BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0533.0010.p (343 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DLJ0.1 B1DLJ0_9BACL ROK family protein 346 2e-93 A9U713.1 A9U713_PHYPA Predicted protein (Fragment) 321 8e-86 C4S931.1 C4S931_YERMO Putative uncharacterized protein 186 4e-45 C4RZR2.1 C4RZR2_YERBE Putative uncharacterized protein 179 3e-43 A1JSL4.1 A1JSL4_YERE8 Putative exported protein 179 3e-43 >B1DLJ0.1 B1DLJ0_9BACL ROK family protein Length = 342 Score = 346 bits (888), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 164/342 (47%), Positives = 239/342 (69%) Query: 1 MNPITNNTMRVKKMNKELVRQALKTMKQGTKSMLAQATGLSVATCGNILNELIDTGELLE 60 M+ T+NT++VKKMN ELV+ ALK TK+ +A T LSVATCG ILNEL+ GE++E Sbjct: 1 MSSHTHNTIQVKKMNVELVKNALKAQGIATKASIAGLTKLSVATCGTILNELLAIGEIIE 60 Query: 61 LDMEESSGGRPARLYRYNVNFSYIACIIIRAGVKTHSLTYTVANLAGEAIKEGYQETDRM 120 L+ + ++GGRPA+ YRYN NF + C+++R HS++Y++ NL GE I + + Sbjct: 61 LEPDGANGGRPAKQYRYNANFGCVICLLVRTEGGIHSISYSIVNLLGETISDTTLTLPHI 120 Query: 121 EPDMIEKLVDQLIGEFPQIRAVGIGVPGAVNQGIINVSDIKELINVPLEASIRDKHGVEV 180 + D+I++L++ LI + ++A+GIG+PG V++G+I V D+ +L P+ + DK+G+ + Sbjct: 121 DRDVIDRLIEDLISDNENVQAIGIGIPGVVHRGVIGVCDVPDLAGQPVGPYLEDKYGIPI 180 Query: 181 IMDNDMNLTVYGFYQKQGYDEEKSVAVVTFIEGCFPGAGMMVDGHILRGSTRFAGEIAFL 240 ++NDMN+TVYGFY Q ++E+K+ AV TF + FPGAG +VDG IL G+T F GE++FL Sbjct: 181 TIENDMNMTVYGFYHLQNFEEDKTFAVATFPKNHFPGAGFIVDGRILSGNTTFGGEVSFL 240 Query: 241 PFGMSHEEQFRQLHERTTFYSLAGRAVSSLIAIMNPETIALTGSLVEPADVELIRQECLK 300 PFG+S EEQ RQLH F LA ++S+IAI+NP TIA+TG L + ++ + + CLK Sbjct: 241 PFGVSREEQLRQLHTEDGFIRLAVMTLTSIIAIINPVTIAITGELPRESQLKDLHEGCLK 300 Query: 301 YIPEMHMPQLMLLENPHENYMYGLITMTLESLSYSLQLIEKR 342 IP+ HMPQL++ N YM GL+T TLESL+Y LQ+ EKR Sbjct: 301 DIPQEHMPQLIIQNNTQREYMTGLVTATLESLTYRLQVTEKR 342 >A9U713.1 A9U713_PHYPA Predicted protein (Fragment) Length = 590 Score = 321 bits (822), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 148/195 (75%), Positives = 171/195 (87%) Query: 148 GAVNQGIINVSDIKELINVPLEASIRDKHGVEVIMDNDMNLTVYGFYQKQGYDEEKSVAV 207 GAV +G+INVSDI ELI+ PLEA IRDKHG+EVI++NDMN TVYGFY+KQ YD EKS+AV Sbjct: 202 GAVYKGVINVSDIPELIHAPLEAIIRDKHGIEVILENDMNSTVYGFYRKQDYDTEKSIAV 261 Query: 208 VTFIEGCFPGAGMMVDGHILRGSTRFAGEIAFLPFGMSHEEQFRQLHERTTFYSLAGRAV 267 TF+EG PGAG++VDGHI RG+TRFAGEIAFLP+G+S EQ RQLH+R F+SLA AV Sbjct: 262 ATFLEGSLPGAGLIVDGHIHRGNTRFAGEIAFLPYGISQAEQLRQLHDREAFHSLAAHAV 