BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0530.0024.p (293 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C5ESY6.1 C5ESY6_9FIRM ABC-type dipeptide/oligopeptide/nickel tra... 309 2e-82 Q73N81.1 Q73N81_TREDE Oligopeptide/dipeptide ABC transporter, pe... 286 1e-75 A8RJ71.1 A8RJ71_9CLOT Putative uncharacterized protein 276 2e-72 C0FIP8.1 C0FIP8_9CLOT Putative uncharacterized protein 271 5e-71 C1D3H4.1 C1D3H4_DEIDV Putative dipeptide/oligopeptide/nickel ABC... 221 7e-56 >C5ESY6.1 C5ESY6_9FIRM ABC-type dipeptide/oligopeptide/nickel transport system Length = 293 Score = 309 bits (791), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 150/283 (53%), Positives = 198/283 (69%) Query: 11 RKRTVFLNFMKRYCHNKLAXXXXXXXXXXXXXXXFLPPFLQYAEDQIDPLAFSAAPGGSH 70 +K + + + +K++ +KLA FLP L+ D LAFSA PG H Sbjct: 8 KKDSYYRDVLKKFTAHKLAMIGVAIIALEVLLVIFLPMILKLDPYTSDILAFSAKPGPGH 67 Query: 71 LLGTDDVGRDVLSRLLNGGRVSLFVGILSALISVALGIPLGLLAAFFRGKFETVTMRLAD 130 LGTDD GRDV +RL+ GGRVSL VG+LSA+IS+ +G+PLGL+A +++G +ET+ MR AD Sbjct: 68 FLGTDDTGRDVFARLVFGGRVSLLVGLLSAIISLLIGVPLGLIAGYYKGIWETIVMRAAD 127 Query: 131 IFLSFPNIILILFLVSIFGPSXXXXXXXXGVLGWPFFARLMFGTVLSIKEKDYIEGAAAI 190 IF+SFP++IL+L LV++ GPS GVLGW FA+L++G VLS++EK+Y+E A A+ Sbjct: 128 IFMSFPSMILVLVLVAVIGPSVWTVTLVIGVLGWTDFAKLIYGNVLSVREKEYVESAKAV 187 Query: 191 GEKQRTIIFKYILPNAIAPILIQITFRIAGAIILESSLSFLGMGVQPPAASWGNMLYNAQ 250 G K ++ KY++PNA APILI TFR A AII ES+LSFLGMGVQPP ASWGN+LY AQ Sbjct: 188 GTKDLPLLLKYVVPNAFAPILINFTFRTAQAIIQESALSFLGMGVQPPQASWGNILYAAQ 247 Query: 251 SITILSERPWMWXXXXXXXXXXXXSINFVGNGLRDALDPKTRL 293 SIT+LS RPW+W SINFVG+G+RDALD KT++ Sbjct: 248 SITVLSSRPWLWVPPGILLVLTVSSINFVGDGIRDALDSKTKI 290 >Q73N81.1 Q73N81_TREDE Oligopeptide/dipeptide ABC transporter, permease protein Length = 305 Score = 286 bits (732), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 146/286 (51%), Positives = 189/286 (66%) Query: 8 ANSRKRTVFLNFMKRYCHNKLAXXXXXXXXXXXXXXXFLPPFLQYAEDQIDPLAFSAAPG 67 + +K T F +++ +NKLA LP L DP AF++AP Sbjct: 17 SEEKKNTYFNEVVEKLLNNKLAMAGLIFFLLLSLLVIILPFILNLDPYTSDPAAFNSAPT 76 Query: 68 GSHLLGTDDVGRDVLSRLLNGGRVSLFVGILSALISVALGIPLGLLAAFFRGKFETVTMR 127 SH+LGTD +GRD+ +RL+ GGR SL VG++S IS+++G+PLGL+A +++ +E MR Sbjct: 77 RSHILGTDAIGRDLFARLIYGGRTSLMVGVVSTFISLSIGVPLGLIAGYYKKIWEVFIMR 136 Query: 128 LADIFLSFPNIILILFLVSIFGPSXXXXXXXXGVLGWPFFARLMFGTVLSIKEKDYIEGA 187 L DIFLSFP+IILIL LVS+ GPS GVL W FARL++ VLSIKEK+YIE A Sbjct: 137 LGDIFLSFPSIILILVLVSVIGPSIWSVTIVLGVLQWTVFARLIYANVLSIKEKEYIEAA 196 Query: 188 