BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0531.0011.p (257 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3BMM6.1 C3BMM6_9BACI Putative uncharacterized protein 337 9e-91 C3ANC1.1 C3ANC1_BACMY Putative uncharacterized protein 337 9e-91 B7IQK1.1 B7IQK1_BACC2 Putative membrane protein 335 3e-90 C3DMG9.1 C3DMG9_BACTS Putative uncharacterized protein 335 3e-90 C2PP73.1 C2PP73_BACCE Putative uncharacterized protein 335 3e-90 >C3BMM6.1 C3BMM6_9BACI Putative uncharacterized protein Length = 259 Score = 337 bits (863), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 161/251 (64%), Positives = 198/251 (78%) Query: 4 IIQLLHFGYHQAMSCIFPVAIFGTLALSSAIELPFIYRYDAILLILLAVQYLMYRSGLET 63 I QLL F Y QA+SCIFPV IF TLALS I +P +YRYD IL++ L +QY+MY++G+ET Sbjct: 4 IKQLLFFAYQQALSCIFPVVIFVTLALSKFISIPGLYRYDFILIVCLLMQYIMYKTGMET 63 Query: 64 IDEIKVICVFHVIGLLLEIYKVRMGSWAYPEPGLTKLLGVPLYSGFMYASVASFMCQIWR 123 DE+KVI VFH+IGLLLEIYKV GSW+YPE +K+ GVPLYSGFMYASVAS++CQ WR Sbjct: 64 KDELKVIAVFHLIGLLLEIYKVHFGSWSYPEEAYSKIFGVPLYSGFMYASVASYICQAWR 123 Query: 124 RLKMDMTGWPXXXXXXXXXXXIYLNFFTHHFIPDFRWWLTALVLIVFWRTWIIYRVRNAT 183 RL + M WP IYLNFFTHHF+ DFRW LTAL+ IVF+RT++ + V+N T Sbjct: 124 RLHLQMHRWPKAMWTVPLGAMIYLNFFTHHFVYDFRWVLTALLFIVFFRTFVQFSVQNVT 183 Query: 184 YRMPLTLAFFIVGFFIWLAENIATFFNAWRYPNQYQAWHLVSLSKISSWFLLVIISVIIV 243 Y MPL L+FF++GFFIW+AENIATFF AW+YPNQ +AW LV + KISSWFLLV+IS++IV Sbjct: 184 YTMPLVLSFFLIGFFIWIAENIATFFGAWQYPNQREAWSLVHIGKISSWFLLVVISIMIV 243 Query: 244 AQLKHVKAGRE 254 AQLKH+K + Sbjct: 244 AQLKHLKEHKN 254 >C3ANC1.1 C3ANC1_BACMY Putative uncharacterized protein Length = 259 Score = 337 bits (863), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 161/251 (64%), Positives = 198/251 (78%) Query: 4 IIQLLHFGYHQAMSCIFPVAIFGTLALSSAIELPFIYRYDAILLILLAVQYLMYRSGLET 63 I QLL F Y QA+SCIFPV IF TLALS I +P +YRYD IL++ L +QY+MY++G+ET Sbjct: 4 IKQLLFFAYQQALSCIFPVVIFVTLALSKFISIPGLYRYDFILIVCLLMQYIMYKTGMET 63 Query: 64 IDEIKVICVFHVIGLLLEIYKVRMGSWAYPEPGLTKLLGVPLYSGFMYASVASFMCQIWR 123 DE+KVI VFH+IGLLLEIYKV GSW+YPE +K+ GVPLYSGFMYASVAS++CQ WR Sbjct: 64 KDELKVIAVFHLIGLLLEIYKVHFGSWSYPEEAYSKIFGVPLYSGFMYASVASYICQAWR 123 Query: 124 RLKMDMTGWPXXXXXXXXXXXIYLNFFTHHFIPDFRWWLTALVLIVFWRTWIIYRVRNAT 183 RL + M WP IYLNFFTHHF+ DFRW LTAL+ IVF+RT++ + V+N T Sbjct: 124 RLHLQMHRWPKAMWTVPLGAMIYLNFFTHHFVYDFRWVLTALLFIVFFRTFVQFSVQNVT 183 Query: 184 YRMPLTLAFFIVGFFIWLAENIATFFNAWRYPNQYQAWHLVSLSKISSWFLLVIISVIIV 243 Y MPL L+FF++GFFIW+AENIATFF AW+YPNQ +AW LV + KISSWFLLV+IS++IV Sbjct: 184 YTMPLVLSFFLIGFFIWIAENIATFFGAWQYPNQREAWSLVHIGKISSWFLLVVISIMIV 243 Query: 244 AQLKHVKAGRE 254 AQLKH+K + Sbjct: 244 AQLKHLKEHKN 254 >B7IQK1.1 B7IQK1_BACC2 Putative membrane protein Length = 254 Score = 335 bits (858), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 159/251 (63%), Positives = 199/251 (79%) Query: 4 IIQLLHFGYHQAMSCIFPVAIFGTLALSSAIELPFIYRYDAILLILLAVQYLMYRSGLET 63 I QLLHF Y QA+SC+FPV IF TLALS I +P +YRYD IL++ L +Q++MY++GLET Sbjct: 4 IKQLLHFTYEQALSCLFPVVIFLTLALSKIISIPGLYRYDFILIVCLLMQWIMYKTGLET 63 Query: 64 IDEIKVICVFHVIGLLLEIYKVRMGSWAYPEPGLTKLLGVPLYSGFMYASVASFMCQIWR 123 DE+KVI VFH+IGLLLEIYKV GSW+YPE +K+ GVPLYSGFMYASVAS++CQ WR Sbjct: 64 KDELKVITVFHLIGLLLEIYKVHFGSWSYPEEAYSKVFGVPLYSGFMYASVASYICQAWR 123 Query: 124 