BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0531.0010.p (284 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q63A11.1 Q63A11_BACCZ Group-specific protein 342 3e-92 C1EYX3.1 C1EYX3_BACC3 Putative uncharacterized protein 341 4e-92 C3HJY5.1 C3HJY5_BACTU Putative uncharacterized protein 338 3e-91 B3ZHB4.1 B3ZHB4_BACCE Putative uncharacterized protein 338 3e-91 C2NJ35.1 C2NJ35_BACCE Putative uncharacterized protein 337 6e-91 >Q63A11.1 Q63A11_BACCZ Group-specific protein Length = 282 Score = 342 bits (876), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 152/277 (54%), Positives = 219/277 (79%) Query: 1 MKSKLVLIEGLPGSGKTTTAQLVHEILTEMNLTSRLFLEGDLDHPADYDGVAHFTKNEFV 60 M +KL+++EGLPG GK+TTAQL+++IL++ + LFLEG+L+HPADYDGV+ F K EF Sbjct: 1 MNTKLIIVEGLPGFGKSTTAQLINDILSQNKIEVELFLEGNLNHPADYDGVSCFNKFEFD 60 Query: 61 ELLSTFEKHRDLLSNRVVKQDNNYFMAYRKLKNEYGASFPDELLHASAGNDVYELPLDQN 120 LLS +++L RV+K+ +NY + YRK+KNE+G F DEL + + ND+YELP D+N Sbjct: 61 RLLSNSGDFKEVLLKRVLKKGSNYLLPYRKIKNEFGDQFSDELFNDISRNDIYELPFDKN 120 Query: 121 RKLIAERWKKFADGALKGSDIFVFDCCFIQNPVTIGMIKYGAQKEDVISYVAELAVIAER 180 +LIA++W FA+ AL+ + +++F+CCFIQNP+TIGMIKYG QKE +I+YV ++A I E Sbjct: 121 VELIADKWNDFAEIALEDNKVYIFECCFIQNPLTIGMIKYGEQKEKIINYVMKVAKIIEN 180 Query: 181 LNPLLIYVEQNDLDHSFRKAVAERPEEWSGGFIEYYTNQGYGKKHGHTGLEGTLQVLQAR 240 LNP+L+YVEQ++L+ SFRKA+ ER EWS GF++YYTNQGYGK+H H+G+EGT++VL+AR Sbjct: 181 LNPMLLYVEQDNLELSFRKALKERTPEWSAGFVDYYTNQGYGKEHNHSGVEGTIKVLEAR 240 Query: 241 RKLEAEIFSGLKIAKQKVNNSSYDINEYKQVIAEILS 277 R LE EIF LK+ K+K+NN+ Y+I+ Y+ ++ + L+ Sbjct: 241 RNLELEIFDMLKMNKEKINNTKYEIDSYRSMLKDKLT 277 >C1EYX3.1 C1EYX3_BACC3 Putative uncharacterized protein Length = 282 Score = 341 bits (875), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 152/277 (54%), Positives = 217/277 (78%) Query: 1 MKSKLVLIEGLPGSGKTTTAQLVHEILTEMNLTSRLFLEGDLDHPADYDGVAHFTKNEFV 60 M +KL+++EGLPG GK+TTAQL+++IL++ + LFLEG+L+HPADYDGV+ F K EF Sbjct: 1 MNTKLIIVEGLPGFGKSTTAQLINDILSQNKIEVELFLEGNLNHPADYDGVSCFNKFEFD 60 Query: 61 ELLSTFEKHRDLLSNRVVKQDNNYFMAYRKLKNEYGASFPDELLHASAGNDVYELPLDQN 120 LLS +++L RV+K+ +NY + YRK+KNE+G FPDEL + + ND+YELP D+N Sbjct: 61 RLLSNSGDFKEVLLKRVLKKGSNYLLPYRKIKNEFGDQFPDELFNDISRNDIYELPFDKN 120 Query: 121 RKLIAERWKKFADGALKGSDIFVFDCCFIQNPVTIGMIKYGAQKEDVISYVAELAVIAER 180 +LIA++W+ FA+ AL+ +++F+CCFIQNP+TIGMIKYG QKE +I+YV ++A I E Sbjct: 121 IELIADKWQDFAEIALEDDKVYIFECCFIQNPLTIGMIKYGEQKEKIINYVMKVAKIIEN 180 Query: 181 LNPLLIYVEQNDLDHSFRKAVAERPEEWSGGFIEYYTNQGYGKKHGHTGLEGTLQVLQAR 240 LNP+L YVEQ+DL+ SFRKA+ ER EWS G ++YYTNQGYGK+H H+G+EG ++VL+AR Sbjct: 181 LNPMLFYVEQDDLEFSFRKALKERNPEWSTGIVDYYTNQGYGKEHNHSGVEGAIKVLEAR 240 Query: 241 RKLEAEIFSGLKIAKQKVNNSSYDINEYKQVIAEILS 277 R LE EIF LK+ K+K+NN+ Y+I+ Y+ ++ + L+ Sbjct: 241 RNLELEIFDMLKMKKEKINNTKYEIDSYRSMLKDKLT 277 >C3HJY5.1 C3HJY5_BACTU Putative uncharacterized protein Length = 282 Score = 338 bits (867), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 151/277 (54%), Positives = 216/277 (77%) Query: 1 MKSKLVLIEGLPGSGKTTTAQLVHEILTEMNLTSRLFLEGDLDHPADYDGVAHFTKNEFV 60 M +KL+++EGLPG GK+TTAQL+++IL++ + LFLEG+L+HPADYDGV+ F K EF Sbjct: 1 MNTKLIIVEGLPGFGKSTTAQLINDILSQNKIEVELFLEGNLNHPADYDGVSCFNKFEFD 60 Query: 61 ELLSTFEKHRDLLSNRVVKQDNNYFMAYRKLKNEYGASFPDELLHASAGNDVYELPLDQN 120 LLS +++L RV+K+ +NY + YRK+KNE+G F DEL + + ND+YELP D+N Sbjct: 61 RLLSNSGDFKEVLLKRVLKKGSNYLLPYRKIKNEFGDQFSDELFNDISRNDIYELPFDKN 120 Query: 121 RKLIAERWKKFADGALKGSDIFVFDCCFIQNPVTIGMIKYGAQKEDVISYVAELAVIAER 180 +LIA++W+ FA+ AL+ +++F+CCFIQNP+TIGMIKYG QKE +I+YV ++A I E Sbjct: 121 VELIADKWQDFAEIALEDDKVYIFECCFIQNPLTIGMIKYGEQKEKIINYVMKVAKIIEN 180 Query: 181 LNPLLIYVEQNDLDHSFRKAVAERPEEWSGGFIEYYTNQGYGKKHGHTGLEGTLQVLQAR 240 LNP+L YVEQ+DL+ SFRKA+ ER EWS G ++YYTNQGYGK+H H+G+EG ++VL+AR Sbjct: 181 LNPMLFYVEQDDLEFSFRKALKERNPEWSTGIVDYYTNQGYGKEHNHSGVEGVIKVLEAR 240 Query: 241 RKLEAEIFSGLKIAKQKVNNSSYDINEYKQVIAEILS 277 R LE EIF LK+ K+K+NN+ Y+I+ Y+ ++ + L+ Sbjct: 241 RNLELEIFDMLKMKKEKINNTKYEIDSYRSMLKDKLT 277 >B3ZHB4.1 B3ZHB4_BACCE Putative uncharacterized protein Length = 282 Score = 338 bits (867), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 151/277 (54%), Positives = 216/277 (77%) Query: 1 MKSKLVLIEGLPGSGKTTTAQLVHEILTEMNLTSRLFLEGDLDHPADYDGVAHFTKNEFV 60 M +KL+++EGLPG GK+TTAQL+++IL++ + LFLEG+L+HPADYDGV+ F K EF Sbjct: 1 MNTKLIIVEGLPGFGKSTTAQLINDILSQNKIEVELFLEGNLNHPADYDGVSCFNKFEFD 60 Query: 61 ELLSTFEKHRDLLSNRVVKQDNNYFMAYRKLKNEYGASFPDELLHASAGNDVYELPLDQN 120 LLS +++L RV+K+ +NY + YRK+KNE+G FPDEL + + ND+YELP D+N Sbjct: 61 RLLSNSGDFKEVLLKRVLKKGSNYLLPYRKIKNEFGDQFPDELFNDISRNDIYELPFDKN 120 Query: 121 