BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0530.0025.p (497 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C5ESY7.1 C5ESY7_9FIRM Peptide/opine/nickel uptake family ABC tra... 326 3e-87 A8RJ73.1 A8RJ73_9CLOT Putative uncharacterized protein 322 6e-86 C0FIP7.1 C0FIP7_9CLOT Putative uncharacterized protein 287 2e-75 Q73N82.1 Q73N82_TREDE Oligopeptide/dipeptide ABC transporter, pe... 260 3e-67 A8RXV6.1 A8RXV6_9CLOT Putative uncharacterized protein 191 1e-46 >C5ESY7.1 C5ESY7_9FIRM Peptide/opine/nickel uptake family ABC transporter Length = 554 Score = 326 bits (836), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 170/451 (37%), Positives = 269/451 (59%), Gaps = 7/451 (1%) Query: 1 MKKNNRLLFVLVMMLTASLLLFGCSSNAGNTAGNASSPPGTEASPQPQSEGGAASG--IV 58 M++N + V+ L ++++L C ++ T G ++ G + P++EGG+++G IV Sbjct: 1 MRRN--FVRVIAASLASAMVLCACGGSSTGTDGTTANAGGGAQAEAPKTEGGSSTGEKIV 58 Query: 59 TMAIISTWDTLNIYNTSGNYGNAVADQLFERLVFREHGGNVIPRLAKSWAMADDNLSMTF 118 T+A WDT + NT+ + V + +F+RL+ G PRLAKSW + +T+ Sbjct: 59 TIAQSGDWDTFMVMNTTNAGADNVNELMFDRLMTINTDGTFEPRLAKSWETNEAQDKITY 118 Query: 119 ELADNVTWHDGEKLTAKDIVFTVQAMTNPAVNNYYRSAFNVLAGTDADGIAQDPAKVGVE 178 L ++ WHDGE +TA+D+V++ Q ++ N R AGTD G V V+ Sbjct: 119 HLYEDAKWHDGEPVTAEDVVYSAQVASSAEYNYLRRIRMQYFAGTDETGCETSTDSVEVK 178 Query: 179 AVSDTSVKFTFKEPKAEETILNAFLSFLYVLPEHILGQGDPASINTSGFWNAPVGAGPFK 238 AV D +V+FT K P + +++P+H+L A + FW PVG+GP Sbjct: 179 AVDDHTVEFTLKTPMDPSIVYALVNRDFFIIPKHLLSGIADADLVNDPFWQKPVGSGPCI 238 Query: 239 FVKQTAGESLQLEAFTDYYQGSPGFKTLVVRVVPAANLTAGLINGDIDVVAMGS-IPLSD 297 F +G S++ A DYY G+P F LV + V ++N+ +GL++G+ID ++ + IPL+D Sbjct: 239 FDSMESGVSIEFLANKDYYLGTPDFDRLVFKKVQSSNILSGLMSGEIDALSGNTQIPLAD 298 Query: 298 WDTVKNNPDIVASSIPDYSYQYMLFNLSKDTFQDSNVRTAFDKAINKTLIVDNLMKGEGG 357 WD N P + A S+P ++YQYM N +++ + +R A AIN+ +IV+ L++G+G Sbjct: 299 WDAANNTPGVKAMSVPTFAYQYMAMNTTRE-YLPEEIRHAISLAINRQVIVEQLLQGQGR 357 Query: 358 VAVGPMPKYHPYYNQSLVPNAYNPDEAKQMLEAAGFDFKREYLLIVPQGNQVREQSALLI 417 VA+GP+P+ H YYN +L Y+P++AK M+EAAG+D RE ++V GN+VRE+SA+LI Sbjct: 358 VAIGPLPEDHKYYNTNLKVE-YDPEKAKSMVEAAGWDANRELEVLVSTGNEVREKSAILI 416 Query: 418 QQDLAAIGVKVKIETYDFATLLSMLKNGESD 448 QQDL IG+K KI+T DF TLL+ +NG+ D Sbjct: 417 QQDLQKIGIKTKIQTLDFPTLLTNARNGDYD 447 >A8RJ73.1 A8RJ73_9CLOT Putative uncharacterized protein Length = 571 Score = 322 bits (825), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 