BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0531.0017.p (143 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q2BCM8.1 Q2BCM8_9BACI Putative uncharacterized protein 152 8e-36 B3K819.1 B3K819_9BACI Putative uncharacterized protein 148 2e-34 B1DD02.1 B1DD02_9BACL Putative uncharacterized protein 147 3e-34 A6CMQ2.1 A6CMQ2_9BACI Putative uncharacterized protein 147 4e-34 Q8EMB9.1 Q8EMB9_OCEIH Hypothetical conserved protein 146 5e-34 >Q2BCM8.1 Q2BCM8_9BACI Putative uncharacterized protein Length = 146 Score = 152 bits (384), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 77/141 (54%), Positives = 96/141 (68%), Gaps = 3/141 (2%) Query: 2 ILQLITSFIAAATFCILFNAPVRALVQCGFAGMVGWMLYLQLDEKW-DXXXXXXXXXXXX 60 I QL TSF+A+A F ILFNAP ++L++CG G +GW++Y ++ D Sbjct: 4 IEQLATSFVASAAFGILFNAPKKSLIKCGTVGTIGWLVYFWMESSGVDAVGATISAAFFV 63 Query: 61 XXISQFFARSFKMPVIIFSVGGIIPLVPGGLAYDAMRKFVENDNNLAIQFAVQALLLSGA 120 SQFFAR++K P+IIFSV GIIPLVPGGLAYDAMR FVEND N AI A +A ++SGA Sbjct: 64 AFTSQFFARAYKTPIIIFSVAGIIPLVPGGLAYDAMRNFVENDYNTAISLAARAFMISGA 123 Query: 121 IATGLVLSEVLGQMFRRKNGR 141 IA GLV SEV+ Q+ KN R Sbjct: 124 IAIGLVFSEVINQII--KNAR 142 >B3K819.1 B3K819_9BACI Putative uncharacterized protein Length = 148 Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 72/137 (52%), Positives = 96/137 (70%), Gaps = 1/137 (0%) Query: 2 ILQLITSFIAAATFCILFNAPVRALVQCGFAGMVGWMLYLQL-DEKWDXXXXXXXXXXXX 60 I QLITSF+A+A F I+FN P +AL+QCGFAGMVGW+LY+ L D + + Sbjct: 7 IQQLITSFVASAAFGIIFNVPKKALLQCGFAGMVGWLLYIMLQDMRVEPVTATVVAAFCV 66 Query: 61 XXISQFFARSFKMPVIIFSVGGIIPLVPGGLAYDAMRKFVENDNNLAIQFAVQALLLSGA 120 IS FFA+ +K P+I+FSV GIIPLVPGG+AY+A+R +N + A+Q QA ++SGA Sbjct: 67 TMISHFFAKKYKTPIIVFSVSGIIPLVPGGVAYNALRHVAQNQFDQAVQLGAQAFMISGA 126 Query: 121 IATGLVLSEVLGQMFRR 137 IA GL+LSEV Q+ R+ Sbjct: 127 IALGLLLSEVTNQVIRK 143 >B1DD02.1 B1DD02_9BACL Putative uncharacterized protein Length = 147 Score = 147 bits (372), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 75/137 (54%), Positives = 93/137 (67%), Gaps = 1/137 (0%) Query: 2 ILQLITSFIAAATFCILFNAPVRALVQCGFAGMVGWMLYLQLDEK-WDXXXXXXXXXXXX 60 I Q ITSFIA+A F ++FNAP + L QCG GMVGW+LY E + Sbjct: 7 IEQAITSFIASAAFGLIFNAPRQMLPQCGVVGMVGWLLYRSCAEMGLETIPATLIAVIIV 66 Query: 61 XXISQFFARSFKMPVIIFSVGGIIPLVPGGLAYDAMRKFVENDNNLAIQFAVQALLLSGA 120 ISQ FA+ +K PVI+FSV GIIPLVPGG+AYDAMR+ VEND ++A+Q V+A ++SG Sbjct: 67 AVISQLFAKLYKTPVIVFSVAGIIPLVPGGIAYDAMRRVVENDYDVAVQLGVKAFMISGT 126 Query: 121 IATGLVLSEVLGQMFRR 137 IA GLVLSEV+ Q RR Sbjct: 127 IAIGLVLSEVVNQTIRR 143 >A6CMQ2.1 A6CMQ2_9BACI Putative uncharacterized protein Length = 148 Score = 147 bits (370), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 70/137 (51%), Positives = 93/137 (67%), Gaps = 1/137 (0%) Query: 4 QLITSFIAAATFCILFNAPVRALVQCGFAGMVGWMLYLQLDEK-WDXXXXXXXXXXXXXX 62 Q ITSFIA+A F I+FNAP +LV+CG GM+GW++Y + K D Sbjct: 6 QSITSFIASAAFGIIFNAPRESLVKCGIVGMIGWVIYFVMTVKGMDIVLATVTASFIIAV 65 Query: 63 ISQFFARSFKMPVIIFSVGGIIPLVPGGLAYDAMRKFVENDNNLAIQFAVQALLLSGAIA 122 +SQ +++ +K PVIIFSV GIIPLVPGG+AYDAMR FV+ND N AI A +A ++SG+IA Sbjct: 66 LSQVYSKIYKTPVIIFSVAGIIPLVPGGMAYDAMRNFVQNDYNAAISLAAKAFMISGSIA 125 Query: 123 TGLVLSEVLGQMFRRKN 139 GL+ SEV+ Q+ R + Sbjct: 126 IGLIFSEVINQVIRNRK 142 >Q8EMB9.1 Q8EMB9_OCEIH Hypothetical conserved protein Length = 145 Score = 146 bits (369), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 73/138 (52%), Positives = 94/138 (68%), Gaps = 1/138 (0%) Query: 1 MILQLITSFIAAATFCILFNAPVRALVQCGFAGMVGWMLYLQLDEK-WDXXXXXXXXXXX 59 MI Q++ SFIAAA F ILFNAP AL+QCG GM+GW+LY L ++ D Sbjct: 1 MITQIVMSFIAAAGFGILFNAPRNALIQCGTVGMLGWILYYSLVQQGMDVVPATTFAAML 60 Query: 60 XXXISQFFARSFKMPVIIFSVGGIIPLVPGGLAYDAMRKFVENDNNLAIQFAVQALLLSG 119 +S AR F+ P+I+F+V GIIPLVPGG+AY+AMR FVEND N AIQ + Q +LL+G Sbjct: 61 VAILSHLCARFFQKPIIVFTVSGIIPLVPGGIAYNAMRHFVENDYNTAIQLSTQVMLLAG 120 Query: 120 AIATGLVLSEVLGQMFRR 137 IA GL+ SEVL Q+ ++ Sbjct: 121 GIAIGLMFSEVLNQILKK 138 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.331 0.143 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 699,290,911 Number of extensions: 22278430 Number of successful extensions: 72758 Number of sequences better than 1.0e-05: 288 Number of HSP's gapped: 72618 Number of HSP's successfully gapped: 288 Length of query: 143 Length of database: 3,060,696,203 Length adjustment: 106 Effective length of query: 37 Effective length of database: 2,062,068,613 Effective search space: 76296538681 Effective search space used: 76296538681 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 126 (53.1 bits)