BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0531.0015.p (196 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KBB6.1 B3KBB6_9BACI Putative uncharacterized protein 158 2e-37 B1DHT0.1 B1DHT0_9BACL Putative uncharacterized protein 154 4e-36 Q2BAS0.1 Q2BAS0_9BACI Putative uncharacterized protein 99 2e-19 Q5KZT5.1 Q5KZT5_GEOKA Hypothetical conserved protein 96 1e-18 C3J6G3.1 C3J6G3_9BACI Putative uncharacterized protein 96 1e-18 >B3KBB6.1 B3KBB6_9BACI Putative uncharacterized protein Length = 200 Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 88/193 (45%), Positives = 120/193 (62%) Query: 4 MNAFVKYAVILLAGLLIATGTNFFLVPYKXXXXXXXXXXXXXXXXXXAKIGLAIIMCSAP 63 M +F K+ +I++ LIA GTNFFLVP+K IG II+CS P Sbjct: 1 MLSFRKHVIIVIGSFLIAMGTNFFLVPHKVLDGGVIGIALIANYVFDLHIGFVIILCSIP 60 Query: 64 VFLLAWLKERDIFYSSVLGLVISSFMIELIGPLQYYFLYYVELGSVSSAIIXXXXXXXXX 123 +F+ AW+ R+IFY+S+ G++ISSF+I+L+ PLQ FL + + SA I Sbjct: 61 MFIAAWMLNREIFYNSLSGMLISSFVIDLLSPLQTDFLRFFAPHVIISAPIGGALIGAGL 120 Query: 124 XXXXXXXASTGGTDLLAKFIKRYIPLNLGVIIFLTDALIIGAGGLLISKETFFHSILTIL 183 ASTGGTDLLA F+ RY+PLN+GVII L DA+IIG GG+L+S TF +SILTI+ Sbjct: 121 GLMLRNDASTGGTDLLAHFLARYLPLNVGVIILLMDAVIIGFGGVLLSGSTFVYSILTIV 180 Query: 184 SGGVATGLCTLEK 196 +GG TG+ T ++ Sbjct: 181 AGGFTTGMITQKR 193 >B1DHT0.1 B1DHT0_9BACL Putative uncharacterized protein Length = 204 Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 77/190 (40%), Positives = 117/190 (61%) Query: 6 AFVKYAVILLAGLLIATGTNFFLVPYKXXXXXXXXXXXXXXXXXXAKIGLAIIMCSAPVF 65 ++ ++A I+L LLI+ G NFFLVP ++GL +++CS P+F Sbjct: 5 SWRRWAAIILGSLLISVGINFFLVPLMILDGGLIGIALIVNYLLHIQVGLTMLLCSIPIF 64 Query: 66 LLAWLKERDIFYSSVLGLVISSFMIELIGPLQYYFLYYVELGSVSSAIIXXXXXXXXXXX 125 L W + R + Y S+ GL++SS++I+L+ P +++FLYY+E + A++ Sbjct: 65 ALVWFQSRSMIYQSLNGLLLSSYVIDLLSPYRFHFLYYIEWTPFTRAVLGGFCIGTGLGI 124 Query: 126 XXXXXASTGGTDLLAKFIKRYIPLNLGVIIFLTDALIIGAGGLLISKETFFHSILTILSG 185 STGGTDLLA F+ RY+PLN+GVIIFLTD +IIG G +L+ ++TF S++T+ +G Sbjct: 125 MLRNGTSTGGTDLLAHFLSRYVPLNVGVIIFLTDFIIIGTGAVLLPEDTFLLSLITVAAG 184 Query: 186 GVATGLCTLE 195 GVAT LCT Sbjct: 185 GVATSLCTWN 194 >Q2BAS0.1 Q2BAS0_9BACI Putative uncharacterized protein Length = 175 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/173 (35%), Positives = 98/173 (56%), Gaps = 7/173 (4%) Query: 23 GTNFFLVPYKXXXXXXXXXXXXXXXXXXAKIGLAIIMCSAPVFLLAWLKERDIFYSSVLG 82 G N FL+P K + GL+I++ S P+F LAW K+R F++S+ G Sbjct: 2 GINGFLIPNKVLDGGVIGLGLICNYLWGFEAGLSILLMSIPIFALAWFKDRGYFFNSLHG 61 Query: 83 LVISSFMIELIGPLQYYFLYYVE--LGSVSSAIIXXXXXXXXXXXXXXXXASTGGTDLLA 