BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0533.0006.p (322 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KI90.1 B3KI90_9BACI Binding-protein-dependent transport system... 544 e-153 B1D6C6.1 B1D6C6_9BACL Binding-protein-dependent transport system... 450 e-125 A5LNL9.1 A5LNL9_STRPN ABC transporter, permease protein 377 e-102 Q97P46.1 Q97P46_STRPN ABC transporter, permease protein 375 e-102 C1CT38.1 C1CT38_STRZT Protein LplB 375 e-102 >B3KI90.1 B3KI90_9BACI Binding-protein-dependent transport systems inner membrane component Length = 321 Score = 544 bits (1401), Expect = e-153, Method: Compositional matrix adjust. Identities = 268/314 (85%), Positives = 293/314 (93%), Gaps = 3/314 (0%) Query: 12 ANAGSTVPR---SSGSLLNFVKKHYFLYLMLAPALILTLIFKYGPMYGAIIAFKDFSPIK 68 AN G+ V + S+G L FVKK+YFLY++LAPALILTLIFKY PMYGA+IAFKDFSPIK Sbjct: 8 ANQGAGVIKGRSSAGRTLAFVKKNYFLYILLAPALILTLIFKYVPMYGAVIAFKDFSPIK 67 Query: 69 GILGSEWVGFYNFNKFLSSPNFEVIFMNTLKLSFFGLILSFPVPILLALMLNQVRKSAIK 128 GILGSEWVG +F KF++SPNF+VIFMNTLKLSFFGLI SFPVPILLALMLNQVRK+A+K Sbjct: 68 GILGSEWVGLKHFEKFIASPNFDVIFMNTLKLSFFGLIFSFPVPILLALMLNQVRKAAVK 127 Query: 129 KNIQLFLYAPNFISVVVVVGMLFIFLSPTGPINQLLTWATGEPVMFMSRPEYFRWIYILS 188 KNIQLFLYAPNFISVVV+VGMLFIFLSPTGPINQL+ W TG P+MFMS+PEYFRWIYILS Sbjct: 128 KNIQLFLYAPNFISVVVIVGMLFIFLSPTGPINQLVIWMTGSPLMFMSQPEYFRWIYILS 187 Query: 189 DIWTSAGWASIIYVAALANVDPELHNAANLDGANLLQRIRHIDLPTIRPIMAIVFILAAG 248 DIW AGWASIIYVAALANVDPELHNAA+LDGANLLQRIRHIDLPTIRPIMAIVFILAAG Sbjct: 188 DIWQGAGWASIIYVAALANVDPELHNAASLDGANLLQRIRHIDLPTIRPIMAIVFILAAG 247 Query: 249 GIMSIGFEKAYLMQTATNLPTSEIIPTYVYKIGLQSGDYAYSAAVGLFNSLINVVLLITV 308 GIMSIGFEKAYLMQT+ NLPTSEII TYVYK+GLQSGDYAYSAAVGLFNS+INV+LL+TV Sbjct: 248 GIMSIGFEKAYLMQTSMNLPTSEIIATYVYKVGLQSGDYAYSAAVGLFNSVINVILLVTV 307 Query: 309 NFIVKKLNEGDGLY 322 NFIV+KLNEG+GLY Sbjct: 308 NFIVRKLNEGEGLY 321 >B1D6C6.1 B1D6C6_9BACL Binding-protein-dependent transport systems inner membrane component Length = 309 Score = 450 bits (1158), Expect = e-125, Method: Compositional matrix adjust. Identities = 217/303 (71%), Positives = 263/303 (86%) Query: 20 RSSGSLLNFVKKHYFLYLMLAPALILTLIFKYGPMYGAIIAFKDFSPIKGILGSEWVGFY 79 R S + +V ++Y LYL L PA++LT++FKY PMYG+IIAFK+FSP+KGI+GSEWVG Sbjct: 7 RQKPSWIYYVFRNYTLYLFLLPAVVLTIVFKYVPMYGSIIAFKNFSPLKGIMGSEWVGLE 66 Query: 80 NFNKFLSSPNFEVIFMNTLKLSFFGLILSFPVPILLALMLNQVRKSAIKKNIQLFLYAPN 139 NFN+FLSSPNF IFMNTLKLS +GL+L FPVPI+LALMLNQ+R + IKKNIQL LYAPN Sbjct: 67 NFNRFLSSPNFYDIFMNTLKLSVYGLLLGFPVPIVLALMLNQIRGARIKKNIQLILYAPN 