BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0530.0029.p (328 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q8ENM9.1 Q8ENM9_OCEIH Oligopeptide ABC transporter ATP-binding p... 417 e-115 Q5WIM8.1 Q5WIM8_BACSK Oligopeptide ABC transporter ATP-binding p... 417 e-115 C0ZC58.1 C0ZC58_BREBN Oligopeptide ABC transporter ATP binding p... 413 e-113 Q67KJ0.1 Q67KJ0_SYMTH Oligopeptide ABC transporter ATP-binding p... 413 e-113 C0FIP5.1 C0FIP5_9CLOT Putative uncharacterized protein 412 e-113 >Q8ENM9.1 Q8ENM9_OCEIH Oligopeptide ABC transporter ATP-binding protein Length = 340 Score = 417 bits (1073), Expect = e-115, Method: Compositional matrix adjust. Identities = 196/321 (61%), Positives = 253/321 (78%) Query: 8 LLEVRELKKHYTSKSGLLSRKKPVVKAVDGISLNIRKGEILGLVGESGCGKSTLGRSILR 67 LLEVR LKK++ K G+L R VKAVD +S + GEILG+VGESGCGKST G++ILR Sbjct: 8 LLEVRSLKKYFPVKGGVLGRSVGEVKAVDDVSFEVYPGEILGIVGESGCGKSTTGKAILR 67 Query: 68 LIEPTSGNIVFEGQDILAYGKEEKRMMRKELQIIFQDSGAALNPRMTVGEIIGAPLDIYG 127 LIEPT G ++F+G+DI E+ R++RK++QIIFQD A+LNPR TV +II PL I+ Sbjct: 68 LIEPTEGEVIFQGKDITKLNAEQMRLLRKDMQIIFQDPYASLNPRHTVEKIINEPLMIHT 127 Query: 128 LAQGEAKERRINELLELVGLNKDYVNRFPHEFSGGQKQRIGIARALAVEPKLIVCDEPVS 187 A+ + +RI ELLE+VGL+ + +R+PH+FSGGQ+QRIGIARALA PKLI+CDEPVS Sbjct: 128 DAKKAERRKRIKELLEVVGLSPYHASRYPHQFSGGQRQRIGIARALANNPKLIICDEPVS 187 Query: 188 ALDVSVRAQVLNLMKELKEKLGLTYLFISHDLSVVHHLCDRVAVMYLGKIVEITDRNELY 247 ALDVSV++QVLNLM++L+++ LTY+FI+HDLSVV H+ DRV VMYLGK+VEI +++LY Sbjct: 188 ALDVSVQSQVLNLMEKLRDEFQLTYIFIAHDLSVVKHISDRVGVMYLGKMVEIAPKDQLY 247 Query: 248 GNPLHPYTKALLSAIPNPNPEISRERIVLEGDVPSPSNPPPGCSFHTRCPYRMDKCSVEV 307 N HPYT+ALLSA+P+P+P++ RERI+LEGDVPSP +PP GC FHTRCP MD C E+ Sbjct: 248 DNAKHPYTQALLSAVPDPDPDVQRERIILEGDVPSPQDPPSGCPFHTRCPMAMDICRQEL 307 Query: 308 PILLQTQGNHSVSCHLYNDEH 328 P L + NH V+CHLY+DE Sbjct: 308 PQFLPVEDNHVVACHLYSDEQ 328 >Q5WIM8.1 Q5WIM8_BACSK Oligopeptide ABC transporter ATP-binding protein Length = 332 Score = 417 bits (1073), Expect = e-115, Method: Compositional matrix adjust. Identities = 189/323 (58%), Positives = 254/323 (78%) Query: 4 PSPYLLEVRELKKHYTSKSGLLSRKKPVVKAVDGISLNIRKGEILGLVGESGCGKSTLGR 63 P+ +LEV++LK +++ G+ SRK VKAVDG++ ++++GEILG+VGESGCGKST G+ Sbjct: 2 PAKPILEVKQLKTYFSINGGVFSRKIGEVKAVDGVTFSVKEGEILGIVGESGCGKSTTGK 61 Query: 64 SILRLIEPTSGNIVFEGQDILAYGKEEKRMMRKELQIIFQDSGAALNPRMTVGEIIGAPL 123 SILRLIEPT G +VF GQ + A EE R +R+++Q+IFQD A+LNPR T+ +II PL Sbjct: 62 SILRLIEPTEGEVVFNGQKVTALSAEEVRKLRRDMQMIFQDPYASLNPRHTIEKIISEPL 121 Query: 124 DIYGLAQGEAKERRINELLELVGLNKDYVNRFPHEFSGGQKQRIGIARALAVEPKLIVCD 183 +++G+ E +++++ ELLE VGL ++ R+PH+FSGGQ+QRIGIARALAV