BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0533.0005.p (293 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D6C7.1 B1D6C7_9BACL Binding-protein-dependent transport system... 352 2e-95 B9DTH8.1 B9DTH8_STRU0 Binding-protein-dependent transport system... 332 2e-89 Q97P47.1 Q97P47_STRPN ABC transporter, permease protein 326 2e-87 B2ISF6.1 B2ISF6_STRPS ABC transporter, permease protein 326 2e-87 C1CT37.1 C1CT37_STRZT Protein LplC 325 2e-87 >B1D6C7.1 B1D6C7_9BACL Binding-protein-dependent transport systems inner membrane component Length = 293 Score = 352 bits (904), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 171/256 (66%), Positives = 209/256 (81%) Query: 38 SFMDPSVLLSHGLSFKISDWSLDGYKMILTNPAMIRGFGNAVFYSVAFAILTVLVSICAG 97 SF++P+VLL+ GLS SDWS+ GY+ IL N AM+RGF NA+ YS FA+ TV+VS+ A Sbjct: 38 SFLNPNVLLTKGLSLNASDWSITGYEKILGNAAMLRGFLNAILYSTGFALATVVVSVFAA 97 Query: 98 YALSDDRLKGRXXXXXXXXXXXXXXGGLVPTYLLVKNLGLLDTVWAVIIPGAVNVWNIIL 157 Y LS + G+ GGL+PTYL+VK+L LL+T+WA+I+PGAV+V+NIIL Sbjct: 98 YPLSLEGFVGKRLFMVFFLITMFLSGGLIPTYLVVKDLNLLNTIWAIILPGAVSVYNIIL 157 Query: 158 SRTFFKGVPNELREAANVDGASEWRIFIGIVLPLSKPIIFVLALYAFVGQWNSYFDAMIY 217 +RT+F G+P EL +AA +DGA++ R+F I+LPLSKPIIFVLALYAFVGQWNSYFDAMIY Sbjct: 158 ARTYFAGIPKELNQAAQIDGATDQRLFFQIILPLSKPIIFVLALYAFVGQWNSYFDAMIY 217 Query: 218 LDNPNLHPLQLVLRSILIQNQVDPGMISDQLAMAEMKRLSEIIKYAAIVVSSLPLIIMYP 277 LDN L PLQLVLRSILIQNQVDPGMISD LA AE+K+LSE+IKY++IVVSSLPLIIMYP Sbjct: 218 LDNNQLFPLQLVLRSILIQNQVDPGMISDILAQAELKKLSEMIKYSSIVVSSLPLIIMYP 277 Query: 278 FFQKYFEKGVMLGSLK 293 FFQKYFEKGVM+GS+K Sbjct: 278 FFQKYFEKGVMVGSIK 293 >B9DTH8.1 B9DTH8_STRU0 Binding-protein-dependent transport system membrane protein Length = 295 Score = 332 bits (852), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 157/256 (61%), Positives = 206/256 (80%) Query: 38 SFMDPSVLLSHGLSFKISDWSLDGYKMILTNPAMIRGFGNAVFYSVAFAILTVLVSICAG 97 SFMDP VL + G+S DW++DGYK +L + A++RGF N++ YS AFA+LTV++S+ Sbjct: 39 SFMDPQVLANQGISLNPQDWTVDGYKRVLGDNAILRGFINSLIYSTAFAVLTVIISVLTA 98 Query: 98 YALSDDRLKGRXXXXXXXXXXXXXXGGLVPTYLLVKNLGLLDTVWAVIIPGAVNVWNIIL 157 Y LS L GR GGLVPTYLL+KNLG+L+T+W++I+PGAVNVWNIIL Sbjct: 99 YPLSKKDLVGRRWINYFLIFTMFFGGGLVPTYLLIKNLGMLNTMWSIIVPGAVNVWNIIL 