BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0532.0002.p (294 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B8I975.1 B8I975_CLOCE Beta-lactamase 187 1e-45 C2XEI0.1 C2XEI0_BACCE Cyclic peptide transporter 185 3e-45 C0JRE8.1 C0JRE8_BACCE ZmaM 185 4e-45 C3H368.1 C3H368_BACTU Cyclic peptide transporter 184 6e-45 C3FUB2.1 C3FUB2_BACTB Cyclic peptide transporter 184 7e-45 >B8I975.1 B8I975_CLOCE Beta-lactamase Length = 514 Score = 187 bits (474), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 95/244 (38%), Positives = 152/244 (62%), Gaps = 5/244 (2%) Query: 40 GKYDNEQNMVETIMDKTATPGVAIVSSKQGKAEFK-VYGYADVDQKKQVTEESLFELGST 98 GK D +++ MDK+ G+++V KA +K YGYA+++ KK VTE++LFELGST Sbjct: 43 GKIDE---LIQKQMDKSKIQGLSLVIVSGDKAVYKKCYGYAEIETKKPVTEDTLFELGST 99 Query: 99 TKAFTALAIILLQEEGALAYSDYISDYLPWFAPTYKGEKTKISINQLLVHTSGIPSWSIR 158 +KAFTAL I L+++G + D +S Y+PW YKG+ +++N L HTSG+ ++ Sbjct: 100 SKAFTALGIYKLEDKGLINLDDSVSKYIPWLKLNYKGKSADLTLNHFLHHTSGVSFLTLE 159 Query: 159 LIPEGSTEEMLGTTIHKISGITLDTYPGTEHQYATVNYDILAMIIEQVTGISYQDYVTQH 218 I + E L T+ + I LDT PG + QYAT+NYD+L ++IE+VTG S++DY+ Sbjct: 160 DIKPSTAENALEQTVRTLQEIELDTPPGKQFQYATINYDVLGLVIEKVTGKSFEDYMQDE 219 Query: 219 ILVPLGMTDSYFSSGQEKKPDQLTQGYRVFFGKSLAYNAPRYYGNIAAGYXXXXGNEYKG 278 +L+P G+ ++ F++ + ++ GY+V + + YNAP + GNI AGY N+ + Sbjct: 220 VLLPCGLNNT-FTTRNQAVESRMAAGYKVSLMRPVKYNAPVFLGNIPAGYFITNINDVQR 278 Query: 279 FGAL 282 + +L Sbjct: 279 WLSL 282 >C2XEI0.1 C2XEI0_BACCE Cyclic peptide transporter Length = 1005 Score = 185 bits (470), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 98/232 (42%), Positives = 148/232 (63%), Gaps = 4/232 (1%) Query: 46 QNMVETIMDKTATPGVAIVSSKQGKAEFKV-YGYADVDQKKQVTEESLFELGSTTKAFTA 104 Q +E + + PG+++V K + +K YGYAD+D K+QVT E+LFELGST+KAFTA Sbjct: 15 QKHIEEQISQAGIPGLSVVIVKGNETIYKKNYGYADIDNKRQVTNETLFELGSTSKAFTA 74 Query: 105 LAIILLQEEGALAYSDYISDYLPWFAPTYKGEKTKISINQLLVHTSGIPSWSIRLIPEGS 164 LA++ L++EG + SD ++ Y+ WF YKG+ +I++ LL HTSGIP +I IP + Sbjct: 75 LAVLQLEKEGKIKLSDSLTKYVSWFEMEYKGKPYEITLYDLLHHTSGIPEKAIGYIPITN 134 Query: 165 TEEMLGTTIHKISGITLDTYPGTEHQYATVNYDILAMIIEQVTGISYQDYVTQHILVPLG 224 ++ + TI + I L+ PG+ +Y+TVNYD+L ++IE+ T S++ YV H+L L Sbjct: 135 GKDSIEKTIRNVMPIGLNREPGSSFEYSTVNYDLLGLVIEKATNQSFERYVQDHVLSKLD 194 Query: 225 MTDSYFSSGQEKKP-DQLTQGYRVFFGKSLAYNAPRYYGNIAAGYXXXXGNE 275 + +Y +G+E P D + QGY+ F +SL Y+AP Y GN AGY N+ Sbjct: 195 LLSTY--AGREMAPLDNMAQGYKRNFLQSLPYDAPNYRGNTPAGYFISNIND 244 >C0JRE8.1 C0JRE8_BACCE ZmaM Length = 1027 Score = 185 bits (470), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 98/232 (42%), Positives = 148/232 (63%), Gaps = 4/232 (1%) Query: 46 QNMVETIMDKTATPGVAIVSSKQGKAEFKV-YGYADVDQKKQVTEESLFELGSTTKAFTA 104 Q +E + + PG+++V K + +K YGYAD+D K+QVT E+LFELGST+KAFTA Sbjct: 37 QKHIEEQISQAGIPGLSVVIVKGNETIYKKNYGYADIDNKRQVTNETLFELGSTSKAFTA 96 Query: 105 LAIILLQEEGALAYSDYISDYLPWFAPTYKGEKTKISINQLLVHTSGIPSWSIRLIPEGS 164 LA++ L++EG + SD ++ Y+ WF YKG+ +I++ LL HTSGIP +I IP + Sbjct: 97 LAVLQLEKEGKIKLSDSLTKYVSWFEMEYKGKPYEITLYDLLHHTSGIPEKAIGYIPITN 