BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0533.0017.p (315 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q892X5.1 Q892X5_CLOTE Membrane associated protein 149 4e-34 Q892X6.1 Q892X6_CLOTE Membrane associated protein 139 3e-31 A0AH44.1 A0AH44_LISW6 Complete genome 125 6e-27 C2KZB6.1 C2KZB6_9FIRM Putative uncharacterized protein 118 8e-25 C1XBH4.1 C1XBH4_9FUSO Putative uncharacterized protein 97 2e-18 >Q892X5.1 Q892X5_CLOTE Membrane associated protein Length = 331 Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 96/315 (30%), Positives = 172/315 (54%), Gaps = 5/315 (1%) Query: 2 LSACSAITSTVDQAPAGVTSGERKEIDKYNAYVGLNNLMTGRINEVLVHYFEKFGVDTQP 61 ++ C +TS A +++I+KYN Y+ L+N MTG +++ L Y EKFG+ + Sbjct: 13 MAMCLLLTS-CGSAGKSKAVNSKEDIEKYNNYIALSNYMTGLMDDALGIYVEKFGIGDEI 71 Query: 62 VIEKNFS-FIMLDVAETEREVVDKANGYTASQPAFADADPLVIKLTPVIKDLLSVLDDMK 120 VI++ F+ F + + ET ++ +DK Y + +P++ + D + L P +K+L++ L +++ Sbjct: 72 VIKEGFNGFNGVPILETHKDQLDKVLEYASKKPSYGETDDAMKALHPKMKELMNTLGEIE 131 Query: 121 AYYDTRGYVDDDFAKGKQLHTKVVSANIAYETVANQYFTALQKLGNEQRLAELQKLKDAD 180 YY+ + +VDD F KGK+LH KV S Y +A ++F + + +++ +L KLK+ D Sbjct: 132 NYYNAKSFVDDKFNKGKELHKKVCSQYKEYSDLAVKFFISFDNITEQKKKEDLDKLKEND 191 Query: 181 QQIRYNALKFMIDAEATAIEMDEQGITAGNVLQLDMTKFKAKYDIMTADLSALMTILKDK 240 IRY A+ + A+ + IT N+L D K+K KYD++T D++ + KD Sbjct: 192 MMIRYYAMSILNRAQDIEMSFYRAKITDDNILDYDANKYKEKYDLLTEDINKFIEYSKDN 251 Query: 241 ERIQKEGINSFSIESYVHSATEAKAAASKIIERINKKEPVSDSDLNGQFLNTTDGTP-EN 299 +R +KE I + ++ AK AA+ I+E + K +++ G+ P Sbjct: 252 KRAKKEQIA--ILPTFSSDIKRAKVAATDIMEILKTKNTNINANTKGRITKAGKTAPLYE 309 Query: 300 FNYLLSKAVERYNEM 314 F+ ++S V+ YN M Sbjct: 310 FSRIVSNMVDSYNNM 324 >Q892X6.1 Q892X6_CLOTE Membrane associated protein Length = 313 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 90/290 (31%), Positives = 153/290 (52%), Gaps = 14/290 (4%) Query: 28 DKYNAYVGLNNLMTGRINEVLVHYFEKFGVDTQPVIEKN---FSFIMLDVAETEREVVDK 84 +KY AY L+ +TG++ E L +YF KFG + KN ++ I+L+ + E E K Sbjct: 34 EKYEAYATLDTFITGKLQESLDYYFVKFGYTEEFEANKNDYLYNGILLEFNKNELE---K 90 Query: 85 ANGYTASQPAFADADPLVIKLTPVIKDLLSVLDDMKAYYDTRGYVDDDFAKGKQLHTKVV 144 Y +++P F D + L K+L+ L D YY + YVDDDF KGK+LH K+ Sbjct: 91 VFSYYSAKPNFDKVDNSLKNLHAEFKELIQSLSDADTYYKLKSYVDDDFVKGKELHKKIC 150 Query: 145 SANIAYETVANQYFTALQKLGNEQRLAELQKLKDADQQIRYNALKFMIDAEATAIEMDEQ 204 S + + + T E +L++ K D I+Y AL ++ A+ IE+ Q Sbjct: 151 