BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0533.0004.p (539 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KI93.1 B3KI93_9BACI Extracellular solute-binding protein family 1 824 0.0 B1D6C8.1 B1D6C8_9BACL Extracellular solute-binding protein family 1 738 0.0 B9WU37.1 B9WU37_STRSU Extracellular solute-binding protein family 1 633 e-179 B2ISF0.1 B2ISF0_STRPS ABC transporter, substrate-binding protein 632 e-179 C1CG16.1 C1CG16_STRZJ ABC transporter, substrate-binding protein 631 e-179 >B3KI93.1 B3KI93_9BACI Extracellular solute-binding protein family 1 Length = 533 Score = 824 bits (2128), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/496 (78%), Positives = 442/496 (89%) Query: 43 QDPSGKVTLNFITQSSPLAPADPNDKLINKRLEEKTNVHINWKNFTKDVFVEKRNLAVAS 102 + P GKVTLN +TQSSPLAPADPN+KLINKRLEEKT +HI WKN+T DVF EKRNLAVAS Sbjct: 38 ESPDGKVTLNVLTQSSPLAPADPNEKLINKRLEEKTGIHIKWKNYTSDVFAEKRNLAVAS 97 Query: 103 GDLPDAIFNADYSDYELLKLAKDGTIIPLNDLIEKNMPNFKKVLEEAPEYKSMITAPDGN 162 GDLPDAIF+A Y DY+LLKLAKDG IIP+ DLIE++MPN KKVLE+APEY +MITAPDG+ Sbjct: 98 GDLPDAIFDAGYGDYDLLKLAKDGVIIPVEDLIEQHMPNLKKVLEQAPEYVNMITAPDGH 157 Query: 163 IYAFPWIEELGNGKERIQAVDSMPWINVEWLKKLGLEMPKTTDELKKVLIAFKTQDPNGN 222 IY+FPWIEELG+GKERIQ+VD+ PWINVEWL LGL+MP TT+ELK VL AFKTQDPNGN Sbjct: 158 IYSFPWIEELGSGKERIQSVDNFPWINVEWLDALGLDMPTTTEELKTVLKAFKTQDPNGN 217 Query: 223 GQADEIPLSFINKPGAEDLAFLFASFGLGENPDHAVVSDDGKVIFTAAEEGYKNAISFIN 282 GQADEIPLSFINKPG EDL FLFASFGLGEN DH VV+DDGKV+FTAAEEGYK AI+FI+ Sbjct: 218 GQADEIPLSFINKPGGEDLTFLFASFGLGENWDHTVVTDDGKVVFTAAEEGYKEAIAFIH 277 Query: 283 ELYKEGLIDIEAYTQDWSTYLAKGKEQRYGLYFSWDKANISGANDAYDVMPPLAGPDGEV 342 ELY+EGLIDIEA+ QDW+TYLAKGK+ RYG+YF+WDKANI+G ND YD+MPPLAGP GE+ Sbjct: 278 ELYEEGLIDIEAFQQDWNTYLAKGKDHRYGMYFTWDKANITGMNDTYDLMPPLAGPTGEI 337 Query: 343 NVTRTNGLGLGRGKMVVTSANKNLETTAKWVDQLYDPLQSVQDNWGTYGDETQQNIFELD 402 NVTRTNG+GL RG++V+TS+NK LE TAKW+D +Y+PLQSVQ+NWGTYGD+TQQNIFELD Sbjct: 338 NVTRTNGIGLDRGRLVITSSNKKLEETAKWIDAMYEPLQSVQNNWGTYGDDTQQNIFELD 397 Query: 403 EAKGMLKHLPLEGAAPVELREKTSIGGPLAVLDSYYGKYTTMPDDAKGRMDIIKNIMAPK 462 EAKGMLKHLPLEG APVELR+KTSI GPLA+LD YYGKYTTMPDDA R+ ++K++M P Sbjct: 398 EAKGMLKHLPLEGTAPVELRQKTSIAGPLAILDEYYGKYTTMPDDAAWRLKLMKDVMVPH 