BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0532.0006.p
         (212 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C2QC17.1 C2QC17_BACCE Rab                                              96   2e-18
C2PVZ8.1 C2PVZ8_BACCE Rab                                              96   2e-18
Q5K992.1 Q5K992_CRYNE Beta-1,3 glucan biosynthesis-related prote...    96   2e-18
Q55KB3.1 Q55KB3_CRYNE Putative uncharacterized protein                 96   2e-18
C2ZPP7.1 C2ZPP7_BACCE Surface protein, responsible for cell inte...    95   4e-18

>C2QC17.1 C2QC17_BACCE Rab
          Length = 510

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/128 (39%), Positives = 71/128 (55%), Gaps = 7/128 (5%)

Query: 43  GFPLPEEVEELYRIHNGQ-NHMYGIVFGLDFLSLTELCRKWNDWKELIDSXXXXXXXXXX 101
           G   P+E+  LY  HNG+     G+ FGL FLSL E+  +W  WK + D           
Sbjct: 38  GISFPDELRNLYLAHNGEVKSGPGLFFGLPFLSLDEVLDEWRVWKSIEDDAFFNFD---- 93

Query: 102 XXCTSAPPGAIQTVYANLRWIPLFYDGSGNAVGVDLDPGEQGSMGQIINFGRDEDNKLVL 161
               S P   I+  Y N  WIP+  D  GN +G+D+DPGE+G +GQ+INFGRDE+ K V+
Sbjct: 94  --AFSIPTECIKESYVNRNWIPISKDYGGNNIGIDVDPGEKGKVGQVINFGRDEEVKYVI 151

Query: 162 APNLAAFI 169
           A  ++  +
Sbjct: 152 ANRISDLL 159


>C2PVZ8.1 C2PVZ8_BACCE Rab
          Length = 537

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/128 (39%), Positives = 71/128 (55%), Gaps = 7/128 (5%)

Query: 43  GFPLPEEVEELYRIHNGQ-NHMYGIVFGLDFLSLTELCRKWNDWKELIDSXXXXXXXXXX 101
           G   P+E+  LY  HNG+     G+ FGL FLSL E+  +W  WK + +           
Sbjct: 65  GISFPDELRMLYLTHNGEVKSGPGLFFGLPFLSLDEVLNEWRVWKRIEEEEFLNFDSF-- 122

Query: 102 XXCTSAPPGAIQTVYANLRWIPLFYDGSGNAVGVDLDPGEQGSMGQIINFGRDEDNKLVL 161
               S     I+  Y N +WIP+  D  GN +G+D+DP E+G MGQ+INFGRDE+ K V+
Sbjct: 123 ----SIQAKCIKETYVNYKWIPISKDYGGNNIGIDVDPDEKGEMGQVINFGRDEEVKYVM 178

Query: 162 APNLAAFI 169
           A  ++ F+
Sbjct: 179 ANRISDFL 186


>Q5K992.1 Q5K992_CRYNE Beta-1,3 glucan biosynthesis-related protein, putative
          Length = 827

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/127 (43%), Positives = 67/127 (52%), Gaps = 8/127 (6%)

Query: 43  GFPLPEEVEELYRIHNGQNHMY--------GIVFGLDFLSLTELCRKWNDWKELIDSXXX 94
           G PLP  V E  ++ +GQ+           G+ FGL FL L E+ R+W  W+   D    
Sbjct: 134 GCPLPRSVRESIQVADGQDLETTGNISGSGGLFFGLYFLPLEEVMREWAFWRYAEDDPTV 193

Query: 95  XXXXXXXXXCTSAPPGAIQTVYANLRWIPLFYDGSGNAVGVDLDPGEQGSMGQIINFGRD 154
                      S PP  I+TVYA   WIPL  D +GN VGVDLDPG  G+ GQ+I FGRD
Sbjct: 194 GGNPAILATMASVPPQWIKTVYACKGWIPLLSDRTGNYVGVDLDPGANGAWGQVIVFGRD 253

Query: 155 EDNKLVL 161
            D K VL
Sbjct: 254 FDRKCVL 260


>Q55KB3.1 Q55KB3_CRYNE Putative uncharacterized protein
          Length = 825

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/127 (43%), Positives = 67/127 (52%), Gaps = 8/127 (6%)

Query: 43  GFPLPEEVEELYRIHNGQNHMY--------GIVFGLDFLSLTELCRKWNDWKELIDSXXX 94
           G PLP  V E  ++ +GQ+           G+ FGL FL L E+ R+W  W+   D    
Sbjct: 134 GCPLPRSVRESIQVADGQDLETTGNISGSGGLFFGLYFLPLEEVMREWAFWRYAEDDPTV 193

Query: 95  XXXXXXXXXCTSAPPGAIQTVYANLRWIPLFYDGSGNAVGVDLDPGEQGSMGQIINFGRD 154
                      S PP  I+TVYA   WIPL  D +GN VGVDLDPG  G+ GQ+I FGRD
Sbjct: 194 GGNPAILATMASVPPQWIKTVYACKGWIPLLSDRTGNYVGVDLDPGANGAWGQVIVFGRD 253

Query: 155 EDNKLVL 161
            D K VL
Sbjct: 254 FDRKCVL 260


>C2ZPP7.1 C2ZPP7_BACCE Surface protein, responsible for cell interaction
          Length = 537

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 50/124 (40%), Positives = 71/124 (57%), Gaps = 7/124 (5%)

Query: 47  PEEVEELYRIHNGQ-NHMYGIVFGLDFLSLTELCRKWNDWKELIDSXXXXXXXXXXXXCT 105
           P+E+  LY  HNG+     G+ FGL FLSL E+  +W  WK + +               
Sbjct: 69  PDELRMLYLTHNGEVKSGPGLFFGLPFLSLDEVLNEWRVWKRIEEEEFFNFD------AF 122

Query: 106 SAPPGAIQTVYANLRWIPLFYDGSGNAVGVDLDPGEQGSMGQIINFGRDEDNKLVLAPNL 165
           S P   I+  Y N +WIP+  D  GN +G+D+DP E+G MGQ+INFGRDE+ K V+A  +
Sbjct: 123 SIPAKCIKERYVNHKWIPISKDYGGNNIGIDVDPDEKGEMGQVINFGRDEEVKYVMANRI 182

Query: 166 AAFI 169
           + F+
Sbjct: 183 SDFL 186


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.322    0.140    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,117,846,646
Number of extensions: 39935595
Number of successful extensions: 60327
Number of sequences better than 1.0e-05: 91
Number of HSP's gapped: 60287
Number of HSP's successfully gapped: 91
Length of query: 212
Length of database: 3,060,696,203
Length adjustment: 130
Effective length of query: 82
Effective length of database: 1,835,964,253
Effective search space: 150549068746
Effective search space used: 150549068746
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)