SQYTKVKPLKKDFSTHFGDFFIEDSKEKLEEFKKNDFMIKYYALSSLLKAKDLEIELQRQ 210 Query: 205 GITAGNVLQLDMTKFKAKYDIMTADLSALMTILKDKERIQKEGINSFSIESYVHSATEAK 264 + GN+ LD+ KFK KY+++ AD++ + KD RI+KE I+ +++ ++ + K Sbjct: 211 KVAKGNMESLDIRKFKEKYNLLVADMNKFLEYSKDSNRIKKENID----QAFPYAIMDVK 266 Query: 265 AAASKIIERINKKEPVSDSDLNGQFLNTTDGTPENFNYLLSKAVERYNEM 314 ++A+ I+ ++ K DS N + +GT E F+ + +A+ +Y +M Sbjct: 267 SSATDILTKVEGK----DSYRNFGYSKNQEGTTEYFSNKIKEAILQYVKM 312 >A0AH44.1 A0AH44_LISW6 Complete genome Length = 344 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 96/326 (29%), Positives = 162/326 (49%), Gaps = 22/326 (6%) Query: 1 MLSAC-SAITSTVDQAPA-----------GVTSGERKEIDKYNAYVGLNNLMTGRINEVL 48 +LSAC S ++ D+A A G SG K+++KYNAYV L+N + + L Sbjct: 20 LLSACGSDDKASADKASADKEETTKEQKSGAYSG--KKLEKYNAYVELSNAINSEYSAAL 77 Query: 49 VHYFEKFGVDTQPVIEKNFSFIMLD--VAETEREVVDKANGYTASQPAFADADPLVIKLT 106 +YF+ + D +K+ + V++TE + + S + D KL Sbjct: 78 ANYFQNYS-DENGKFKKSSNDSYSLSSVSQTENAITAVNDNMKNSSLS---VDSEAKKLV 133 Query: 107 PVIKDLLSVLDDMKAYYDTRGYVDDDFAKGKQLHTKVVSANIAYETVANQYFTALQKLGN 166 +++ + +++ YY ++GYVDDDF KG+ LH +++ ++ + + K+ + Sbjct: 134 KDLENDTKIFKELETYYASKGYVDDDFKKGETLHNELLKSSETTNKDIKAFNEKMDKIID 193 Query: 167 EQRLAELQKLKDADQQIRYNALKFMIDAEATAIEMDEQGITAGNVLQLDMTKFKAKYDIM 226 Q+ A +++KDA + Y F+ E ++ QGI + NVL D+ ++A+Y+ Sbjct: 194 SQQEAAAKEMKDAGEITVYTVNDFITKTEKLITNLESQGINSTNVLDTDLASYEAEYNTF 253 Query: 227 TADLSALMTILKDKERIQKEGINSFSIESYVHSATEAKAAASKIIERINKKEPVSDSDLN 286 T AL+ KD+++++KE I+ I + ATE KA AS ++ RI KE V S L Sbjct: 254 TKSYEALVKASKDEKQLKKEDISEDGISGMLTKATETKADASNLLNRIKNKEAVPQSSL- 312 Query: 287 GQFLNTTDGTPENFNYLLSKAVERYN 312 F TDGTPE + V +YN Sbjct: 313 -AFAENTDGTPEKLMASYNDLVSQYN 337 >C2KZB6.1 C2KZB6_9FIRM Putative uncharacterized protein Length = 397 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 90/301 (29%), Positives = 156/301 (51%), Gaps = 17/301 (5%) Query: 21 SGERK-EIDKYNAYVGLNNLMTGRINEVLVHYFEKFGVDTQ-PVIEKNF----SFIMLDV 74 SGE E+ +YN YV +N +TG + + YFE +T+ VIE SF D+ Sbjct: 101 SGESDDELTQYNNYVDFSNFLTGNFEDNIGRYFEGVEPETEFKVIEGGHYTTVSFSDYDM 160 Query: 75 AETEREVVDKANGYTASQPAFADADPLVIKLTPVIKDLLSVLDDMKAYYDTRGYVDDDFA 134 E + +D+AN T F D D V L P++ + + V ++ +Y D + Y DD +A Sbjct: 161 -EQVQSYLDQANAGTN----FPDLDEQVKTLAPIVLETMKVYNEAASYGDLQAYKDDQYA 215 Query: 135 KGKQLHTKVVSANIAYETVANQYFTALQKLGNEQRLAELQKLKDADQQIRYNALKFMIDA 194 K +++H+++ +Y A+ Y A+ L E++ E+Q++KD IRY+ L+ M D Sbjct: 216 KAQEIHSRLFPLVQSYIDPADTYTAAIHSLSVERQQEEMQRMKDNGLTIRYDMLRIM-DL 274 Query: 195 EATAIEM--DEQGITAGNVLQLDMTKFKAKYDIMTADLSALMTILKDKERIQKEGI-NSF 251 + I+ ++ + N+ LD+TK + YD + L + + KDK+ +KEG N++ Sbjct: 275 KNQIIDAFSEQPNVAEANIADLDLTKIRPAYDELATLLLEFVPLSKDKDAAEKEGFDNNY 334 Query: 252 SIESYVHSATEAKAAASKIIERINKKEPVSDSDLNGQFLNTTDGTPENFNYLLSKAVERY 311 + ++ +A + K ++I+R + S++DL Q L TDG+ + + SK E Y Sbjct: 335 YVTTFADAAGDFKKQLQEMIDRKESGKGFSENDL--QILWATDGSFQKISEAASKMTETY 392 Query: 312 N 312 N Sbjct: 393 N 393 >C1XBH4.1 C1XBH4_9FUSO Putative uncharacterized protein Length = 336 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 86/331 (25%), Positives = 162/331 (48%), Gaps = 30/331 (9%) Query: 1 MLSACSAITSTVDQAPAG--VTSGE---RKEIDKYNAYVGLNNLMTGRINEVLVHYFEKF 55 ++ A ++ + D+ AG VT + K +KYN ++ N + I++ L++YFE Sbjct: 12 LIIALLSLKTGKDEKNAGNKVTKEQIVLEKNKEKYNKHIRFYNRILN-IDKGLLYYFEDA 70 Query: 56 GVDTQPVIEKNFSFIM-----LDVAETEREVVDKANGYTASQPAFADADPLVIKLTPVIK 110 G +EK F I D+A +R +DK ++ ++ D I + P+++ Sbjct: 71 G------MEKKFKVIQDEDIKADIA-IDRNFIDKLKELEQNEDKKSELDKKAITMIPILE 123 Query: 111 DLLSVLDDMKAYYDTRGYVDDDFAKGKQLHTKVVSANIAYETVANQYFTALQKLGNEQRL 170 +L + D+M+ YY + Y+ D +AK + LHT++++ Y V Y +K + Sbjct: 124 KMLPIADEMRTYYKNKEYLKDKYAKAQTLHTELLAILDKYNQVTKAYKDLFEKKSD---- 179 Query: 171 AELQKL--KDADQQ---IRYNALKFMIDAEATAIEMDEQGITAGN-VLQLDMTKFKAKYD 224 E++KL KD D++ I YN F+ + E+ +QG+ A + + + KFK + Sbjct: 180 -EIKKLMIKDYDKRREFITYNQFMFIEEGNNIIKEIHKQGLDASDFTTKGNPKKFKKIEE 238 Query: 225 IMTADLSALMTILKDKERIQKEGINSFSIESYVHSATEAKAAASKIIERINKKEPVSDSD 284 M L LK++++++KEG ++ A + K + + I++I KKE S S Sbjct: 239 KMIKALVKFEKSLKNEKQLKKEGYTVGEHNDFIQKANKFKQSVNVFIQKIEKKEKASHSS 298 Query: 285 LNGQFL-NTTDGTPENFNYLLSKAVERYNEM 314 + F T +GTPEN ++ ++ +N++ Sbjct: 299 ASDSFFAQTEEGTPENILSNFNEVIKEHNKL 329 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.130 0.350 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,696,222,830 Number of extensions: 66756236 Number of successful extensions: 163459 Number of sequences better than 1.0e-05: 84 Number of HSP's gapped: 163441 Number of HSP's successfully gapped: 84 Length of query: 315 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 180 Effective length of database: 1,788,859,178 Effective search space: 321994652040 Effective search space used: 321994652040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 131 (55.1 bits)