BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0532.0004.p (413 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A9EN84.1 A9EN84_SORC5 Pectinacetylesterase, putative 123 3e-26 B9WVZ1.1 B9WVZ1_STRSU Putative uncharacterized protein 108 1e-21 Q0BZ23.1 Q0BZ23_HYPNA Putative lipoprotein 100 2e-19 C1XII3.1 C1XII3_MEIRU Putative uncharacterized protein 99 1e-18 O28594.1 O28594_ARCFU VtpJ-therm, putative 86 7e-15 >A9EN84.1 A9EN84_SORC5 Pectinacetylesterase, putative Length = 365 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 94/357 (26%), Positives = 143/357 (40%), Gaps = 48/357 (13%) Query: 46 PHKWNRVELGGNVRSSDGSEYYLLTKKGSSRNWIIFFSGGGVSWDAPSAASPMKITNILT 105 P W+ +E GG S G + + G+ I+ F GGG WDA + + + Sbjct: 45 PSGWSSIEPGGETTCSRGDPFKYFVRPGTVNRLIVEFRGGGACWDATTCSFAGALFQETV 104 Query: 106 GKDPGNYFANLPFYMLTLLDGIM-ADRPENPFREWNVAYIPYSTGDFHIGNRIAKYPEKD 164 G+D L GI + P NPF++W+ YIPY TGD H G+ +A Y E Sbjct: 105 GED-------------ALTTGIYDHENPNNPFKDWHHVYIPYCTGDVHWGDNVATYGEGS 151 Query: 165 GSSLIVNYNGRNNVQSSLDWIYEHAVQPDKLLIXXXXXXXXXXXXXXPEIAGHYKDAEIY 224 ++ + + G NV+++L WIYE+ P+K+ + + HYK A + Sbjct: 152 -QAVTIQHKGAVNVRAALGWIYENVPAPEKIFVTGCSAGAYGAILWSAHLREHYKSASVI 210 Query: 225 QYSDSSFLYSDKWPGIVDNEWHAD----FKKNFGYPA------AADLIGAAVRGNSRQMA 274 +++DS GI+ + D +K YP A+L +V Sbjct: 211 EFADSG-------AGIITETFFRDSLPSWKPEGAYPTWIPGLDPAELARLSVLYEKIGAH 263 Query: 275 DGTVFLQSY-SLYDEILTHFENKINDKAPVSSQSDAAAWSRRMTSAVRELAETLPNYVYF 333 + L Y + YDE F N V A AWS M + + E+ + PN+ F Sbjct: 264 YPDMRLSQYNTAYDEDQIFFFN-------VMGGGGAQAWSDAMRAEIAEIEASTPNFRSF 316 Query: 334 VTDDGLDAKKGTTSHTFATRDVLFKTEEDGVRLADWLDDIINKRQKYSVGGKLLSAP 390 + T+H R + E G RL WLD + N SV +P Sbjct: 317 LA--------AGTAHCILWRPEFYTLESRGARLVQWLDGLANGAPPPSVACDACGSP 365 >B9WVZ1.1 B9WVZ1_STRSU Putative uncharacterized protein Length = 372 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 88/346 (25%), Positives = 154/346 (44%), Gaps = 17/346 (4%) Query: 45 KPHKWNRVELGGNVRSSDGSEYYLLTKKGSSRNWI-IFFSGGGVSWDAPSAASPMKITNI 103 + ++W R+ G V S G++ + L + G +N + ++F GGGVS + +A+ + Sbjct: 40 QVNEWYRLSPEG-VVDSQGNQAHGLIRTGKEKNKVMVYFFGGGVSINEETASGGTRYFAT 98 Query: 104 LTGKDPGNYFANLPFYMLTLLDGIMADRPENPFREWNVAYIPYSTGDFHIGNRIAKYPEK 163 TG +Y A GI + + +NPF++W + +PY TGDFH G + Y + Sbjct: 99 TTGHQ--DYVATW---------GIGSPQEDNPFKDWTMIVLPYGTGDFHAGTQNFSYVDD 