PKL++CD Sbjct: 122 NVHGIGTKEERKQKVAELLETVGLRPEHAKRYPHQFSGGQRQRIGIARALAVNPKLVICD 181 Query: 184 EPVSALDVSVRAQVLNLMKELKEKLGLTYLFISHDLSVVHHLCDRVAVMYLGKIVEITDR 243 EPVSALDVSV++Q+LNLM+ LK++ LTYLFI+HDLSVV H+ DRV VMYLG++VE+ D+ Sbjct: 182 EPVSALDVSVQSQILNLMERLKDEFKLTYLFIAHDLSVVKHISDRVGVMYLGRLVELADK 241 Query: 244 NELYGNPLHPYTKALLSAIPNPNPEISRERIVLEGDVPSPSNPPPGCSFHTRCPYRMDKC 303 + LY P HPYTKALLSA+P P+P+I+ ERIVL GDVPSPSNPP GC+FHTRCP MD C Sbjct: 242 DTLYERPKHPYTKALLSAVPVPDPDITNERIVLTGDVPSPSNPPSGCTFHTRCPSCMDIC 301 Query: 304 SVEVPILLQTQGNHSVSCHLYND 326 ++ P+ +CHLYN+ Sbjct: 302 KIKTPVWRDVGNGQFTACHLYNE 324 >C0ZC58.1 C0ZC58_BREBN Oligopeptide ABC transporter ATP binding protein Length = 319 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 196/320 (61%), Positives = 253/320 (79%), Gaps = 9/320 (2%) Query: 8 LLEVRELKKHYTSKSGLLSRKKPVVKAVDGISLNIRKGEILGLVGESGCGKSTLGRSILR 67 L+EVR LKK ++ L KAV+ IS I++GE LG+VGESGCGKST GR+ILR Sbjct: 7 LIEVRNLKKFFSIGDNTL-------KAVNDISFEIKRGETLGIVGESGCGKSTAGRTILR 59 Query: 68 LIEPTSGNIVFEGQDILAYGKEEKRMMRKELQIIFQDSGAALNPRMTVGEIIGAPLDIYG 127 L + T G+++FEG+ I+ ++E + MR+ +Q+IFQD A+LNPRMTVG+IIG LDI+G Sbjct: 60 LYDATEGDVLFEGKSIMNLNQQEMKAMRRNMQMIFQDPYASLNPRMTVGDIIGEALDIHG 119 Query: 128 LAQGEAKERRINELLELVGLNKDYVNRFPHEFSGGQKQRIGIARALAVEPKLIVCDEPVS 187 LA G+ ++ RI ELL LV LN +++NRFPHEFSGGQ+QRIGIARALAVEPK IVCDEP+S Sbjct: 120 LASGQKRKERIQELLSLVSLNPEHMNRFPHEFSGGQRQRIGIARALAVEPKFIVCDEPIS 179 Query: 188 ALDVSVRAQVLNLMKELKEKLGLTYLFISHDLSVVHHLCDRVAVMYLGKIVEITDRNELY 247 ALDVSV+AQV+NL+++L+EK+GLTY+FI+HDLS+V ++ DRVAVMYLGK+VE+ + + LY Sbjct: 180 ALDVSVQAQVVNLLEQLQEKMGLTYMFIAHDLSMVKYISDRVAVMYLGKMVELAESDALY 239 Query: 248 GNPLHPYTKALLSAIPNPNPEI--SRERIVLEGDVPSPSNPPPGCSFHTRCPYRMDKCSV 305 PLHPYT+ALLSAIP P+PEI +RERIVL+GDVPSP NPP GC F TRCP M +C+ Sbjct: 240 EKPLHPYTQALLSAIPIPDPEIERNRERIVLQGDVPSPMNPPSGCHFRTRCPKAMPECAA 299 Query: 306 EVPILLQTQGNHSVSCHLYN 325 VP+ + + H +CHLYN Sbjct: 300 SVPVWKEVEPGHFAACHLYN 319 >Q67KJ0.1 Q67KJ0_SYMTH Oligopeptide ABC transporter ATP-binding protein Length = 338 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 196/320 (61%), Positives = 256/320 (80%), Gaps = 4/320 (1%) Query: 8 LLEVRELKKHY-TSKSGLLSRKKPVVKAVDGISLNIRKGEILGLVGESGCGKSTLGRSIL 66 L++VR LKKH+ + G+++R KAVDG+S IR+GE LGLVGESGCGK+T+G+ +L Sbjct: 16 LVDVRNLKKHFPVTGGGIIARTVGYAKAVDGVSFQIRRGETLGLVGESGCGKTTMGKVLL 75 Query: 67 RLIEPTSGNIVFEGQDILAYGKEEKRMMRKELQIIFQDSGAALNPRMTVGEIIGAPLDIY 126 RL EPT G + FEG++I +EE R +R+E+QIIFQD ++LNPRMTVG+IIG PL+I+ Sbjct: 76 RLQEPTEGQVYFEGRNIYELNREEMRKLRREMQIIFQDPYSSLNPRMTVGDIIGEPLEIH 135 Query: 127 GLAQGEAKERRINELLELVGLNKDYVNRFPHEFSGGQKQRIGIARALAVEPKLIVCDEPV 