158 Query: 158 SRTFFKGVPNELREAANVDGASEWRIFIGIVLPLSKPIIFVLALYAFVGQWNSYFDAMIY 217 +RT+F+G+P+EL EAA +DGA++++IF+ I+LPL+KPI+FVL LYAFVGQWNSYFDAMIY Sbjct: 159 ARTYFQGLPDELVEAAVIDGANDFQIFLKIMLPLAKPIMFVLFLYAFVGQWNSYFDAMIY 218 Query: 218 LDNPNLHPLQLVLRSILIQNQVDPGMISDQLAMAEMKRLSEIIKYAAIVVSSLPLIIMYP 277 + +PNL PLQLVLR+ILIQ++V MI Q AM EMK+++E+IKYA I++SSLPLI+MYP Sbjct: 219 IKDPNLAPLQLVLRNILIQSEVSQNMIGAQAAMNEMKKIAEMIKYATIIISSLPLIVMYP 278 Query: 278 FFQKYFEKGVMLGSLK 293 FFQKYF+KG+M GSLK Sbjct: 279 FFQKYFDKGIMAGSLK 294 >Q97P47.1 Q97P47_STRPN ABC transporter, permease protein Length = 305 Score = 326 bits (836), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 158/256 (61%), Positives = 199/256 (77%) Query: 38 SFMDPSVLLSHGLSFKISDWSLDGYKMILTNPAMIRGFGNAVFYSVAFAILTVLVSICAG 97 SFMDP VL+S G+SF +DW+++GY+ + ++ +++RGF N++ YS FA LTVL+S+ Sbjct: 49 SFMDPKVLVSRGISFNPADWTVEGYQRVFSDQSILRGFINSLLYSFGFAALTVLLSVFTA 108 Query: 98 YALSDDRLKGRXXXXXXXXXXXXXXGGLVPTYLLVKNLGLLDTVWAVIIPGAVNVWNIIL 157 Y LS L GR GGLVPTYLLVK LG+L+T WA+I+PGAVNVWNIIL Sbjct: 109 YPLSKKDLVGRRWINYFLIVTMFFGGGLVPTYLLVKELGMLNTPWAIIVPGAVNVWNIIL 168 Query: 158 SRTFFKGVPNELREAANVDGASEWRIFIGIVLPLSKPIIFVLALYAFVGQWNSYFDAMIY 217 +R +F+G+P EL EAA +DGA++ +IF I+LPL+KPI+FVL LYAFVGQWNSYFDAMIY Sbjct: 169 ARAYFQGLPEELVEAAVIDGANDLQIFFKIMLPLAKPIMFVLFLYAFVGQWNSYFDAMIY 228 Query: 218 LDNPNLHPLQLVLRSILIQNQVDPGMISDQLAMAEMKRLSEIIKYAAIVVSSLPLIIMYP 277 + +PNL PLQLVLR ILIQ+Q MI Q AM EMKRL+E+IKYA IV+SSLPLI+MYP Sbjct: 229 IKDPNLEPLQLVLRKILIQSQPGQDMIGAQAAMNEMKRLAELIKYATIVISSLPLIVMYP 288 Query: 278 FFQKYFEKGVMLGSLK 293 FFQKYF+KG+M GSLK Sbjct: 289 FFQKYFDKGIMAGSLK 304 >B2ISF6.1 B2ISF6_STRPS ABC transporter, permease protein Length = 305 Score = 326 bits (836), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 158/256 (61%), Positives = 199/256 (77%) Query: 38 SFMDPSVLLSHGLSFKISDWSLDGYKMILTNPAMIRGFGNAVFYSVAFAILTVLVSICAG 97 SFMDP VL+S G+SF +DW+++GY+ + ++ +++RGF N++ YS FA LTVL+S+ Sbjct: 49 SFMDPKVLVSRGISFNPADWTVEGYQRVFSDQSILRGFINSLLYSFGFAALTVLLSVFTA 108 Query: 98 YALSDDRLKGRXXXXXXXXXXXXXXGGLVPTYLLVKNLGLLDTVWAVIIPGAVNVWNIIL 157 Y LS L GR GGLVPTYLLVK LG+L+T WA+I+PGAVNVWNIIL Sbjct: 109 YPLSKKDLVGRRWINYFLIVTMFFGGGLVPTYLLVKELGMLNTPWAIIVPGAVNVWNIIL 