147 Query: 164 DGSSLIVNYNGRNNVQSSLDWIYEHAVQPDKLLIXXXXXXXXXXXXXXPEIAGHYKDAE- 222 +G +V++ G +N+ S L H PD LL+ ++ H+ A+ Sbjct: 148 NGKEQVVHHQGYSNLMSILAAAKPHVGNPDTLLVTGFSAGGFATSLLADDVISHFPTAKN 207 Query: 223 IYQYSDSSFLYSDKWPGIVDNEWHADFKKNFGYPAAADLIGAAVRGNSRQMADGTVFLQS 282 + DSSFL D W I +N W + + ++ + V + ++ D L Sbjct: 208 VTVAVDSSFLRHDNWKSIAENVWKTPTSISDRLHSDNIVLDSLVALHEKR-GDSVKILFD 266 Query: 283 YSLYDEILTHFENKIND-KAPVSSQSDAAAWSRRMTSAVRELAETLPNYVYFVTDDGLDA 341 S D IL ++ I+ K +++ + + + + ++EL + F+ + G D Sbjct: 267 ISYRDGILQQYQAYIDQGKLADATEESSDHFQKELKKMIQELQSKIDGVGIFIWNYGQDE 326 Query: 342 KKGTTSHTFATRDVLFKTEEDGVRLADWLDDIINKRQKYSVGGKLL 387 K T HT F +A+WLDD +N Q S G +LL Sbjct: 327 KTTATQHTTINFSTFFTPMSKDKSVAEWLDDAVNG-QVNSYGLELL 371 >Q0BZ23.1 Q0BZ23_HYPNA Putative lipoprotein Length = 369 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 88/357 (24%), Positives = 146/357 (40%), Gaps = 39/357 (10%) Query: 38 IAEYADTKPH----KWNRVELGGNVRSSDGSEYYLLTKKGSSRNWIIFFSGGGVSWDAPS 93 I+ DT P +W +E GG+ + G+ + + G ++F +GGG W Sbjct: 31 ISAQPDTAPAIPATEWAMIEPGGDTLCATGTPFRFHVRGGDMSRVMLFLNGGGACWSG-- 88 Query: 94 AASPMKITNILTGKDPGNYFANLPFYMLTLLDGIM-ADRPENPFREWNVAYIPYSTGDFH 152 ++ T P FA++ LL+G+ + NPF W ++PY TGD H Sbjct: 89 -----DHCDVATEPTPYTPFADMASNDPELLEGVFDSANAANPFAGWTQLFVPYCTGDSH 143 Query: 153 IGNRIAKYPEKDGSSLIVNYNGRNNVQSSLDWIYEHAVQPDKLLIXXXXXXXXXXXXXXP 212 +G++ Y G ++ +++ G+ NVQ++LDW+Y + ++ + Sbjct: 144 LGSKDVVYQTSAGEAVTIHHRGKANVQAALDWLYANRPAAQRVFVTGGSAGGIGSPYYAG 203 Query: 213 EIAGHYKDAEIYQYSDSSFLYSDKWPGIVDNEWHADFKKNFGYP--AAADLIGAAVRGNS 270 +A Y +AEI Q +D S Y V W A F+ +P +A D A+ Sbjct: 204 LVADQYPEAEIVQLADGSGGYRAAGIAEVLETWGA-FEGTPDWPEFSALDRAAASTEDFF 262 Query: 271 RQMADGTVFLQSY---SLYDEILTHFENKINDKAPVSSQSDAAAWSRRMTSAVR-ELAET 326 R A +Q ++ D++ F + PV R + +A +LA Sbjct: 263 RVTAARHPEMQMARFDNVDDQVQQDFLGLLGTGKPV----------RELLAANNADLARD 312 Query: 327 LPNYVYF-VTDDGLDAKKGTTSHTFATRDVLFKTEEDGVRLADWLDDIINKRQKYSV 382 +P F DG HT D + + GVRL+DW+ D+ R SV Sbjct: 313 IPGIRTFSAPGDG---------HTALRFDHFYTEQTAGVRLSDWVRDLAEGRAGSSV 360 >C1XII3.1 C1XII3_MEIRU Putative uncharacterized protein Length = 332 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 79/347 (22%), Positives = 127/347 (36%), Gaps = 53/347 (15%) Query: 46 PHKWNRVELGGNVRSSDGSEYYLLTKKGSSRNWIIFFSGGGVSWDAPSAASPMKITNILT 