156 Query: 165 TEEMLGTTIHKISGITLDTYPGTEHQYATVNYDILAMIIEQVTGISYQDYVTQHILVPLG 224 ++ + TI + I L+ PG+ +Y+TVNYD+L ++IE+ T S++ YV H+L L Sbjct: 157 GKDSIEKTIRNVMPIGLNREPGSSFEYSTVNYDLLGLVIEKATNQSFERYVQDHVLSKLD 216 Query: 225 MTDSYFSSGQEKKP-DQLTQGYRVFFGKSLAYNAPRYYGNIAAGYXXXXGNE 275 + +Y +G+E P D + QGY+ F +SL Y+AP Y GN AGY N+ Sbjct: 217 LLSTY--AGREMAPLDNMAQGYKRNFLQSLPYDAPNYRGNTPAGYFISNIND 266 >C3H368.1 C3H368_BACTU Cyclic peptide transporter Length = 1005 Score = 184 bits (468), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 98/232 (42%), Positives = 148/232 (63%), Gaps = 4/232 (1%) Query: 46 QNMVETIMDKTATPGVAIVSSKQGKAEFKV-YGYADVDQKKQVTEESLFELGSTTKAFTA 104 Q +E + + PG+++V K + +K YGYAD D+K+QVT E+LFELGST+KAFTA Sbjct: 15 QKHIEEQISQAGIPGLSVVIVKGNETIYKKNYGYADTDKKRQVTNETLFELGSTSKAFTA 74 Query: 105 LAIILLQEEGALAYSDYISDYLPWFAPTYKGEKTKISINQLLVHTSGIPSWSIRLIPEGS 164 LA++ L++EG + SD ++ Y+ WF YKG+ +I++ LL HTSGIP +I IP + Sbjct: 75 LAVLQLEKEGKIKLSDSLTKYVSWFEMEYKGKPYEITLYDLLHHTSGIPEKAIGYIPITN 134 Query: 165 TEEMLGTTIHKISGITLDTYPGTEHQYATVNYDILAMIIEQVTGISYQDYVTQHILVPLG 224 ++ + TI + I L+ PG+ +Y+TVNYD+L ++IE+ T S++ YV H+L L Sbjct: 135 GKDSIEKTIRNVMPIGLNREPGSSFEYSTVNYDLLGLVIEKATNQSFERYVQDHVLSKLD 194 Query: 225 MTDSYFSSGQEKKP-DQLTQGYRVFFGKSLAYNAPRYYGNIAAGYXXXXGNE 275 + +Y +G+E P D + QGY+ F +SL Y+AP Y GN AGY N+ Sbjct: 195 LLSTY--AGREMAPLDNMAQGYKRNFLQSLPYDAPNYRGNTPAGYFISNIND 244 >C3FUB2.1 C3FUB2_BACTB Cyclic peptide transporter Length = 1005 Score = 184 bits (468), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 98/232 (42%), Positives = 148/232 (63%), Gaps = 4/232 (1%) Query: 46 QNMVETIMDKTATPGVAIVSSKQGKAEFKV-YGYADVDQKKQVTEESLFELGSTTKAFTA 104 Q +E + + PG+++V K + +K YGYAD D+K+QVT E+LFELGST+KAFTA Sbjct: 15 QKHIEEQISQAGIPGLSVVIVKGNETIYKKNYGYADTDKKRQVTNETLFELGSTSKAFTA 74 Query: 105 LAIILLQEEGALAYSDYISDYLPWFAPTYKGEKTKISINQLLVHTSGIPSWSIRLIPEGS 164 LA++ L++EG + SD ++ Y+ WF YKG+ +I++ LL HTSGIP +I IP + Sbjct: 75 LAVLQLEKEGEIKLSDSLTKYVSWFEMEYKGKPYEITLYDLLHHTSGIPEKAIGYIPITN 134 Query: 165 TEEMLGTTIHKISGITLDTYPGTEHQYATVNYDILAMIIEQVTGISYQDYVTQHILVPLG 224 ++ + TI + I L+ PG+ +Y+TVNYD+L ++IE+ T S++ YV H+L L Sbjct: 135 GKDSIEKTIRNVMPIGLNREPGSSFEYSTVNYDLLGLVIEKATNQSFERYVQDHVLSKLD 194 Query: 225 MTDSYFSSGQEKKP-DQLTQGYRVFFGKSLAYNAPRYYGNIAAGYXXXXGNE 275 + +Y +G+E P D + QGY+ F +SL Y+AP Y GN AGY N+ Sbjct: 195 LLSTY--AGREMAPLDNMAQGYKRNFLQSLPYDAPNYRGNTPAGYFISNIND 244 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.135 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,647,999,629 Number of extensions: 67117810 Number of successful extensions: 141697 Number of sequences better than 1.0e-05: 3254 Number of HSP's gapped: 138770 Number of HSP's successfully gapped: 3263 Length of query: 294 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 160 Effective length of database: 1,798,280,193 Effective search space: 287724830880 Effective search space used: 287724830880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)