180/464 (38%), Positives = 275/464 (59%), Gaps = 22/464 (4%) Query: 1 MKKNNRLLFVLVMMLTASLLLFGCSSNAGNTAGNASSPPGTEASPQPQSEGGAASG---- 56 M+K RL + + L + L GCS+ + + A + GT A G+ G Sbjct: 9 MRK--RLTKMTALALCLMMGLSGCSAPSAPSDTKAPAATGTAAEGGDAKAEGSIDGNAQE 66 Query: 57 --------IVTMAIISTWDTLNIYNTSGNYGNAVADQLFERLVFREHGGNVIPRLAKSWA 108 IVTMA+ + WDTL +NT+ +AV + +F++L+ + G+ PRLA SW+ Sbjct: 67 NTASQGQKIVTMAMTAPWDTLIPFNTTNANTDAVLELIFDKLIVVKADGSFKPRLADSWS 126 Query: 109 MADD-NLSMTFELADNVTWHDGEKLTAKDIVFTVQAMTNPAVNNYYRSAFNVLAGTDADG 167 M D+ + +TF L N WHDG+ +TA D+V+T + M+NP ++ RS AGT+ DG Sbjct: 127 MDDETHTKITFNLNKNAKWHDGQPVTADDVVYTAELMSNPDISVARRSKVAPFAGTE-DG 185 Query: 168 IAQDPAKVGVEAVSDTSVKFTFKEPKAEETILNAFLSFLYVLPEHILGQGDPASINTSGF 227 I + + GV+A+ +V+FT K+P + +L+ Y+LP+H L + + F Sbjct: 186 IRVEGEEFGVKAIDANTVEFTLKDPTNLDYMLDIMFRDFYILPKHCLEDIPVKDMLAADF 245 Query: 228 WNAPVGAGPFKFVKQTAGESLQLEAFTDYYQGSPGFKTLVVRVVPAANLTAGLINGDIDV 287 W AP+G+GP + + +GE ++ A DY+ +P F VV++VPA+NL +GL+NG+ID+ Sbjct: 246 WKAPIGSGPCIYESEISGERVEFTANKDYHINAPEFDRFVVKIVPASNLLSGLMNGEIDI 305 Query: 288 VA---MGSIPLSDWDTVKNNPDIVASSIPDYSYQYMLFNLSKDTFQDSNVRTAFDKAINK 344 VA +G+IPL+DWD ++ ++ YQY+ N +K+ Q+ VR A + AIN+ Sbjct: 306 VAGAGIGNIPLNDWDMAGQQENLTTEAVESLGYQYLSCN-TKNIPQE--VRQAVNMAINR 362 Query: 345 TLIVDNLMKGEGGVAVGPMPKYHPYYNQSLVPNAYNPDEAKQMLEAAGFDFKREYLLIVP 404 +V+NLMKGEG A GP+ H Y+N+ L+P Y+ D+AKQM+E +GFD + Y L V Sbjct: 363 DALVNNLMKGEGVPAPGPLAPSHRYFNEELLPIPYDVDKAKQMVEESGFDTSKTYRLNVS 422 Query: 405 QGNQVREQSALLIQQDLAAIGVKVKIETYDFATLLSMLKNGESD 448 +GN+VRE+SA +IQQDLA IG+ V+I T D TLLS + GE D Sbjct: 423 KGNEVREKSAPMIQQDLAKIGINVEIITTDHPTLLSTARKGEYD 466 >C0FIP7.1 C0FIP7_9CLOT Putative uncharacterized protein Length = 547 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 155/439 (35%), Positives = 241/439 (54%), Gaps = 2/439 (0%) Query: 11 LVMMLTASLLLFGCSSNAGNTAGNASSPPGTEASPQPQSEGGAA-SGIVTMAIISTWDTL 69 L M L G ++ G AG + S Q E G ++T+ I S +T Sbjct: 4 LWMAALGIFLAVGLTACQGEGAGESGSTQAASQEGQAAQESGTVHKDVITIGISSEPNTY 63 Query: 70 NIYNTSGNYGNAVADQLFERLVFREHGGNVIPRLAKSWAMADDNLSMTFELADNVTWHDG 129 + YN + G+ + D +++RLV+ + G RLA SW ++D +TF L +V WHDG Sbjct: 64 HPYNATSTSGDKIYDFIYDRLVYTSYDGTFSSRLADSWEQSEDGKVITFHLNPDVKWHDG 123 Query: 130 EKLTAKDIVFTVQAMTNPAVNNYYRSAFNVLAGTDADGIAQDPAKVGVEAVSDTSVKFTF 189 E TA+D+VF Q + A RS F+ L GTD +G+ D + +GV A D +V++ F Sbjct: 124 