457 Query: 463 MKAENVMPSVFNSIEELDRLTTIETDLFAYVLRMRTEWYQNGKVNEQWGEYLKELDRLGL 522 MKAEN P VF SI+ELDRL+TIE DLF Y+ RMRTEWYQNGKV+++W YLKELDRLGL Sbjct: 458 MKAENTYPKVFFSIDELDRLSTIEADLFPYLERMRTEWYQNGKVDQEWDAYLKELDRLGL 517 Query: 523 QEWLKIKQDGYDRATK 538 QEWL IKQ GYDR K Sbjct: 518 QEWLTIKQTGYDRNMK 533 >B1D6C8.1 B1D6C8_9BACL Extracellular solute-binding protein family 1 Length = 537 Score = 738 bits (1904), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/491 (71%), Positives = 416/491 (84%) Query: 48 KVTLNFITQSSPLAPADPNDKLINKRLEEKTNVHINWKNFTKDVFVEKRNLAVASGDLPD 107 KVTLNF+TQSSPLAP DPN KL+ KRLEEKT VHINWKNFT D FVEKRNLAVASGDLPD Sbjct: 46 KVTLNFMTQSSPLAPTDPNQKLVYKRLEEKTGVHINWKNFTSDSFVEKRNLAVASGDLPD 105 Query: 108 AIFNADYSDYELLKLAKDGTIIPLNDLIEKNMPNFKKVLEEAPEYKSMITAPDGNIYAFP 167 AI +A YSDY+LLKL D TIIPL D+I K MPN +KVL +APEYK+M+TAPDG+IY+FP Sbjct: 106 AILDAAYSDYDLLKLGSDKTIIPLEDVIAKYMPNLQKVLADAPEYKAMMTAPDGHIYSFP 165 Query: 168 WIEELGNGKERIQAVDSMPWINVEWLKKLGLEMPKTTDELKKVLIAFKTQDPNGNGQADE 227 WIEELG GKE I +V+ +PWINVEWL KLGL+MP TT+ELK VL+AFK DPNGNGQADE Sbjct: 166 WIEELGAGKESIHSVNDIPWINVEWLNKLGLKMPTTTEELKNVLLAFKKGDPNGNGQADE 225 Query: 228 IPLSFINKPGAEDLAFLFASFGLGENPDHAVVSDDGKVIFTAAEEGYKNAISFINELYKE 287 IPLS + G EDL FLF SFGLG+N DH VV+DDGKV+FTA ++GYK+A++++++LY Sbjct: 226 IPLSVVMNNGNEDLNFLFGSFGLGDNGDHTVVTDDGKVVFTADQDGYKDAVNYLHDLYAL 285 Query: 288 GLIDIEAYTQDWSTYLAKGKEQRYGLYFSWDKANISGANDAYDVMPPLAGPDGEVNVTRT 347 LID E++ QD++T+LAKG++ RYGLYF+WDKANI+G ND YD+M PLAGP GEVNVTRT Sbjct: 286 DLIDEESFEQDYNTFLAKGQDNRYGLYFTWDKANITGNNDKYDLMQPLAGPSGEVNVTRT 345 Query: 348 NGLGLGRGKMVVTSANKNLETTAKWVDQLYDPLQSVQDNWGTYGDETQQNIFELDEAKGM 407 N G RG+MV+TSANKN+E TAKW+DQLY+PLQSVQDNWGTYGDETQQNIF+ DEAKGM Sbjct: 346 NNYGFDRGRMVITSANKNIELTAKWIDQLYEPLQSVQDNWGTYGDETQQNIFKFDEAKGM 405 Query: 408 LKHLPLEGAAPVELREKTSIGGPLAVLDSYYGKYTTMPDDAKGRMDIIKNIMAPKMKAEN 467 L+HLPLEGAAP ELR+KT+IGGPLA+LD YYGKYTT PDDA R++I+K + P MKAEN Sbjct: 406 LEHLPLEGAAPAELRQKTNIGGPLAILDEYYGKYTTKPDDAAWRLNIMKERLVPYMKAEN 465 Query: 468 VMPSVFNSIEELDRLTTIETDLFAYVLRMRTEWYQNGKVNEQWGEYLKELDRLGLQEWLK 527 P +F S+E+ +L+TIETDLFAYV R R EW + GKVNE+W +YLKEL+RLGL++WL+ Sbjct: 466 NYPRIFFSLEDQKQLSTIETDLFAYVNRKRAEWIKTGKVNEEWADYLKELNRLGLEKWLE 