BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0532.0011.p
         (146 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9J0R5.1 B9J0R5_BACCQ Transposase                                      64   5e-09
B9ITN4.1 B9ITN4_BACCQ Transposase                                      64   5e-09
C3G585.1 C3G585_BACTU Transposase                                      64   5e-09
C2VUT2.1 C2VUT2_BACCE Transposase                                      64   5e-09
C2MMM8.1 C2MMM8_BACCE Transposase                                      64   5e-09

>B9J0R5.1 B9J0R5_BACCQ Transposase
          Length = 359

 Score = 63.9 bits (154), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 29/36 (80%)

Query: 78  ADFGLKVPAAVVTSEGKTRFFGNGRENKYMKRKFRS 113
            D GLKVPA  +T + K RFFGNGR+NKYMKRKFRS
Sbjct: 174 VDLGLKVPAVAITDDDKVRFFGNGRQNKYMKRKFRS 209


>B9ITN4.1 B9ITN4_BACCQ Transposase
          Length = 359

 Score = 63.9 bits (154), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 29/36 (80%)

Query: 78  ADFGLKVPAAVVTSEGKTRFFGNGRENKYMKRKFRS 113
            D GLKVPA  +T + K RFFGNGR+NKYMKRKFRS
Sbjct: 174 VDLGLKVPAVAITDDDKVRFFGNGRQNKYMKRKFRS 209


>C3G585.1 C3G585_BACTU Transposase
          Length = 359

 Score = 63.9 bits (154), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 29/36 (80%)

Query: 78  ADFGLKVPAAVVTSEGKTRFFGNGRENKYMKRKFRS 113
            D GLKVPA  +T + K RFFGNGR+NKYMKRKFRS
Sbjct: 174 VDLGLKVPAVAITDDDKVRFFGNGRQNKYMKRKFRS 209


>C2VUT2.1 C2VUT2_BACCE Transposase
          Length = 359

 Score = 63.9 bits (154), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 29/36 (80%)

Query: 78  ADFGLKVPAAVVTSEGKTRFFGNGRENKYMKRKFRS 113
            D GLKVPA  +T + K RFFGNGR+NKYMKRKFRS
Sbjct: 174 VDLGLKVPAVAITDDDKVRFFGNGRQNKYMKRKFRS 209


>C2MMM8.1 C2MMM8_BACCE Transposase
          Length = 359

 Score = 63.5 bits (153), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 29/36 (80%)

Query: 78  ADFGLKVPAAVVTSEGKTRFFGNGRENKYMKRKFRS 113
            D GLKVPA  +T + K RFFGNGR+NKYMKRKFRS
Sbjct: 174 VDLGLKVPAVAITDDDKVRFFGNGRQNKYMKRKFRS 209


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.129    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 650,460,753
Number of extensions: 23312736
Number of successful extensions: 35058
Number of sequences better than 1.0e-05: 37
Number of HSP's gapped: 35058
Number of HSP's successfully gapped: 37
Length of query: 146
Length of database: 3,060,696,203
Length adjustment: 109
Effective length of query: 37
Effective length of database: 2,033,805,568
Effective search space: 75250806016
Effective search space used: 75250806016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)