105 P W + GG SDGS + G++ I+ F GGG WDA + ++ Sbjct: 13 PAGWQEIRPGGAAVCSDGSPWRFYVAPGAADKVIVNFQGGGACWDAATCNPQSRL----- 67 Query: 106 GKDPGNYFANLPFYMLTLLDGIM-ADRPENPFREWNVAYIPYSTGDFHIGNRIAKYPEKD 164 Y L L GI + PENPFR+W ++PY T D H GN A+Y Sbjct: 68 ------YTTRLQLQDLQAGQGIFNRNNPENPFRDWTHVFVPYCTADLHWGNNTARY---- 117 Query: 165 GSSLIVNYNGRNNVQSSLDWIYEHAVQPDKLLIXXXXXXXXXXXXXXPEIAGHYKDAEIY 224 L + + G N + ++ W++ + P +L+ P Y +A++ Sbjct: 118 -GDLTIQHKGAVNARQAVLWVFNNIPNPQNILVTGCSAGGYGSIMWAPYFMRRYPNAQVT 176 Query: 225 QYSDSSF---------LYSDKW------PGIVDNEWHADFKKNFGYPAAADLIGAAVRGN 269 Q D++ + S W PG + A N DL R Sbjct: 177 QLGDAALGVAPASFFPVASRAWGIQSALPGWIGGLEPAQLGSN-------DLYQIFARAY 229 Query: 270 SRQMADGTVFLQSYSLYDEILTHFENKINDKAPVSSQSDAAAWSRRMTSAVRELAETLPN 329 + F Q +L DE+ F + I + P + A W + + + + + PN Sbjct: 230 PNRS-----FAQYSTLADEVQIFFYSLIVGQ-PRPTPEIAQQWVQGALANLASIKQAAPN 283 Query: 330 YVYFVTDDGLDAKKGTTSHTFATRDVLFKTEEDGVRLADWLDDIINK 376 + ++ T H R + T VR DWL +++ Sbjct: 284 FYSYLAPG--------TQHCIIGRPEFYSTRVGDVRFVDWLSRLVSN 322 >O28594.1 O28594_ARCFU VtpJ-therm, putative Length = 391 Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 50/148 (33%), Positives = 77/148 (52%), Gaps = 9/148 (6%) Query: 49 WNRVELGGNVRSSDGSEYYLLTKKGSSRNWIIFFSGGGVSWDAPSAASPMKITNILTGK- 107 W +V L + G + +++ +KGSS N +IFF GGG D PM T++ + K Sbjct: 58 WVKVPLPKPCVNGMGKDTFIMVRKGSSNNLLIFFEGGGACADY-ETCKPMLCTDLKSCKP 116 Query: 108 --DPGNYFA---NLPFYMLTLLDGIM-ADRPENPFREWNVAYIPYSTGDFHIGNRIAKYP 161 G+ A N F L GI + ENPFR+W + ++PY+TGD H+GNR+ +Y Sbjct: 117 LLGIGSVVALESNFCFLKLYYRGGIFDVKKAENPFRDWTIVFVPYNTGDLHMGNRVVRYF 176 Query: 162 EKDGSSLIVNYNGRNNVQSSLDWIYEHA 189 + DG + + G N ++ WI E+ Sbjct: 177 D-DGKEKTIYHVGYVNAIVAMRWIKENG 203 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.133 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,558,240,722 Number of extensions: 109823445 Number of successful extensions: 175396 Number of sequences better than 1.0e-05: 53 Number of HSP's gapped: 175354 Number of HSP's successfully gapped: 53 Length of query: 413 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 275 Effective length of database: 1,760,596,133 Effective search space: 484163936575 Effective search space used: 484163936575 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 132 (55.5 bits)