525 Query: 528 IKQDGYDRATK 538 IKQ+GYD K Sbjct: 526 IKQNGYDNYIK 536 >B9WU37.1 B9WU37_STRSU Extracellular solute-binding protein family 1 Length = 536 Score = 633 bits (1632), Expect = e-179, Method: Compositional matrix adjust. Identities = 302/487 (62%), Positives = 370/487 (75%), Gaps = 1/487 (0%) Query: 49 VTLNFITQSSPLAPADPNDKLINKRLEEKTNVHINWKNFTKDVFVEKRNLAVASGDLPDA 108 VTL F+T SSPLAPADPNDKLI +RLEE+T VHI+W N+ D F EKRNL +ASGDLPDA Sbjct: 46 VTLKFMTASSPLAPADPNDKLIFQRLEEETGVHIDWTNYQSD-FGEKRNLDIASGDLPDA 104 Query: 109 IFNADYSDYELLKLAKDGTIIPLNDLIEKNMPNFKKVLEEAPEYKSMITAPDGNIYAFPW 168 I N SD EL+ AK G I+P+ DLI+K+MPN KK+L+E PEY+SMITAPDG+IY+FPW Sbjct: 105 IHNDGASDVELMNWAKQGVIVPVEDLIDKHMPNLKKILDENPEYRSMITAPDGHIYSFPW 164 Query: 169 IEELGNGKERIQAVDSMPWINVEWLKKLGLEMPKTTDELKKVLIAFKTQDPNGNGQADEI 228 IEELG GKE I V+ + WIN EWL KLGLEMPKTTD+L KVL AFKTQDPNGNG+ADEI Sbjct: 165 IEELGEGKESIHTVNDIAWINKEWLNKLGLEMPKTTDDLIKVLEAFKTQDPNGNGKADEI 224 Query: 229 PLSFINKPGAEDLAFLFASFGLGENPDHAVVSDDGKVIFTAAEEGYKNAISFINELYKEG 288 P+SF+N G ED LF +FG+G+N DH VV++DG V FTA E YK + F+ L ++G Sbjct: 225 PMSFVNGNGGEDFKILFGAFGVGDNDDHIVVNNDGTVDFTADNEDYKEGVEFMRTLQEKG 284 Query: 289 LIDIEAYTQDWSTYLAKGKEQRYGLYFSWDKANISGANDAYDVMPPLAGPDGEVNVTRTN 348 LID EA+ QDW+TYLAKG E YG+YF+WDKANI+G N+ YD++P LAGPDG ++TRTN Sbjct: 285 LIDPEAFEQDWNTYLAKGSENLYGVYFTWDKANITGMNETYDILPVLAGPDGTKHITRTN 344 Query: 349 GLGLGRGKMVVTSANKNLETTAKWVDQLYDPLQSVQDNWGTYGDETQQNIFELDEAKGML 408 G+G R +MV+TSANKNLE TAKW+D Y P+QSVQ+NWGTYGDETQQNIFE D A L Sbjct: 345 GMGFQRDRMVITSANKNLELTAKWIDAQYKPIQSVQNNWGTYGDETQQNIFEYDAATDSL 404 Query: 409 KHLPLEGAAPVELREKTSIGGPLAVLDSYYGKYTTMPDDAKGRMDIIKNIMAPKMKAENV 468 KHLPL G AP ELR+KT +GGPLA+LD YYG TTMPDDAK R+D++ + ++ Sbjct: 405 KHLPLNGTAPGELRQKTEVGGPLAILDEYYGTVTTMPDDAKWRLDLMHATYLDYVTNNDI 464 Query: 469 MPSVFNSIEELDRLTTIETDLFAYVLRMRTEWYQNGKVNEQWGEYLKELDRLGLQEWLKI 528 P VF E+LD++ +E D+ ++ R R EW NG + E+W YLKEL+ GL +WL I Sbjct: 465 YPRVFMEQEDLDKIAQVEADMNDFIYRKRAEWIVNGGIEEEWDSYLKELESYGLSDWLAI 524 Query: 529 KQDGYDR 535 KQ YD+ Sbjct: 525 KQKYYDQ 531 >B2ISF0.1 B2ISF0_STRPS ABC transporter, substrate-binding protein Length = 570 Score = 632 bits (1629), Expect = e-179, Method: Compositional matrix