BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0530.0030.p (236 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0FIP0.1 C0FIP0_9CLOT Putative uncharacterized protein 211 5e-53 C0FIN7.1 C0FIN7_9CLOT Putative uncharacterized protein 209 1e-52 A5KMZ9.1 A5KMZ9_9FIRM Putative uncharacterized protein 164 9e-39 Q3XZ06.1 Q3XZ06_ENTFC Regulatory protein, GntR:Bacterial regulat... 160 1e-37 Q97DH5.1 Q97DH5_CLOAB Transcriptional regulator, fadR family 157 6e-37 >C0FIP0.1 C0FIP0_9CLOT Putative uncharacterized protein Length = 242 Score = 211 bits (537), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 105/236 (44%), Positives = 152/236 (64%) Query: 1 MLDEKIATPLYEQLKEKLKNEIAEGRLKPGEKLLPEVELAQKYEVSVITVRRATNELRNE 60 MLD K ATPLY QL ++L+ +I+EG L P +L E EL+++Y VS+ITVR+A L + Sbjct: 1 MLDGKAATPLYVQLIQELEAKISEGILTPEARLPSESELSKQYGVSIITVRKAVGSLAEK 60 Query: 61 GLLEKRQGKGTFVAMAKYPKDLNQILSFTEASKLIGAVPSAKVLASELMIPGNDILEQLE 120 GL+EK+QGKGT+V KY +D+ + SFTE G ++L + +++P I L Sbjct: 61 GLVEKKQGKGTYVTKKKYTRDMKNLQSFTELCGRYGVRAGGRMLENRIVVPDERIARLLG 120 Query: 121 LPPGSQTVYISRLRLLDNNPMVIENNYFSIQYSFLLEENLNDHSLFQILKEKTGIQISKS 180 L PGSQTV+ISR+R D P+VIE+NYF + YSFLL E +D+SLFQ L++K + + S Sbjct: 121 LEPGSQTVFISRVRCADGEPVVIEHNYFPLSYSFLLGETFHDNSLFQYLRDKREVTVDGS 180 Query: 181 KRTIEICRATMQEASYLQVSKNSPLLLVHGVVYGNNDKIVYVGNQIINGEKYKLHV 236 ++ E+CRA ++EA L+V K LL + V Y K +Y G Q++ GE + +V Sbjct: 181 EKWFELCRAGVKEARLLKVKKGGALLRIRSVAYNIQGKPIYAGVQLVKGECFSFYV 236 >C0FIN7.1 C0FIN7_9CLOT Putative uncharacterized protein Length = 242 Score = 209 bits (533), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 106/236 (44%), Positives = 151/236 (63%) Query: 1 MLDEKIATPLYEQLKEKLKNEIAEGRLKPGEKLLPEVELAQKYEVSVITVRRATNELRNE 60 ML+ K TPLY QL ++++ +I G +PGE+L E E+A+ + VS+ITVR A + L + Sbjct: 1 MLNGKTVTPLYVQLMKQIEEKIRCGVYQPGERLQSESEMAKSFGVSIITVRSAVSGLVEK 60 Query: 61 GLLEKRQGKGTFVAMAKYPKDLNQILSFTEASKLIGAVPSAKVLASELMIPGNDILEQLE 120 GL+EK+QGKGTFV+ K+ KD+ + SFTE + +G P K+L + L+ P + L Sbjct: 61 GLVEKKQGKGTFVSRPKFTKDMKNLQSFTEMCRYMGMEPGGKMLENCLVSPDEKTRKLLG 120 Query: 121 LPPGSQTVYISRLRLLDNNPMVIENNYFSIQYSFLLEENLNDHSLFQILKEKTGIQISKS 180 L GSQ + ISRLR D P+ IE NYF I+Y+FLL+E +++SLF L EK + +S S Sbjct: 121 LEKGSQVISISRLRYADGQPVAIEKNYFPIKYAFLLDETFDNNSLFSFLHEKAKVTVSAS 180 Query: 181 KRTIEICRATMQEASYLQVSKNSPLLLVHGVVYGNNDKIVYVGNQIINGEKYKLHV 236 ++ I ICR T EA L VSK SPLL + V Y +++ +YVG QI NGE ++ Sbjct: 181 EKWIGICRTTASEAKLLGVSKGSPLLFIKSVTYTQDNEPLYVGVQIFNGENCSFYI 236 >A5KMZ9.1 A5KMZ9_9FIRM Putative uncharacterized protein Length = 302 Score = 164 bits (414), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 88/235 (37%), Positives = 143/235 (60%), Gaps = 1/235 (0%) Query: 2 LDEKIATPLYEQLKEKLKNEIAEGRLKPGEKLLPEVELAQKYEVSVITVRRATNELRNEG 61 L+ IATPLY+QL+EKL++EI G G +L E EL++ Y VS +TVR+A L G Sbjct: 69 LNNTIATPLYKQLEEKLQHEIETGERPAGSRLPTENELSETYHVSRVTVRKALAGLSELG 128 Query: 62 LLEKRQGKGTFVAMAKYPKDLNQILSFTEASKLIGAVPSAKVLASELMIPGNDILEQLEL 121 L+++ GKGTFVA K + + +++SFT+ +++ A AK + L P ++++ L Sbjct: 129 