RKLIAERWKKFADGALKGSDIFVFDCCFIQNPVTIGMIKYGAQKEDVISYVAELAVIAER 180 +LIA++W+ FA+ A + + +++F+CCFIQNP+TIGMIKYG QKE +I+YV ++A I E Sbjct: 121 IELIADKWQDFAEIAREDNKVYIFECCFIQNPLTIGMIKYGEQKEKIINYVMKVAKIIEN 180 Query: 181 LNPLLIYVEQNDLDHSFRKAVAERPEEWSGGFIEYYTNQGYGKKHGHTGLEGTLQVLQAR 240 LNP+L YVEQ+DL+ SFRKA+ ER EWS G ++YYTNQGYGK+H H+G+EG ++VL+AR Sbjct: 181 LNPMLFYVEQDDLEFSFRKALKERNPEWSTGIVDYYTNQGYGKEHNHSGVEGAIKVLEAR 240 Query: 241 RKLEAEIFSGLKIAKQKVNNSSYDINEYKQVIAEILS 277 R LE EIF LK+ K+K+NN+ Y+I+ Y ++ + L+ Sbjct: 241 RNLELEIFDMLKMKKEKINNTKYEIDSYSSMLKDKLT 277 >C2NJ35.1 C2NJ35_BACCE Putative uncharacterized protein Length = 282 Score = 337 bits (865), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 151/277 (54%), Positives = 215/277 (77%) Query: 1 MKSKLVLIEGLPGSGKTTTAQLVHEILTEMNLTSRLFLEGDLDHPADYDGVAHFTKNEFV 60 M +KL+++EGLPG GK+TTA+L++EIL++ + LFLEG+L+HPADYDGV+ F K EF Sbjct: 1 MNTKLIIVEGLPGFGKSTTAKLINEILSQNKIEVELFLEGNLNHPADYDGVSCFNKFEFD 60 Query: 61 ELLSTFEKHRDLLSNRVVKQDNNYFMAYRKLKNEYGASFPDELLHASAGNDVYELPLDQN 120 LL +++L RV+K+ +NY + YRK+KNE+G FPDEL + + ND+YELP D+N Sbjct: 61 RLLFNSGDFKEVLLKRVLKKGSNYLLPYRKIKNEFGDQFPDELFNNMSRNDIYELPFDKN 120 Query: 121 RKLIAERWKKFADGALKGSDIFVFDCCFIQNPVTIGMIKYGAQKEDVISYVAELAVIAER 180 +LIA++WK FA+ A + + +++F+CCFIQNP+TIGMIKYG QKE +I+YV ++A I E Sbjct: 121 IELIADKWKDFAEIAREDNKVYIFECCFIQNPLTIGMIKYGEQKEKIINYVMKVAKIIEN 180 Query: 181 LNPLLIYVEQNDLDHSFRKAVAERPEEWSGGFIEYYTNQGYGKKHGHTGLEGTLQVLQAR 240 LNP+L YVEQ+DL+ SFRKA+ ER EWS G ++YYTNQGYGK+H H+G+EG ++VL+AR Sbjct: 181 LNPMLFYVEQDDLEFSFRKALKERNPEWSTGIVDYYTNQGYGKEHNHSGVEGAIKVLEAR 240 Query: 241 RKLEAEIFSGLKIAKQKVNNSSYDINEYKQVIAEILS 277 R LE EIF LK+ K+K+NN+ Y+I+ Y ++ + L+ Sbjct: 241 RNLELEIFDMLKMKKEKINNTKYEIDSYSSMLKDKLT 277 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.136 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,675,398,626 Number of extensions: 69680200 Number of successful extensions: 264148 Number of sequences better than 1.0e-05: 64 Number of HSP's gapped: 264144 Number of HSP's successfully gapped: 64 Length of query: 284 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 150 Effective length of database: 1,798,280,193 Effective search space: 269742028950 Effective search space used: 269742028950 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)