adjust. Identities = 297/488 (60%), Positives = 378/488 (77%), Gaps = 1/488 (0%) Query: 48 KVTLNFITQSSPLAPADPNDKLINKRLEEKTNVHINWKNFTKDVFVEKRNLAVASGDLPD 107 K TL F+T SSPL+P DPN+KLI +RLE++T VHI+W N+ D F EKRNL ++SGDLPD Sbjct: 78 KKTLKFMTASSPLSPKDPNEKLILQRLEKETGVHIDWTNYQSD-FAEKRNLDISSGDLPD 136 Query: 108 AIFNADYSDYELLKLAKDGTIIPLNDLIEKNMPNFKKVLEEAPEYKSMITAPDGNIYAFP 167 AI N SD +L+ AK G IIP+ DLI+K MPN KK+L+E PEYK+++TAPDG+IY+FP Sbjct: 137 AIHNDGASDVDLMNWAKKGVIIPVEDLIDKYMPNLKKILDEKPEYKALMTAPDGHIYSFP 196 Query: 168 WIEELGNGKERIQAVDSMPWINVEWLKKLGLEMPKTTDELKKVLIAFKTQDPNGNGQADE 227 WIEELG+GKE I +V+ M WIN +WLKKLGLEMPKTTD+L KVL AFK DPNGNG+ADE Sbjct: 197 WIEELGDGKESIHSVNDMAWINKDWLKKLGLEMPKTTDDLIKVLEAFKNGDPNGNGEADE 256 Query: 228 IPLSFINKPGAEDLAFLFASFGLGENPDHAVVSDDGKVIFTAAEEGYKNAISFINELYKE 287 IP SFI+ G ED FLFA+FG+G+N DH VV +DGKV FTA + YK + FI +L ++ Sbjct: 257 IPFSFISGNGNEDFKFLFAAFGIGDNDDHLVVGNDGKVDFTADNDNYKEGVKFIRQLQEK 316 Query: 288 GLIDIEAYTQDWSTYLAKGKEQRYGLYFSWDKANISGANDAYDVMPPLAGPDGEVNVTRT 347 GLID EA+ DW++Y+AKG +Q++G+YF+WDK N++G+N++YDV+P LAGP G+ +V RT Sbjct: 317 GLIDKEAFEHDWNSYIAKGHDQKFGVYFTWDKNNVTGSNESYDVLPVLAGPSGQKHVART 376 Query: 348 NGLGLGRGKMVVTSANKNLETTAKWVDQLYDPLQSVQDNWGTYGDETQQNIFELDEAKGM 407 NG+G R KMV+TS NKNLE TAKW+D Y PLQSVQ+NWGTYGD+ QQNIFELD+A Sbjct: 377 NGMGFARDKMVITSVNKNLELTAKWIDAQYAPLQSVQNNWGTYGDDKQQNIFELDQASNS 436 Query: 408 LKHLPLEGAAPVELREKTSIGGPLAVLDSYYGKYTTMPDDAKGRMDIIKNIMAPKMKAEN 467 LKHLPL G AP ELR+KT +GGPLA+LDSYYGK TTMPDDAK R+D+IK P M +N Sbjct: 437 LKHLPLNGTAPAELRQKTEVGGPLAILDSYYGKVTTMPDDAKWRLDLIKEYYVPYMSNDN 496 Query: 468 VMPSVFNSIEELDRLTTIETDLFAYVLRMRTEWYQNGKVNEQWGEYLKELDRLGLQEWLK 527 P VF + E+LD++ IE D+ Y+ R R EW NG ++ +W +Y KEL++ GL ++L Sbjct: 497 NYPRVFMTQEDLDKIAHIEADMNDYIYRKRAEWIVNGNIDTEWDDYKKELEKYGLSDYLA 556 Query: 528 IKQDGYDR 535 IKQ YD+ Sbjct: 557 IKQKYYDQ 564 >C1CG16.1 C1CG16_STRZJ ABC transporter, substrate-binding protein Length = 538 Score = 631 bits (1627), Expect = e-179, Method: Compositional matrix adjust. Identities = 297/488 (60%), Positives = 378/488 (77%), Gaps = 1/488 (0%) Query: 48 KVTLNFITQSSPLAPADPNDKLINKRLEEKTNVHINWKNFTKDVFVEKRNLAVASGDLPD 107 K TL F+T SSPL+P DPN+KLI +RLE++T VHI+W N+ D F EKRNL ++SGDLPD Sbjct: 