EPFTAQDMVFAAQVGSAEASTVTRRSYFSSLEGTDENGVCTDLSALGVVAADDHTVEYHF 183 Query: 190 KEPKAEETILNAFLSFLYVLPEHILGQGDPASINTSGFWNAPVGAGPFKFVKQTAGESLQ 249 K P A T L+ Y +P H+L + + +W P+G GPF F +GES+ Sbjct: 184 KNPVAVSTFLSIDAQRYYPMPYHLLKDVPMEEMEKNEYWQHPIGTGPFIFDSMVSGESIT 243 Query: 250 LEAFTDYYQGSPGFKTLVVRVVPAANLTAGLINGDIDVVAMGSIPLSDWDTVKNNPDIVA 309 + A DY+ G+P +V +V+ AN +A L++G++D V + +PL D +++ +VA Sbjct: 244 VLANKDYFLGAPNVDRIVFKVMAPANFSAALMSGELDCV-IDDVPLQDLALLQSTEGLVA 302 Query: 310 SSIPDYSYQYMLFNLSKDTFQDSNVRTAFDKAINKTLIVDNLMKGEGGVAVGPMPKYHPY 369 S P Y YM N K+ FQD VR AF KAI++ I++ + G G +AV P+ + Y Sbjct: 303 ESRPSMKYTYMSVNCEKEYFQDYRVRLAFSKAIDRNAIIEQGLYGNGVIAVSPLNPDNQY 362 Query: 370 YNQSLVPNAYNPDEAKQMLEAAGFDFKREYLLIVPQGNQVREQSALLIQQDLAAIGVKVK 429 +N ++ + Y+P+ A+++LE AG+DF RE + + RE + L+IQQ+LA IGVKV Sbjct: 363 FNDAIAGDPYDPEGARELLEEAGWDFDRELTFVSYNTSAPREAATLIIQQNLADIGVKVN 422 Query: 430 IETYDFATLLSMLKNGESD 448 ++ D+ATL+ M + GE D Sbjct: 423 VQMVDWATLIVMAREGECD 441 >Q73N82.1 Q73N82_TREDE Oligopeptide/dipeptide ABC transporter, peptide-binding protein Length = 531 Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 139/392 (35%), Positives = 222/392 (56%), Gaps = 4/392 (1%) Query: 57 IVTMAIISTWDTLNIYNTSGNYGNAVADQLFERLVFREHGGNVIPRLAKSWAMADDNLSM 116 IV++AI WD++ NT+ NY V DQ+++RL + G+ PRLAKSW++ D+ ++ Sbjct: 39 IVSVAIAKPWDSMMPLNTNSNYSRFVYDQIYDRLFMSKANGDYEPRLAKSWSLNADSSAI 98 Query: 117 TFELADNVTWHDGEKLTAKDIVFTVQAMTNPAVNNYYRSAFNVLAGTDADGIAQDPAKVG 176 TF+L +NV WHDG+ TA D+VF+ Q +NP V+ R + G D+ G+ + Sbjct: 99 TFKLQENVKWHDGKPFTAADVVFSFQMYSNPEVDALSRYHLQYIKGVDSSGVQISDKSIA 158 Query: 177 VEAVSDTSVKFTFKEPKAEETILNAFLSFLYVLPEHILGQGDPASINTSGFWNAPVGAGP 236 V A SD V F FK+P + +N L ++++P+HI P IN W +G GP Sbjct: 159 VFANSDYEVTFEFKKPMYFGSFMND-LDTVFIIPKHIFEGKTPQEINAPELWAKAIGTGP 217 Query: 237 FKFVKQTAGESLQLEAFTDYYQGSPGFKTLVVRVVPAANLTAGLINGDIDVVAMGSIPLS 296 FK+ + +GE ++L +Y+QG+P + LV+RVV +L A L++ DID+ +GSIPL Sbjct: 218 FKYESEISGERMELVRNENYFQGAPDIERLVIRVVDTTSLLANLMSKDIDINVLGSIPLQ 277 Query: 297 DWDTVKNNPDIVASSIPDYSYQYMLFNLSKDTFQDSNVRTAFDKAINKTLIVDNLMKGEG 356 DW + +I +S+P +Y ++ N K + VR A + A+N+ + V++L +G+ Sbjct: 278 DWSAAVEDKNINTTSVPTTNYTMLIINTQK-PYMTKPVRQAINMALNRDIYVNSLYQGQA 336 Query: 357 GVAVGPMPKYHPYYNQSLVPNAYNPDEAKQMLEAAGFDFKREYLLIVPQGNQVREQSALL 416 V P+ PYYN+ V ++ ++AKQ+L F F G + +AL+ Sbjct: 337 VPIVTPISPLSPYYNEK-VSIWFDKEKAKQILIQENFPFDTTLKFYTSAGGDNQRLAALI 395 Query: 417 