168 Query: 158 SRTFFKGVPNELREAANVDGASEWRIFIGIVLPLSKPIIFVLALYAFVGQWNSYFDAMIY 217 +R +F+G+P EL EAA +DGA++ +IF I+LPL+KPI+FVL LYAFVGQWNSYFDAMIY Sbjct: 169 ARAYFQGLPEELVEAAVIDGANDLQIFFKIMLPLAKPIMFVLFLYAFVGQWNSYFDAMIY 228 Query: 218 LDNPNLHPLQLVLRSILIQNQVDPGMISDQLAMAEMKRLSEIIKYAAIVVSSLPLIIMYP 277 + +PNL PLQLVLR ILIQ+Q MI Q AM EMKRL+E+IKYA IV+SSLPLI+MYP Sbjct: 229 IKDPNLEPLQLVLRKILIQSQPGQDMIGAQAAMNEMKRLAELIKYATIVISSLPLIVMYP 288 Query: 278 FFQKYFEKGVMLGSLK 293 FFQKYF+KG+M GSLK Sbjct: 289 FFQKYFDKGIMAGSLK 304 >C1CT37.1 C1CT37_STRZT Protein LplC Length = 296 Score = 325 bits (834), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 158/256 (61%), Positives = 199/256 (77%) Query: 38 SFMDPSVLLSHGLSFKISDWSLDGYKMILTNPAMIRGFGNAVFYSVAFAILTVLVSICAG 97 SFMDP VL+S G+SF +DW+++GY+ + ++ +++RGF N++ YS FA LTVL+S+ Sbjct: 40 SFMDPKVLVSRGISFNPADWTVEGYQRVFSDQSILRGFINSLLYSFGFAALTVLLSVFTA 99 Query: 98 YALSDDRLKGRXXXXXXXXXXXXXXGGLVPTYLLVKNLGLLDTVWAVIIPGAVNVWNIIL 157 Y LS L GR GGLVPTYLLVK LG+L+T WA+I+PGAVNVWNIIL Sbjct: 100 YPLSKKDLVGRRWINYFLIVTMFFGGGLVPTYLLVKELGMLNTPWAIIVPGAVNVWNIIL 159 Query: 158 SRTFFKGVPNELREAANVDGASEWRIFIGIVLPLSKPIIFVLALYAFVGQWNSYFDAMIY 217 +R +F+G+P EL EAA +DGA++ +IF I+LPL+KPI+FVL LYAFVGQWNSYFDAMIY Sbjct: 160 ARAYFQGLPEELVEAAVIDGANDLQIFFKIMLPLAKPIMFVLFLYAFVGQWNSYFDAMIY 219 Query: 218 LDNPNLHPLQLVLRSILIQNQVDPGMISDQLAMAEMKRLSEIIKYAAIVVSSLPLIIMYP 277 + +PNL PLQLVLR ILIQ+Q MI Q AM EMKRL+E+IKYA IV+SSLPLI+MYP Sbjct: 220 IKDPNLEPLQLVLRKILIQSQPGQDMIGAQAAMNEMKRLAELIKYATIVISSLPLIVMYP 279 Query: 278 FFQKYFEKGVMLGSLK 293 FFQKYF+KG+M GSLK Sbjct: 280 FFQKYFDKGIMAGSLK 295 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.143 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,498,340,454 Number of extensions: 55383019 Number of successful extensions: 199073 Number of sequences better than 1.0e-05: 5591 Number of HSP's gapped: 191815 Number of HSP's successfully gapped: 5591 Length of query: 293 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 159 Effective length of database: 1,798,280,193 Effective search space: 285926550687 Effective search space used: 285926550687 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)