BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0534.0002.p (256 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C4ZDG1.1 C4ZDG1_9FIRM Two-component response regulator 124 9e-27 A7VDK0.1 A7VDK0_9CLOT Putative uncharacterized protein 117 1e-24 B6FWL1.1 B6FWL1_9CLOT Putative uncharacterized protein 112 3e-23 B6G1Y8.1 B6G1Y8_9CLOT Putative uncharacterized protein 110 9e-23 B1IDU0.1 B1IDU0_CLOBK DNA-binding response regulator, LytTr family 110 1e-22 >C4ZDG1.1 C4ZDG1_9FIRM Two-component response regulator Length = 241 Score = 124 bits (310), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 78/248 (31%), Positives = 135/248 (54%), Gaps = 12/248 (4%) Query: 8 FHVGVCDDEAGVRNELQRYFSQLSVATNYSFDVHYFPSGEKLLQHYKAMQGEYAYHLLIL 67 ++ +CDD+ +++ Q ++ T+ + V + S +L YK + Y +++L Sbjct: 3 LNIAICDDDTNDIAIMKKNILQYTIETDNNIVVSSYFSASDILSDYK----NHLYQIVLL 58 Query: 68 DVEMTGISGLETARQIRSLPDRDVQIIFLTSYPEYMMESFDVQTFQYLLKPVTYELFKKK 127 D+EM I+G+E ARQ+R + D D+ IIF TSYPEYM ESF+VQ FQ++ KPV Y K Sbjct: 59 DIEMPDINGMELARQLRDMDD-DLLIIFTTSYPEYMHESFEVQPFQFITKPVDYTAIYKL 117 Query: 128 TLKLCSYLISSSNRFFTIKVEDGQIVLRKPEIIAMVKIKHSLAQNK--LKVITAAQEYII 185 + L +S I + + + +++ + S+ +NK L+ + I Sbjct: 118 FNNIIKKLYRNSKSIVIIDTDGEKNFVPLSDLLYI----SSMKENKLHLRYQLTDRALIS 173 Query: 186 NGTLQEYSDKLGSL-FLMIHRSIIVNLEHVRRFTATSVVMSNDEEYPIGRSQSKTIKDVY 244 GTL E +L S F+ R +VNL +R T+T ++++N E PI R +SK ++++Y Sbjct: 174 KGTLSEAEKRLSSHGFVSPSRGFLVNLHQIRSITSTRLLLNNGFELPISRRRSKELQNIY 233 Query: 245 AQYVLEEL 252 +Q+++ L Sbjct: 234 SQHIINIL 241 >A7VDK0.1 A7VDK0_9CLOT Putative uncharacterized protein Length = 243 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 81/259 (31%), Positives = 130/259 (50%), Gaps = 33/259 (12%) Query: 8 FHVGVCDDEAGVRNELQRYFSQLSVATNYSFDVHYFPSGEKLLQHYKAMQGEYAYHLLIL 67 F +G+CDD L + ++ N F++ F SGE LLQ Q ++ + +L+L Sbjct: 3 FRLGICDDTQLDIACLTEHIKHYMISYNIQFEIESFQSGEALLQ----AQRKHPFQILLL 58 Query: 68 DVEMTGISGLETARQIRSLPDRDVQIIFLTSYPEYMMESFDVQTFQYLLKPVTYELFKKK 127 D+EM GI+G+ AR +R + I+F+TSYPEYM ESF+VQ FQ+L KPV+Y + Sbjct: 59 DIEMPGINGMTIARYLRDELYDESFIVFVTSYPEYMQESFEVQPFQFLTKPVSY----VR 114 Query: 128 TLKLCSYLISSSNRFFTIKVEDGQIVLRKPEIIAMVKIKHSLAQNKLKVITAAQ------ 181 KL S +I K+ +I +H + N L I A + Sbjct: 115 IEKLLSDIIRRYQHSHITKI-----------VIDTNGEEHLIPVNNLLYIQAVKGEKRYL 163 Query: 182 EYIIN-------GTLQEYSDKLGS-LFLMIHRSIIVNLEHVRRFTATSVVMSNDEEYPIG 233 EY + GT+QE+ ++L + F +R ++N+ H++ T V+M N E+ PI Sbjct: 164 EYHLTDAILYGEGTIQEWENRLATHSFYSTYRGYLINIGHIQIIQQTHVLMDNGEQLPIS 223 Query: 234 RSQSKTIKDVYAQYVLEEL 252 R + ++ +YA ++ L Sbjct: 224 RRKISPLQQLYADRIIHVL 242 >B6FWL1.1 B6FWL1_9CLOT Putative uncharacterized protein Length = 238 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 71/248 (28%), Positives = 132/248 (53%), Gaps = 12/248 (4%) Query: 7 LFHVGVCDDEAGVRNELQRYFSQLSVATNYSFDVHYFPSGEKLLQHYKAMQGEYAYHLLI 66 + +G+CDDE VR +++ + + + V F +GE ++++ ++ + +L Sbjct: 1 MITIGICDDELDVRMDIKNAILNTMIDKDIEYQVKEFSNGEDVIKY---IELDNEIDILF 57 Query: 67 LDVEMTGISGLETARQIRSLPDRDVQIIFLTSYPEYMMESFDVQTFQYLLKPVTYELFKK 126 LD++M G+ G+ETAR++R DR +IIF+TS E + E+F+V+ F+++ KP+ +E+ + Sbjct: 58 LDIQMDGLDGMETARKLREY-DRTTEIIFVTSIGEKISEAFEVRAFRFIKKPIQHEVI-E 115 Query: 127 KTLKLCSYLISSS-NRFFTIKVEDGQIVLRKPEIIAMVKIKHSLAQNKLKVITAAQEYII 185 K LK C ++ F IK ++G + ++I + I K+K+ T E Sbjct: 116 KNLKECVVEVAKKRGCFLKIKTDNGFKKVYSRDLIYIEAI-----NKKIKLCTKEGELEC 170 Query: 186 NGTLQE-YSDKLGSLFLMIHRSIIVNLEHVRRFTATSVVMSNDEEYPIGRSQSKTIKDVY 244 G L + S+ LF+ HRS IVN+ ++ ++M N PI R++ K + D Y Sbjct: 171 RGNLNDIVSNFEKQLFIQCHRSYIVNMIYIEEIYNRDIIMENGARIPISRNKYKKVVDKY 230 Query: 245 AQYVLEEL 252 + E++ Sbjct: 231 FWSIGEDI 238 >B6G1Y8.1 B6G1Y8_9CLOT Putative uncharacterized protein Length = 234 Score = 110 bits (276), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 135/246 (54%), Gaps = 21/246 (8%) Query: 7 LFHVGVCDDEAGVRNELQRYFSQLSVATNYSFDVHYFPSGEKLLQHYKAMQGEYAYHLLI 66 + ++ +C+DE +EL++ + + N + + F SGE+LL YK ++ Sbjct: 1 MLNISICEDEKIQADELEKMIKEKLNSINIDYSIQKFSSGEELLSDYKDTD------IIF 54 Query: 67 LDVEMTGISGLETARQIRSLPDRDVQIIFLTSYPEYMMESFDVQTFQYLLKPVTYELFKK 126 LD++M+ +SG++TAR+IR + D++V+IIF T+ EY+ E+++V+ F+YLLKP+ +L Sbjct: 55 LDIKMSKLSGMDTARKIREI-DKNVEIIFTTALQEYVFEAYEVRAFRYLLKPIDNDLL-F 112 Query: 127 KTLKLCSYLISSSNRFFTIKVEDGQIVLRKPEIIAMVKIKHSLAQNKLKVITAAQEYIIN 186 L+LC ++S ++ +K + IVL +I+ + I+ + + T +++Y I Sbjct: 113 NYLELCIKELNSRSKKICLKNKSDMIVLNTDDILYVEVIRKEIT-----IYTESEKYSIK 167 Query: 187 GTLQEYSDKL-GSLFLMIHRSIIVNLE---HVRRFTATSVVMSNDEEYPIGRSQSKTIKD 242 +L+ D L G F H S +VNL+ H+ + AT D + PI R + K K Sbjct: 168 MSLKSLEDMLNGKNFFKCHNSYLVNLDKISHIDQHFAT----IKDFKIPISRPKYKEFKI 223 Query: 243 VYAQYV 248 A ++ Sbjct: 224 ALASHL 229 >B1IDU0.1 B1IDU0_CLOBK DNA-binding response regulator, LytTr family Length = 233 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 123/230 (53%), Gaps = 16/230 (6%) Query: 10 VGVCDDEAGVRNELQRYFSQLSVATNYSFDVHYFPSGEKLLQHYKAMQGEYAYHLLILDV 69 +G+C ++ RN L+ + ++ T ++ F GE+LLQ+YK M +++ LD+ Sbjct: 3 IGICGNDVEQRNYLKDHLIKIIKETKLECELLEFDCGEELLQNYKKM------NIIFLDI 56 Query: 70 EMTGISGLETARQIRSLPDRDVQIIFLTSYPEYMMESFDVQTFQYLLKPVTYELFKKKTL 129 M I+G+E A++IR D V+IIF+T Y+ ++++V+ ++YLL+P+ YE+ K TL Sbjct: 57 NMGKINGIEIAKKIREF-DSVVEIIFVTKLVNYIHQAYEVRAYRYLLRPINYEIIKYVTL 115 Query: 130 KLCSYLISSSNRFFTIKVEDGQIVLRKPEIIAMVKIKHSLAQNKLKVITAAQEYIINGTL 189 + + N IK + I+L EI + + Q L + T +EYI TL Sbjct: 116 NCIKSIEAQKN--LVIKYKGEIIILNIDEITYI-----EVMQKMLTIHTKEKEYIFKMTL 168 Query: 190 QEYSDKLGSL-FLMIHRSIIVNLEHVRRFTATSVVMSNDEEYPIGRSQSK 238 ++ KL F H+S +VNL V+ F +++ ND PI + +SK Sbjct: 169 SKFEKKLSQHDFFRCHKSFLVNLNKVKEF-KDNIINVNDTYIPISKYRSK 217 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.137 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,381,298,890 Number of extensions: 51749206 Number of successful extensions: 149199 Number of sequences better than 1.0e-05: 1058 Number of HSP's gapped: 148896 Number of HSP's successfully gapped: 1058 Length of query: 256 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 123 Effective length of database: 1,807,701,208 Effective search space: 222347248584 Effective search space used: 222347248584 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)