IQQDLAAIGVKVKIETYDFATLLSMLKNGESD 448 I QDL AIG+KV+I DF+ L++ ++ G D Sbjct: 396 I-QDLEAIGLKVEIIQADFSKLMADMRKGSHD 426 >A8RXV6.1 A8RXV6_9CLOT Putative uncharacterized protein Length = 569 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 134/451 (29%), Positives = 234/451 (51%), Gaps = 23/451 (5%) Query: 11 LVMMLTASLLL--FGCSSNAGNT-AGNASSPPGTEASPQPQSEGGAASGIVTMAIISTWD 67 L + L+A+++L GC+ G+ +G A S G A+ Q QS + IV + + S+ + Sbjct: 24 LALALSAAMVLSSAGCAGKGGSQPSGQAES--GQAAAGQTQSAAAGSGKIVNIGVTSSLN 81 Query: 68 TLNIYNTSGNYGNAVADQL-FERLVFREHGGNVIPRLAKSWAMADDNLSMTFELADNVTW 126 TLN G N A L F LV + LA S A+D + + D W Sbjct: 82 TLNPLLMDGVEMNKYATGLMFLPLVELDQNMEFEGMLADS-VTAEDERNFLVHIDDKAVW 140 Query: 127 HDGEKLTAKDIVFTVQAMTNPAVNN----YYRSAFNVLAGTDADGIAQDPAK--VGVEAV 180 DG +TA D+V+T + +P + N YY V G +G ++ A G+ V Sbjct: 141 SDGTPVTADDVVYTALRLCSPVIGNPAMMYY-----VFEGVGDNGFVEEGADHVEGITRV 195 Query: 181 SDTSVKFTFKEPKAEETILNAFLSFLYVLPEHILGQGDPASINTSGFWNAP-VGAGPFKF 239 D +V+FT K P + T +++ +L LP+H++G D ++ ++ +++ P V +GP+K Sbjct: 196 DDKTVRFTTKAPMSLITFNSSYARYLMPLPKHVIGDIDEKALTSAPWFSRPDVVSGPYKV 255 Query: 240 VKQTAGESLQLEAFTDYYQGSPGFKTLVVRVVPAANLTAGLINGDIDVV--AMGSIPLSD 297 + + EA DY++G+P + L +++V + L AGL +G+ID+ M +IPL D Sbjct: 256 TEFDRDHYVSYEANKDYWKGAPKIERLNIKIVEGSQLYAGLKSGEIDITQNTMSTIPLED 315 Query: 298 WDTVKNNPDIVASSIPDYSYQYMLFNLSKDTFQDSNVRTAFDKAINKTLIVDNLMKGEGG 357 +++V ++ S + Q + N ++ T D+ VR A A+++ +++ L+KG G Sbjct: 316 YESVAALENVEVSYGDPITNQSVFINTARIT--DTKVRQAMLYAVDRNQLLEQLLKGNGE 373 Query: 358 VAVGPMPKYHPYYNQSLVPNAYNPDEAKQMLEAAGFDFKREYLLIVPQGNQVREQSALLI 417 VA G + PY++ +LVP +Y+P++AK +L +G+D + + G+ +A +I Sbjct: 374 VADGFLSSASPYFDSTLVPVSYDPEKAKSLLAQSGWDQSKSIRFCIDSGDSTFVNAASVI 433 Query: 418 QQDLAAIGVKVKIETYDFATLLSMLKNGESD 448 AA+G+K I+T D TL+S +G+ D Sbjct: 434 AAQWAAVGIKADIQTMDINTLMSTASSGDFD 464 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.133 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,995,842,873 Number of extensions: 128130561 Number of successful extensions: 365947 Number of sequences better than 1.0e-05: 6073 Number of HSP's gapped: 356508 Number of HSP's successfully gapped: 6086 Length of query: 497 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 357 Effective length of database: 1,741,754,103 Effective search space: 621806214771 Effective search space used: 621806214771 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)