126 Query: 140 FISVVVVVGMLFIFLSPTGPINQLLTWATGEPVMFMSRPEYFRWIYILSDIWTSAGWASI 199 FISVVV+ GMLF+FLSPTG IN L+T T +P+ FMS P YFR +YILS IW AGWASI Sbjct: 127 FISVVVLTGMLFVFLSPTGVINSLVTMFTDKPISFMSDPAYFRTVYILSGIWQGAGWASI 186 Query: 200 IYVAALANVDPELHNAANLDGANLLQRIRHIDLPTIRPIMAIVFILAAGGIMSIGFEKAY 259 IYVAAL+NVDP+LH+AA +DGA+LL+RI HIDLPT++P+MA++FILAAGGIMSIG+EKA+ Sbjct: 187 IYVAALSNVDPQLHDAATVDGASLLRRIWHIDLPTLKPVMAVLFILAAGGIMSIGYEKAF 246 Query: 260 LMQTATNLPTSEIIPTYVYKIGLQSGDYAYSAAVGLFNSLINVVLLITVNFIVKKLNEGD 319 LMQTA N PTSEII TYVYK+GLQSGDYAYS A+GLFNS+IN++LL+ VN +VK+LNEG+ Sbjct: 247 LMQTAMNTPTSEIIATYVYKVGLQSGDYAYSTAIGLFNSIINIILLVLVNAVVKRLNEGE 306 Query: 320 GLY 322 GLY Sbjct: 307 GLY 309 >A5LNL9.1 A5LNL9_STRPN ABC transporter, permease protein Length = 305 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 185/298 (62%), Positives = 231/298 (77%), Gaps = 1/298 (0%) Query: 24 SLLNFVKKHYFLYLMLAPALILTLIFKYGPMYGAIIAFKDFSPIKGILGSEWVGFYNFNK 83 SL +KK L LM P L+LT IFKY PMYG +IAFKD++P+KGILGS+W+GF F K Sbjct: 9 SLWERIKKQKLLLLMTVPGLVLTFIFKYIPMYGVLIAFKDYNPLKGILGSDWIGFSEFTK 68 Query: 84 FLSSPNFEVIFMNTLKLSFFGLILSFPVPILLALMLNQVRKSAIKKNIQLFLYAPNFISV 143 F+SSPNF ++ NTLKLS +GL+L F PI+LA+MLNQ+ +KK IQL LYAPNFISV Sbjct: 69 FISSPNFGILLANTLKLSIYGLLLGFLPPIILAIMLNQLLSEKVKKRIQLILYAPNFISV 128 Query: 144 VVVVGMLFIFLSPTGPINQLLTWATGEPVMFMSRPEYFRWIYILSDIWTSAGWASIIYVA 203 VV+VGM+F+F S GPIN L+ G V F++ P++FR +YI S IW GWAS +Y A Sbjct: 129 VVIVGMIFLFFSVGGPINNFLS-MFGMKVDFLTNPDFFRPLYIFSGIWQGMGWASTLYTA 187 Query: 204 ALANVDPELHNAANLDGANLLQRIRHIDLPTIRPIMAIVFILAAGGIMSIGFEKAYLMQT 263 L NVDP L AA LDGAN+ QRI HID+P ++PIM I F+LAAGGIM++G+EKA+LMQT Sbjct: 188 TLVNVDPALVEAARLDGANIFQRIWHIDIPALKPIMVIQFVLAAGGIMNVGYEKAFLMQT 247 Query: 264 ATNLPTSEIIPTYVYKIGLQSGDYAYSAAVGLFNSLINVVLLITVNFIVKKLNEGDGL 321 + NLPTSEII TYVYK+GL SGDY+YS AVGLFN++INVVLL+ VN IVK++N G+G+ Sbjct: 248 SLNLPTSEIISTYVYKVGLVSGDYSYSTAVGLFNAVINVVLLVAVNQIVKRMNNGEGI 305 >Q97P46.1 Q97P46_STRPN ABC transporter, permease protein Length = 305 Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust. Identities = 184/298 (61%), Positives = 230/298 (77%), Gaps = 1/298 (0%) Query: 24 SLLNFVKKHYFLYLMLAPALILTLIFKYGPMYGAIIAFKDFSPIKGILGSEWVGFYNFNK 83 SL +KK L LM P L+LT IFKY PMYG +IAFKD++P+KGILGS+W+GF F K Sbjct: 9 SLWERIKKQKLLLLMTVPGLVLTFIFKYIPMYGVLIAFKDYNPLKGILGSDWIGFSEFTK 68 Query: 84 FLSSPNFEVIFMNTLKLSFFGLILSFPVPILLALMLNQVRKSAIKKNIQLFLYAPNFISV 143 F+SSPNF ++ NTLKLS +GL+L F PI+LA+MLNQ+ +KK IQL LYAPNFISV Sbjct: 69 