BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0532.0001.p
         (108 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C2Y2R4.1 C2Y2R4_BACCE Beta-lactamase                                   59   1e-07
A3IAE2.1 A3IAE2_9BACI Beta-lactamase                                   58   3e-07
B1IFB4.1 B1IFB4_CLOBK Beta-lactamase                                   57   7e-07
C3DI49.1 C3DI49_BACTS Beta-lactamase                                   56   8e-07
C3FX92.1 C3FX92_BACTU Beta-lactamase                                   56   9e-07

>C2Y2R4.1 C2Y2R4_BACCE Beta-lactamase
          Length = 475

 Score = 59.3 bits (142), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 57/96 (59%), Gaps = 4/96 (4%)

Query: 1   MGI-SDVPDNLKNAIQQSHEVDIRAAGYEAKNQYYSFGWSNDRVNRVISHSGSNPNYSSQ 59
           MGI  D+P+     I++SH  D+  +     + YY+ GWS +    +I H+G NPN+ ++
Sbjct: 276 MGIVQDIPEIFHTVIEKSHRGDMSVSA--VNDMYYAAGWSVNADQTIIEHTGGNPNFRTE 333

Query: 60  VIIDLERQEAVFVLANLNSTAPSLIAKNKYEQMNGN 95
           V+I L  + AV +L+N  +T  +L+ K K + ++GN
Sbjct: 334 VVILLNERTAVCLLSNGANTNINLVLKVK-DILDGN 368


>A3IAE2.1 A3IAE2_9BACI Beta-lactamase
          Length = 475

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 57/96 (59%), Gaps = 4/96 (4%)

Query: 1   MGI-SDVPDNLKNAIQQSHEVDIRAAGYEAKNQYYSFGWSNDRVNRVISHSGSNPNYSSQ 59
           MGI  ++P+     I++SH+ D   +     + YY+ GWS +    +I H+G NPN+ +Q
Sbjct: 276 MGIVQNIPEIFHRVIEKSHKGDTSVS--SVNDMYYAAGWSVNADQTIIEHTGGNPNFRTQ 333

Query: 60  VIIDLERQEAVFVLANLNSTAPSLIAKNKYEQMNGN 95
           V+I L  + A+ +L+N  +T  +L+ K K + ++GN
Sbjct: 334 VVIQLNERRAICLLSNGANTNINLVLKVK-DILDGN 368


>B1IFB4.1 B1IFB4_CLOBK Beta-lactamase
          Length = 482

 Score = 56.6 bits (135), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 4/96 (4%)

Query: 1   MGI-SDVPDNLKNAIQQSHEVDIRAAGYEAKNQYYSFGWSNDRVNRVISHSGSNPNYSSQ 59
           MGI  D+P+     I++SH  D+     +    +Y+ GWS +    +I HSG NPN++++
Sbjct: 276 MGIVQDIPEIFHEIIEKSHHGDMSVP--DVNGMFYAVGWSVNSEQTIIEHSGGNPNFATE 333

Query: 60  VIIDLERQEAVFVLANLNSTAPSLIAKNKYEQMNGN 95
           V I    + AV +L N  +T  +L+ K K E ++GN
Sbjct: 334 VAILPNERTAVCLLTNGTNTNRNLVLKIK-EILDGN 368


>C3DI49.1 C3DI49_BACTS Beta-lactamase
          Length = 482

 Score = 56.2 bits (134), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 4/96 (4%)

Query: 1   MGI-SDVPDNLKNAIQQSHEVDIRAAGYEAKNQYYSFGWSNDRVNRVISHSGSNPNYSSQ 59
           MGI  D+P+    AI++SH  D+  +     + YY+ GWS +     I H+G NPN+S++
Sbjct: 276 MGIVQDIPEIFHRAIEKSHRGDMSVSA--VNDMYYAAGWSVNAEQTFIEHTGGNPNFSTE 333

Query: 60  VIIDLERQEAVFVLANLNSTAPSLIAKNKYEQMNGN 95
           V I    + A+ +L+N  +T  +L+ K K   +NGN
Sbjct: 334 VAILPNERTAICLLSNGANTNINLVLKVK-NILNGN 368


>C3FX92.1 C3FX92_BACTU Beta-lactamase
          Length = 482

 Score = 56.2 bits (134), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 4/96 (4%)

Query: 1   MGI-SDVPDNLKNAIQQSHEVDIRAAGYEAKNQYYSFGWSNDRVNRVISHSGSNPNYSSQ 59
           MGI  D+P+    AI++SH  D+  +     + YY+ GWS +     I H+G NPN+S++
Sbjct: 276 MGIVQDIPEIFHRAIEKSHRGDMSVSA--VNDMYYAAGWSVNAEQTFIEHTGGNPNFSTE 333

Query: 60  VIIDLERQEAVFVLANLNSTAPSLIAKNKYEQMNGN 95
           V I    + A+ +L+N  +T  +L+ K K   +NGN
Sbjct: 334 VAILPNERTAICLLSNGANTNINLVLKVK-NILNGN 368


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.312    0.126    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 585,253,575
Number of extensions: 19647753
Number of successful extensions: 36561
Number of sequences better than 1.0e-05: 38
Number of HSP's gapped: 36558
Number of HSP's successfully gapped: 38
Length of query: 108
Length of database: 3,060,696,203
Length adjustment: 76
Effective length of query: 32
Effective length of database: 2,344,699,063
Effective search space: 75030370016
Effective search space used: 75030370016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 125 (52.8 bits)