length = 117

 Score =  137 bits (345), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 64/116 (55%), Positives = 86/116 (74%)

Query: 3   LKLYDSELKVMDILWREGMLAAGDLAAILNRETGWNRNTTYTVIKKLIVKGAIQRTDPGF 62
           +KL+DSELK+MD+LWR+G   A ++A  L +  GWN+NTTYTVIKK + KGA+ RT+P F
Sbjct: 1   MKLFDSELKIMDVLWRKGKTPAKEIADELGQSIGWNKNTTYTVIKKCVDKGAVLRTEPNF 60

Query: 63  VCTALIPKEQVQTYETKELINKMYNGSAGMFFSAFLNEKNLSKEDIDKLKKIVESL 118
            C AL+ +E+VQ  ET ELINKM+ GS  +FFS+FL  K LS E  D+L K++E +
Sbjct: 61  QCEALVRREEVQKEETAELINKMFGGSDELFFSSFLKNKGLSDEKADELLKLIEKM 116


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.133    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 666,843,497
Number of extensions: 24328332
Number of successful extensions: 71027
Number of sequences better than 1.0e-05: 277
Number of HSP's gapped: 71057
Number of HSP's successfully gapped: 277
Length of query: 119
Length of database: 3,060,696,203
Length adjustment: 85
Effective length of query: 34
Effective length of database: 2,259,909,928
Effective search space: 76836937552
Effective search space used: 76836937552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)