YLDRKSGKGTFVAEKKLHRSITEVISFTDMCRMMNATAGAKTIKIALEEPSEREIKEMSL 188 Query: 122 PPGSQTVYISRLRLLDNNPMVIENNYFSIQYSFLLEENLNDHSLFQILKEKTGIQISKSK 181 PG + + + R+R +D+ P++IE N F +SFL E+LND SLF++LK K I + S+ Sbjct: 189 KPGEKILVLERIRYMDDEPVIIELNKFPESFSFLFGEDLNDTSLFEVLK-KHNIILDHSR 247 Query: 182 RTIEICRATMQEASYLQVSKNSPLLLVHGVVYGNNDKIVYVGNQIINGEKYKLHV 236 +T++I A+ QEA L ++K PLL + ++ + I + Q+ G+K+ V Sbjct: 248 KTLDIIFASPQEAKALNINKGYPLLRIKSTIHDVENTITNLCQQLCIGDKFTFIV 302 >Q3XZ06.1 Q3XZ06_ENTFC Regulatory protein, GntR:Bacterial regulatory protein, GntR Length = 236 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 92/237 (38%), Positives = 141/237 (59%), Gaps = 2/237 (0%) Query: 1 MLDEKIATPLYEQLKEKLKNEIAEGRLKPGEKLLPEVELAQKYEVSVITVRRATNELRNE 60 MLD PLY QLKE LKN+I G K+ E EL + YEVS ITVR+A EL E Sbjct: 1 MLDTNAQLPLYLQLKEILKNKINTGEYPENTKIPAESELIESYEVSRITVRKAVEELVEE 60 Query: 61 GLLEKRQGKGTFVAMAKYPKDLNQILSFTEASKLIGAVPSAKVLASELMIPGNDILEQLE 120 G L K+QGKGTFV K + + ++ F+E+ K G P++ VL +++ + ++L+ Sbjct: 61 GYLLKKQGKGTFVNRHKVFRKIEYVMGFSESCKSNGFTPTSIVLERKIIPATEGMAKKLD 120 Query: 121 LPPGSQTVYISRLRLLDNNPMVIENNYFSIQ-YSFLLEENLNDHSLFQILKEKTGIQISK 179 + G +YI R R+ DN P+++ENNYFS + YSFL+EE L D SL+++LK + + I+ Sbjct: 121 IAQGDDVLYIQRKRMADNIPIMLENNYFSYERYSFLMEEELTD-SLYEVLKVQGTLAINP 179 Query: 180 SKRTIEICRATMQEASYLQVSKNSPLLLVHGVVYGNNDKIVYVGNQIINGEKYKLHV 236 + +EI A Q A ++V+ +P + ++ N+ ++VGNQ GE Y+ ++ Sbjct: 180 GETALEIVTADDQIAKIMEVAVGTPFFFMDTLINDQNNIPIHVGNQYYLGEVYRFYL 236 >Q97DH5.1 Q97DH5_CLOAB Transcriptional regulator, fadR family Length = 237 Score = 157 bits (398), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 86/232 (37%), Positives = 142/232 (61%), Gaps = 2/232 (0%) Query: 2 LDEKIATPLYEQLKEKLKNEIAEGRLKPGEKLLPEVELAQKYEVSVITVRRATNELRNEG 61 L+ IATPLY+QL++KL+ EI G+ G +L E EL++ Y VS +TVR+A EL G Sbjct: 3 LNNTIATPLYKQLEKKLQQEIDSGKRPAGSRLPTENELSKAYNVSRVTVRKALAELSESG 62 Query: 62 LLEKRQGKGTFVAMAKYPKDL-NQILSFTEASKLIGAVPSAKVLASELMIPGNDILEQLE 120 LE++ GKGTFVA K + + N +L F+E K++ A+P AK++ L P ++++ Sbjct: 63 YLERKSGKGTFVAEKKLERGITNGVLGFSEMCKMMNAIPGAKIIKIALEEPSEKDIQKMS 122 Query: 121 LPPGSQTVYISRLRLLDNNPMVIENNYFSIQYSFLLEENLNDHSLFQILKEKTGIQISKS 180 L + + + R+R + P+++E N F +SFL EENL D SL+ IL E+ I + S Sbjct: 123 LNKDEKVLVLERVRYANGKPVLLELNKFPESFSFLFEENLTDASLYDIL-EQHNIILDHS 181 Query: 181 KRTIEICRATMQEASYLQVSKNSPLLLVHGVVYGNNDKIVYVGNQIINGEKY 232 ++T++I A +EA L +S+ PLL ++ +++ ++ I + Q+ G+K+ Sbjct: 182 RKTLDIVFADTKEAKTLGISRGYPLLRINSIIHNADNTITNLCQQLCIGDKF 233 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.134 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,323,550,785 Number of extensions: 51751601 Number of successful extensions: 146230 Number of sequences better than 1.0e-05: 4362 Number of HSP's gapped: 144458 Number of HSP's successfully gapped: 4362 Length of query: 236 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 104 Effective length of database: 1,817,122,223 Effective search space: 188980711192 Effective search space used: 188980711192 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 129 (54.3 bits)