321 Query: 268 SSLIAIMNPETIALTGSLVEPADVELIRQECLKYIPEMHMPQLMLLENPHENYMYGLITM 327 SSLIA+MNPETIALTGSLV+ D+ LIRQECLKYIPEMHMPQL LLE+P E+YMYGL TM Sbjct: 322 SSLIAVMNPETIALTGSLVQADDIRLIRQECLKYIPEMHMPQLALLEHPDEDYMYGLTTM 381 Query: 328 TLESLSYSLQLIEKR 342 TLESL+YSLQL+EKR Sbjct: 382 TLESLAYSLQLVEKR 396 >C4S931.1 C4S931_YERMO Putative uncharacterized protein Length = 341 Score = 186 bits (471), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 110/332 (33%), Positives = 179/332 (53%), Gaps = 7/332 (2%) Query: 3 PITNNTMRVKKMNKELVRQALKTMKQGTKSMLAQATGLSVATCGNILNELIDTGELLELD 62 PI N T ++K+ N LV LK++ TK ++ TGLS+ATCG ILNEL GE++E Sbjct: 5 PI-NTTRQMKQKNIMLVMSTLKSLISATKGDISNQTGLSLATCGTILNELCSKGEIIEES 63 Query: 63 MEESSGGRPARLYRYNVNFSYIACIIIRAGVKTHSLTYTVANLAGEAIKEGYQETDRMEP 122 ++ES GGRPA+ YRYN N+ + I + + ++ + + I E + Sbjct: 64 LDESRGGRPAKRYRYNSNYFSLLSIYVEGTNTSGVISSCLTSADNNTIDEHDEIYSNFTV 123 Query: 123 DMIEKLVDQLIGEFPQIRAVGIGVPGAVNQGIINVSDIKELINVPLEASIRDKHGVEVIM 182 D + + +L ++P I+A+G+GVPG V G + DI L + + + G+ V + Sbjct: 124 DALITHIQKLSDKYPNIKAIGLGVPGIVVSGNVLSCDISNLEGLAISELLSSHFGIFVQV 183 Query: 183 DNDMNLTVYGFYQKQGYDEEKSVAVVTFIEGCFPGAGMMVDGHILRGSTRFAGEIAFLPF 242 NDMN T +GFY+ + + VA + G G+++ G +LRG+++FAGE+A LPF Sbjct: 184 GNDMNYTAFGFYRNHCRNIDSPVAYIYMPPRHCAGCGIVISGEMLRGASQFAGEVAKLPF 243 Query: 243 GMSHEEQFRQLHERTTFYSLAGRAV---SSLIAIMNPETIALTGSLVEPADVELIRQECL 299 ++ +++ R+ + R + SSLIAI+NP TIA++G V +E + E L Sbjct: 244 ---YDHVVNKVNVRSQSTLVLERLIHITSSLIAIINPATIAISGEQVSQNCIEDLSGELL 300 Query: 300 KYIPEMHMPQLMLLENPHENYMYGLITMTLES 331 K H+P + +N +Y G+ TL++ Sbjct: 301 KRFDSKHIPHFVYRDNIKSDYHNGISEYTLDA 332 >C4RZR2.1 C4RZR2_YERBE Putative uncharacterized protein Length = 344 Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 105/326 (32%), Positives = 172/326 (52%) Query: 6 NNTMRVKKMNKELVRQALKTMKQGTKSMLAQATGLSVATCGNILNELIDTGELLELDMEE 65 N T ++K+ N LV LK++ TK ++ TGLS+ATCG ILNEL GE++E ++E Sbjct: 10 NTTRQMKQKNIMLVTSTLKSLVSATKGDISNHTGLSLATCGTILNELCSKGEIIEESLDE 69 Query: 66 SSGGRPARLYRYNVNFSYIACIIIRAGVKTHSLTYTVANLAGEAIKEGYQETDRMEPDMI 125 S GGRPA+ Y YN N+ + I I + ++ + + + I E + + D + Sbjct: 70 SRGGRPAKRYIYNSNYFSLLSIYIEGTNTSGVISSRLISADNKTIAEYDEIYSNLTVDAL 129 Query: 126 EKLVDQLIGEFPQIRAVGIGVPGAVNQGIINVSDIKELINVPLEASIRDKHGVEVIMDND 185 + + + IRAVG+G+PG V G + DI L + + + + G+ V + ND Sbjct: 130 