FISSPNFGILLANTLKLSIYGLLLGFLPPIILAIMLNQLLSEKVKKRIQLILYAPNFISV 128 Query: 144 VVVVGMLFIFLSPTGPINQLLTWATGEPVMFMSRPEYFRWIYILSDIWTSAGWASIIYVA 203 VV+VGM+F+F S GPIN L+ G F++ P++FR +YI S IW GWAS +Y A Sbjct: 129 VVIVGMIFLFFSVGGPINNFLS-MFGMKADFLTNPDFFRPLYIFSGIWQGMGWASTLYTA 187 Query: 204 ALANVDPELHNAANLDGANLLQRIRHIDLPTIRPIMAIVFILAAGGIMSIGFEKAYLMQT 263 L NVDP L AA LDGAN+ QRI HID+P ++PIM I F+LAAGGIM++G+EKA+LMQT Sbjct: 188 TLVNVDPALVEAARLDGANIFQRIWHIDIPALKPIMVIQFVLAAGGIMNVGYEKAFLMQT 247 Query: 264 ATNLPTSEIIPTYVYKIGLQSGDYAYSAAVGLFNSLINVVLLITVNFIVKKLNEGDGL 321 + NLPTSEII TYVYK+GL SGDY+YS AVGLFN++INVVLL+ VN IVK++N G+G+ Sbjct: 248 SLNLPTSEIISTYVYKVGLVSGDYSYSTAVGLFNAVINVVLLVAVNQIVKRMNNGEGI 305 >C1CT38.1 C1CT38_STRZT Protein LplB Length = 305 Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust. Identities = 184/298 (61%), Positives = 230/298 (77%), Gaps = 1/298 (0%) Query: 24 SLLNFVKKHYFLYLMLAPALILTLIFKYGPMYGAIIAFKDFSPIKGILGSEWVGFYNFNK 83 SL +KK L LM P L+LT IFKY PMYG +IAFKD++P+KGILGS+W+GF F K Sbjct: 9 SLWERIKKQKLLLLMTVPGLVLTFIFKYIPMYGVLIAFKDYNPLKGILGSDWIGFSEFTK 68 Query: 84 FLSSPNFEVIFMNTLKLSFFGLILSFPVPILLALMLNQVRKSAIKKNIQLFLYAPNFISV 143 F+SSPNF ++ NTLKLS +GL+L F PI+LA+MLNQ+ +KK IQL LYAPNFISV Sbjct: 69 FISSPNFGILLANTLKLSIYGLLLGFLPPIILAIMLNQLLSEKVKKRIQLILYAPNFISV 128 Query: 144 VVVVGMLFIFLSPTGPINQLLTWATGEPVMFMSRPEYFRWIYILSDIWTSAGWASIIYVA 203 VV+VGM+F+F S GPIN L+ G F++ P++FR +YI S IW GWAS +Y A Sbjct: 129 VVIVGMIFLFFSVGGPINNFLS-MFGMKADFLTNPDFFRPLYIFSGIWQGMGWASTLYTA 187 Query: 204 ALANVDPELHNAANLDGANLLQRIRHIDLPTIRPIMAIVFILAAGGIMSIGFEKAYLMQT 263 L NVDP L AA LDGAN+ QRI HID+P ++PIM I F+LAAGGIM++G+EKA+LMQT Sbjct: 188 TLVNVDPALVEAARLDGANIFQRIWHIDIPALKPIMVIQFVLAAGGIMNVGYEKAFLMQT 247 Query: 264 ATNLPTSEIIPTYVYKIGLQSGDYAYSAAVGLFNSLINVVLLITVNFIVKKLNEGDGL 321 + NLPTSEII TYVYK+GL SGDY+YS AVGLFN++INVVLL+ VN IVK++N G+G+ Sbjct: 248 SLNLPTSEIISTYVYKVGLVSGDYSYSTAVGLFNAVINVVLLVAVNQIVKRMNNGEGI 305 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.142 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,860,713,055 Number of extensions: 77163603 Number of successful extensions: 267795 Number of sequences better than 1.0e-05: 5117 Number of HSP's gapped: 263832 Number of HSP's successfully gapped: 5160 Length of query: 322 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 186 Effective length of database: 1,779,438,163 Effective search space: 330975498318 Effective search space used: 330975498318 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)