RLKMDMTGWPXXXXXXXXXXXIYLNFFTHHFIPDFRWWLTALVLIVFWRTWIIYRVRNAT 183 RL + M WP IY NFFTHHF+ DFRW LT L+ IVF+RT++ + +R T Sbjct: 124 RLHLQMYHWPRAIFAIPLGAMIYFNFFTHHFLYDFRWVLTVLLFIVFFRTFVEFSLRGVT 183 Query: 184 YRMPLTLAFFIVGFFIWLAENIATFFNAWRYPNQYQAWHLVSLSKISSWFLLVIISVIIV 243 Y+MPL L+FF++GFFIW+AENIATFF AW+YPNQ +AW+LV LSKISSWFLLV+IS++IV Sbjct: 184 YKMPLVLSFFLIGFFIWIAENIATFFGAWQYPNQREAWNLVHLSKISSWFLLVVISIMIV 243 Query: 244 AQLKHVKAGRE 254 QLKH+K ++ Sbjct: 244 TQLKHLKESKK 254 >C3DMG9.1 C3DMG9_BACTS Putative uncharacterized protein Length = 254 Score = 335 bits (858), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 159/251 (63%), Positives = 199/251 (79%) Query: 4 IIQLLHFGYHQAMSCIFPVAIFGTLALSSAIELPFIYRYDAILLILLAVQYLMYRSGLET 63 I QLLHF Y QA+SC+FPV IF TLALS I +P +YRYD IL++ L +Q++MY++GLET Sbjct: 4 IKQLLHFTYEQALSCLFPVVIFLTLALSKIISIPGLYRYDFILIVCLLMQWIMYKTGLET 63 Query: 64 IDEIKVICVFHVIGLLLEIYKVRMGSWAYPEPGLTKLLGVPLYSGFMYASVASFMCQIWR 123 DE+KVI VFH+IGLLLEIYKV GSW+YPE +K+ GVPLYSGFMYASVAS++CQ WR Sbjct: 64 KDELKVITVFHLIGLLLEIYKVHFGSWSYPEEAYSKVFGVPLYSGFMYASVASYICQAWR 123 Query: 124 RLKMDMTGWPXXXXXXXXXXXIYLNFFTHHFIPDFRWWLTALVLIVFWRTWIIYRVRNAT 183 RL + M WP IY NFFTHHF+ DFRW LT L+ IVF+RT++ + +R T Sbjct: 124 RLHLQMYHWPRAIFAIPLGAMIYFNFFTHHFLYDFRWVLTVLLFIVFFRTFVEFSLRGVT 183 Query: 184 YRMPLTLAFFIVGFFIWLAENIATFFNAWRYPNQYQAWHLVSLSKISSWFLLVIISVIIV 243 Y+MPL L+FF++GFFIW+AENIATFF AW+YPNQ +AW+LV LSKISSWFLLV+IS++IV Sbjct: 184 YKMPLVLSFFLIGFFIWIAENIATFFGAWQYPNQREAWNLVHLSKISSWFLLVVISIMIV 243 Query: 244 AQLKHVKAGRE 254 QLKH+K ++ Sbjct: 244 TQLKHLKESKK 254 >C2PP73.1 C2PP73_BACCE Putative uncharacterized protein Length = 254 Score = 335 bits (858), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 160/251 (63%), Positives = 199/251 (79%) Query: 4 IIQLLHFGYHQAMSCIFPVAIFGTLALSSAIELPFIYRYDAILLILLAVQYLMYRSGLET 63 I QLLHF Y QA+SC+FPV IF TLALS I +P +YRYD IL++ L +Q++MY++GLET Sbjct: 4 IKQLLHFTYEQALSCLFPVVIFLTLALSKIILIPGLYRYDFILIVCLLMQWIMYKTGLET 63 Query: 64 IDEIKVICVFHVIGLLLEIYKVRMGSWAYPEPGLTKLLGVPLYSGFMYASVASFMCQIWR 123 DE+KVI VFH+IGLLLEIYKV GSW+YPE +K+ GVPLYSGFMYASVAS++CQ WR Sbjct: 64 KDELKVITVFHLIGLLLEIYKVHFGSWSYPEEAYSKVFGVPLYSGFMYASVASYICQAWR 123 Query: 124 RLKMDMTGWPXXXXXXXXXXXIYLNFFTHHFIPDFRWWLTALVLIVFWRTWIIYRVRNAT 183 RL + M WP IY NFFTHHF+ DFRW LT L+ IVF+RT++ + +R T Sbjct: 124 RLHLQMHHWPSAVFAIPLGAMIYFNFFTHHFLYDFRWVLTVLLFIVFFRTFVEFSLRGFT 183 Query: 184 YRMPLTLAFFIVGFFIWLAENIATFFNAWRYPNQYQAWHLVSLSKISSWFLLVIISVIIV 243 Y+MPL L+FF++GFFIW+AENIATFF AW+YPNQ +AW+LV LSKISSWFLLV+IS++IV Sbjct: 184 YKMPLVLSFFLIGFFIWIAENIATFFGAWQYPNQREAWNLVHLSKISSWFLLVVISIMIV 243 Query: 244 AQLKHVKAGRE 254 QLKH+KA + Sbjct: 244 TQLKHLKASKR 254 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.334 0.145 0.486 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,454,778,469 Number of extensions: 55417342 Number of successful extensions: 207742 Number of sequences better than 1.0e-05: 177 Number of HSP's gapped: 207673 Number of HSP's successfully gapped: 178 Length of query: 257 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 124 Effective length of database: 1,807,701,208 Effective search space: 224154949792 Effective search space used: 224154949792 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 130 (54.7 bits)