186 G+A+G AK +R++ELL++VGL + R+PHEFSGGQ+QRIGIARALA+ PKLIVCDEPV Sbjct: 136 GVARGAAKTKRVHELLDVVGLASFHARRYPHEFSGGQRQRIGIARALALNPKLIVCDEPV 195 Query: 187 SALDVSVRAQVLNLMKELKEKLGLTYLFISHDLSVVHHLCDRVAVMYLGKIVEITDRNEL 246 SALDVS+++QVLNL+++L+++ GLTYLFI+H L+VV H+ DRV VMYLGK++EI+ NEL Sbjct: 196 SALDVSIQSQVLNLLEDLQKEFGLTYLFIAHGLAVVKHVSDRVGVMYLGKMMEISPANEL 255 Query: 247 YGNPLHPYTKALLSAIPNPNPEISRERIVLEGDVPSPSNPPPGCSFHTRCPYR---MDKC 303 Y NPLHPYT+AL+SAIP P+P + RERIVLEGDVPSP NPP GC FHTRC Y+ D C Sbjct: 256 YTNPLHPYTEALMSAIPIPDPTLKRERIVLEGDVPSPVNPPSGCRFHTRCRYQPQVGDIC 315 Query: 304 SVEVPILLQTQGNHSVSCHL 323 E P L+ +H V+CH+ Sbjct: 316 KEEEPPLVDVGNDHWVACHM 335 >C0FIP5.1 C0FIP5_9CLOT Putative uncharacterized protein Length = 331 Score = 412 bits (1058), Expect = e-113, Method: Compositional matrix adjust. Identities = 201/322 (62%), Positives = 247/322 (76%), Gaps = 1/322 (0%) Query: 1 MGNPSPYLLEVRELKKHYTSKSGLLSRKKPVVKAVDGISLNIRKGEILGLVGESGCGKST 60 MG+ SP LLE+R LKK++ GL VKAVDGI+L I++GE LGLVGESGCGKST Sbjct: 1 MGD-SPVLLEIRNLKKYFPITRGLFKHTVGYVKAVDGINLKIKRGETLGLVGESGCGKST 59 Query: 61 LGRSILRLIEPTSGNIVFEGQDILAYGKEEKRMMRKELQIIFQDSGAALNPRMTVGEIIG 120 LGRSILRL EP+ G I+ +G DI +EE R RK+LQIIFQD A+LNPRMTVG+I+G Sbjct: 60 LGRSILRLTEPSDGEILLDGTDIRKLNQEELRQYRKKLQIIFQDPFASLNPRMTVGDIVG 119 Query: 121 APLDIYGLAQGEAKERRINELLELVGLNKDYVNRFPHEFSGGQKQRIGIARALAVEPKLI 180 PL I+GL + + E R+ ELL LVGL+ + R+PH+FSGGQ+QRIGIARAL++ P+L+ Sbjct: 120 EPLKIHGLVKKDEMEERVAELLTLVGLDSRIMGRYPHQFSGGQRQRIGIARALSLNPELV 179 Query: 181 VCDEPVSALDVSVRAQVLNLMKELKEKLGLTYLFISHDLSVVHHLCDRVAVMYLGKIVEI 240 +CDEPVSALDVSVR+QVLNLM ELKEKL LT+LFISHDLSVV H+ DRVAVMYLG++VE+ Sbjct: 180 ICDEPVSALDVSVRSQVLNLMNELKEKLNLTFLFISHDLSVVKHISDRVAVMYLGQLVEL 239 Query: 241 TDRNELYGNPLHPYTKALLSAIPNPNPEISRERIVLEGDVPSPSNPPPGCSFHTRCPYRM 300 D+ E+Y NP HPYTKAL+SAIP P+P + R+RI+L GDVPSP NPP GC FH RCP Sbjct: 240 ADKEEIYENPAHPYTKALMSAIPIPDPFVERKRIILAGDVPSPLNPPSGCRFHPRCPLAC 299 Query: 301 DKCSVEVPILLQTQGNHSVSCH 322 C + P L + + H +CH Sbjct: 300 QVCREQEPKLREYKKGHYAACH 321 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.138 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,050,066,337 Number of extensions: 90047427 Number of successful extensions: 564198 Number of sequences better than 1.0e-05: 95238 Number of HSP's gapped: 434531 Number of HSP's successfully gapped: 103908 Length of query: 328 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 192 Effective length of database: 1,779,438,163 Effective search space: 341652127296 Effective search space used: 341652127296 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)