ITHIQNVADKHSNIRAVGLGLPGIVVGGSVLSCDITNLEGLAITEQLSARFGIFVQVGND 189 Query: 186 MNLTVYGFYQKQGYDEEKSVAVVTFIEGCFPGAGMMVDGHILRGSTRFAGEIAFLPFGMS 245 MN T +GFY+ + + +A + G G+++ G +LRG+++FAGE++ LPF S Sbjct: 190 MNYTAFGFYRINCRNINEPIAYIYMPPRHCTGCGIVISGEMLRGASQFAGEVSKLPFYNS 249 Query: 246 HEEQFRQLHERTTFYSLAGRAVSSLIAIMNPETIALTGSLVEPADVELIRQECLKYIPEM 305 E ++ T SSLIAI+NP TIA++G L+ +E + E LK Sbjct: 250 AENSTNIKYQHTLVLDRLTHITSSLIAIINPATIAISGELISQNCIEDLSAELLKTFDSK 309 Query: 306 HMPQLMLLENPHENYMYGLITMTLES 331 H+P + ++ +Y G+ TL++ Sbjct: 310 HIPHFVYRDSIKSDYHNGISEYTLDA 335 >A1JSL4.1 A1JSL4_YERE8 Putative exported protein Length = 338 Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 108/338 (31%), Positives = 182/338 (53%), Gaps = 20/338 (5%) Query: 4 ITNNTMRVKKMNKELVRQALKTMKQGTKSMLAQATGLSVATCGNILNELIDTGELLELDM 63 + N T ++KK N LV LK++ TKS ++ TGLS+ATCG ILNEL GE++E + Sbjct: 2 LINTTRQMKKKNIMLVTGTLKSLVSATKSDISAQTGLSLATCGTILNELCAEGEVIEESL 61 Query: 64 EESSGGRPARLYRYNVNFSYIACIIIRAGVKTHSLTYTVANLAGEAIKEGYQETDRMEPD 123 +ES GGRPA+ Y YN N+ + + + ++ + + G+ +E + + + + Sbjct: 62 DESRGGRPAKRYIYNPNYFSVLSVYAEGTNDSGVISSYLTSADGKKTQEYNEIYNNLTVE 121 Query: 124 MIEKLVDQLIGEFPQIRAVGIGVPGAVNQGIINVSDIKELINVPLEASIRDKHGVEVIMD 183 ++ + ++I + P I+A+G+G+PG V G + DI L + + + ++ G+ V + Sbjct: 122 ILINHIKEIIDKHPNIKALGLGLPGVVVDGKVLTCDITHLEGLDIAEQLNNQLGIFVQVG 181 Query: 184 NDMNLTVYGFYQKQGYDEEKSVAVVTFIEGCFPGAGMMVDGHILRGSTRFAGEIAFLPF- 242 NDMN T +GFY+ VA + G GM++ G +LRG+++FAGE++ LPF Sbjct: 182 NDMNYTAFGFYRNDCRGTNDPVAYIFMPPRHCAGCGMVISGKMLRGASQFAGEVSKLPFY 241 Query: 243 -----GMS----HEEQFRQLHERTTFYSLAGRAVSSLIAIMNPETIALTGSLVEPADVEL 293 G S H +F +L T SSLI I+NP TIA++G+ ++ A ++ Sbjct: 242 DNLTNGTSTNSHHTPEFERLLHIT----------SSLIVIINPATIAISGNNIDQACIDA 291 Query: 294 IRQECLKYIPEMHMPQLMLLENPHENYMYGLITMTLES 331 + E LK H+PQ + + +Y G+ TL++ Sbjct: 292 LAIELLKNFDSKHIPQFVYRDCIKSDYHKGISEYTLDA 329 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,941,752,449 Number of extensions: 79644566 Number of successful extensions: 202230 Number of sequences better than 1.0e-05: 568 Number of HSP's gapped: 202356 Number of HSP's successfully gapped: 568 Length of query: 343 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 207 Effective length of database: 1,779,438,163 Effective search space: 368343699741 Effective search space used: 368343699741 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)