140 L++SS +I+++ P+ L Y++ +GS++ + STGGTDLLA Sbjct: 62 LLLSSILIDIMNPVSRS-LPYIDPAIGSIAGGALVGLGIGLMLRYG----TSTGGTDLLA 116 Query: 141 KFIKRYIPLNLGVIIFLTDALIIGAGGLLISKETFFHSILTILSGGVATGLCT 193 +FI +N+G++I L D L+I GGLL+S +TF S++T+L+ G+ T LCT Sbjct: 117 QFIADLSGINVGIVILLIDCLVISIGGLLVSGDTFMLSLITVLTVGLVTSLCT 169 >Q5KZT5.1 Q5KZT5_GEOKA Hypothetical conserved protein Length = 204 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 65/188 (34%), Positives = 96/188 (51%), Gaps = 4/188 (2%) Query: 9 KYAVILLAGLLIATGTNFFLVPYKXXXXXXXXXXXXXXXXXXAKIGLAIIMCSAPVFLLA 68 K A +++ LL+ G N FLVP+ + GL +I+ S P++ A Sbjct: 17 KMAAVIVGSLLLGVGINVFLVPHHLLDGGMIGLGLIAKYVWHVQAGLTMIVLSVPLYAAA 76 Query: 69 WLKERDIFYSSVLGLVISSFMIELIGPLQYYFLYYVELGSVSSAIIXXXXXXXXXXXXXX 128 W R FY+S+ GL+ SS+MI+++ L+ V L + SA+I Sbjct: 77 WFYYRPFFYNSLHGLLFSSWMIDVLSVLRGV----VVLDPLLSAVIGGVLVGAGIGLMLR 132 Query: 129 XXASTGGTDLLAKFIKRYIPLNLGVIIFLTDALIIGAGGLLISKETFFHSILTILSGGVA 188 STGGTDLLA+FI R+ N+G+IIF+ DA II AG ++I F HS++ + G Sbjct: 133 EETSTGGTDLLAQFIARWTNWNVGIIIFVIDACIISAGSMIIDSVPFVHSLVVVTVVGAV 192 Query: 189 TGLCTLEK 196 T + T EK Sbjct: 193 TTMLTCEK 200 >C3J6G3.1 C3J6G3_9BACI Putative uncharacterized protein Length = 191 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 65/188 (34%), Positives = 96/188 (51%), Gaps = 4/188 (2%) Query: 9 KYAVILLAGLLIATGTNFFLVPYKXXXXXXXXXXXXXXXXXXAKIGLAIIMCSAPVFLLA 68 K A +++ LL+ G N FLVP+ + GL +I+ S P++ A Sbjct: 4 KMAAVIVGSLLLGVGINVFLVPHHLLDGGMIGLGLIAKYVWHVQAGLTMIVLSVPLYAAA 63 Query: 69 WLKERDIFYSSVLGLVISSFMIELIGPLQYYFLYYVELGSVSSAIIXXXXXXXXXXXXXX 128 W R FY+S+ GL+ SS+MI+++ L+ V L + SA+I Sbjct: 64 WFYYRPFFYNSLHGLLFSSWMIDVLSVLRGV----VVLDPLLSAVIGGVLVGAGIGLMLR 119 Query: 129 XXASTGGTDLLAKFIKRYIPLNLGVIIFLTDALIIGAGGLLISKETFFHSILTILSGGVA 188 STGGTDLLA+FI R+ N+G+IIF+ DA II AG ++I F HS++ + G Sbjct: 120 EETSTGGTDLLAQFIARWTNWNVGIIIFVIDACIISAGSMIIDSVPFVHSLVVVTVVGAV 179 Query: 189 TGLCTLEK 196 T + T EK Sbjct: 180 TTMLTREK 187 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.146 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 938,935,857 Number of extensions: 30269648 Number of successful extensions: 90146 Number of sequences better than 1.0e-05: 40 Number of HSP's gapped: 90535 Number of HSP's successfully gapped: 40 Length of query: 196 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 67 Effective length of database: 1,845,385,268 Effective search space: 123640812956 Effective search space used: 123640812956 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 127 (53.5 bits)