46 KKTLKFMTASSPLSPKDPNEKLILQRLEKETGVHIDWTNYQSD-FAEKRNLDISSGDLPD 104 Query: 108 AIFNADYSDYELLKLAKDGTIIPLNDLIEKNMPNFKKVLEEAPEYKSMITAPDGNIYAFP 167 AI N SD +L+ AK G IIP+ DLI+K MPN KK+L+E PEYK+++TAPDG+IY+FP Sbjct: 105 AIHNDGASDVDLMNWAKKGVIIPVEDLIDKYMPNLKKILDEKPEYKALMTAPDGHIYSFP 164 Query: 168 WIEELGNGKERIQAVDSMPWINVEWLKKLGLEMPKTTDELKKVLIAFKTQDPNGNGQADE 227 WIEELG+GKE I +V+ M WIN +WLKKLGLEMPKTTD+L KVL AFK DPNGNG+ADE Sbjct: 165 WIEELGDGKESIHSVNDMAWINKDWLKKLGLEMPKTTDDLIKVLEAFKNGDPNGNGEADE 224 Query: 228 IPLSFINKPGAEDLAFLFASFGLGENPDHAVVSDDGKVIFTAAEEGYKNAISFINELYKE 287 IP SFI+ G ED FLFA+FG+G+N DH VV +DGKV FTA + YK + FI +L ++ Sbjct: 225 IPFSFISGNGNEDFKFLFAAFGIGDNDDHLVVGNDGKVDFTADNDNYKEGVKFIRQLQEK 284 Query: 288 GLIDIEAYTQDWSTYLAKGKEQRYGLYFSWDKANISGANDAYDVMPPLAGPDGEVNVTRT 347 GLID EA+ DW++Y+AKG +Q++G+YF+WDK N++G+N++YDV+P LAGP G+ +V RT Sbjct: 285 GLIDKEAFEHDWNSYIAKGHDQKFGVYFTWDKNNVTGSNESYDVLPVLAGPSGQKHVART 344 Query: 348 NGLGLGRGKMVVTSANKNLETTAKWVDQLYDPLQSVQDNWGTYGDETQQNIFELDEAKGM 407 NG+G R KMV+TS NKNLE TAKW+D Y PLQSVQ+NWGTYGD+ QQNIFELD+A Sbjct: 345 NGMGFARDKMVITSVNKNLELTAKWIDAQYAPLQSVQNNWGTYGDDKQQNIFELDQASNS 404 Query: 408 LKHLPLEGAAPVELREKTSIGGPLAVLDSYYGKYTTMPDDAKGRMDIIKNIMAPKMKAEN 467 LKHLPL G AP ELR+KT +GGPLA+LDSYYGK TTMPDDAK R+D+IK P M +N Sbjct: 405 LKHLPLNGTAPAELRQKTEVGGPLAILDSYYGKVTTMPDDAKWRLDLIKEYYVPYMSNDN 464 Query: 468 VMPSVFNSIEELDRLTTIETDLFAYVLRMRTEWYQNGKVNEQWGEYLKELDRLGLQEWLK 527 P VF + E+LD++ IE D+ Y+ R R EW NG ++ +W +Y KEL++ GL ++L Sbjct: 465 NYPRVFMTQEDLDKIAHIEADMNDYIYRKRAEWIVNGNIDTEWDDYKKELEKYGLSDYLA 524 Query: 528 IKQDGYDR 535 IKQ YD+ Sbjct: 525 IKQKYYDQ 532 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.134 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,290,236,188 Number of extensions: 148319958 Number of successful extensions: 296095 Number of sequences better than 1.0e-05: 282 Number of HSP's gapped: 295588 Number of HSP's successfully gapped: 283 Length of query: 539 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 398 Effective length of database: 1,732,333,088 Effective search space: 689468569024 Effective search space used: 689468569024 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 134 (56.2 bits)