AAIGEKQRTIIFKYILPNAIAPILIQITFRIAGAIILESSLSFLGMGVQPPAASWGNMLY 247 +IG +II KYILPNA PILI +TF +A AI+ ES+LSFLGMGVQPP ASWGNMLY Sbjct: 197 KSIGTSNFSIILKYILPNAFPPILITVTFNVARAILSESALSFLGMGVQPPKASWGNMLY 256 Query: 248 NAQSITILSERPWMWXXXXXXXXXXXXSINFVGNGLRDALDPKTRL 293 +AQSIT+LS W+W SINF G+G+RDALDP+ ++ Sbjct: 257 DAQSITVLSRYYWVWLPPGLCIVLTVLSINFFGDGIRDALDPRLKI 302 >A8RJ71.1 A8RJ71_9CLOT Putative uncharacterized protein Length = 304 Score = 276 bits (706), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 147/280 (52%), Positives = 188/280 (67%), Gaps = 5/280 (1%) Query: 14 TVFLNFMKRYCHNKLAXXXXXXXXXXXXXXXFLPPFLQ---YAEDQIDPLAFSAAPGGSH 70 + F + ++R+C +K A LP L Y D + F +AP H Sbjct: 23 SYFHDVLQRFCAHKPAMVSAFVLTLEIILVIALPYILHLDPYTSDY--EVMFGSAPSALH 80 Query: 71 LLGTDDVGRDVLSRLLNGGRVSLFVGILSALISVALGIPLGLLAAFFRGKFETVTMRLAD 130 LGTDD+GRD+ +R + GGRVSL VGI+SA+IS+A+G+PLGLLA ++RG ET+ MR AD Sbjct: 81 WLGTDDIGRDIFARFIYGGRVSLSVGIISAVISMAVGVPLGLLAGYYRGIAETLIMRCAD 140 Query: 131 IFLSFPNIILILFLVSIFGPSXXXXXXXXGVLGWPFFARLMFGTVLSIKEKDYIEGAAAI 190 +F+SFP ++LIL LVS+ GPS GVLGWP FARL++G VLS +E+DY+E A AI Sbjct: 141 VFMSFPAMVLILVLVSVLGPSVATVTIVIGVLGWPKFARLIYGNVLSAREQDYVEAARAI 200 Query: 191 GEKQRTIIFKYILPNAIAPILIQITFRIAGAIILESSLSFLGMGVQPPAASWGNMLYNAQ 250 G K TI+ KYILPN AP+LI TFR A AII ES+LSFLGMGVQ P ASWGN+LY+AQ Sbjct: 201 GTKDGTILTKYILPNTFAPVLISFTFRAAQAIITESALSFLGMGVQAPQASWGNILYDAQ 260 Query: 251 SITILSERPWMWXXXXXXXXXXXXSINFVGNGLRDALDPK 290 SI++LS+RPW+W INF+G+G RDALD K Sbjct: 261 SISVLSQRPWLWFPPGLALLITVLCINFLGDGARDALDTK 300 >C0FIP8.1 C0FIP8_9CLOT Putative uncharacterized protein Length = 287 Score = 271 bits (693), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 137/286 (47%), Positives = 186/286 (65%) Query: 8 ANSRKRTVFLNFMKRYCHNKLAXXXXXXXXXXXXXXXFLPPFLQYAEDQIDPLAFSAAPG 67 N +K++ F + +KR+ +++LA LP + I P Sbjct: 2 GNLKKQSYFNDVLKRFVNHRLAITGTVVLFLLIVTVTVLPMIIALDPYTIGRGLPYGTPE 61 Query: 68 GSHLLGTDDVGRDVLSRLLNGGRVSLFVGILSALISVALGIPLGLLAAFFRGKFETVTMR 127 LG D GRD +RL+ GGRVSL VG+LS IS+ +G+PLGL+AA++ + V MR Sbjct: 62 KGLPLGLDSTGRDNFARLIYGGRVSLLVGLLSTAISIGIGVPLGLIAAYYGKIADAVIMR 121 Query: 128 LADIFLSFPNIILILFLVSIFGPSXXXXXXXXGVLGWPFFARLMFGTVLSIKEKDYIEGA 187 +ADIF+SFP+IILIL LVSI GPS G++GWP FARL+ G VL+I++K+Y+E A Sbjct: 122 IADIFISFPSIILILVLVSIIGPSMWSVIVIIGIMGWPEFARLIRGNVLAIRQKEYVESA 181 Query: 188 AAIGEKQRTIIFKYILPNAIAPILIQITFRIAGAIILESSLSFLGMGVQPPAASWGNMLY 247 A+G K II +Y+LPNA+API++ TFR+AGAI+ ESSLSFLGMGVQPP ASWGNML Sbjct: 182 RAVGAKDGRIITRYLLPNAVAPIIVAATFRVAGAILQESSLSFLGMGVQPPQASWGNMLN 241 Query: 248 NAQSITILSERPWMWXXXXXXXXXXXXSINFVGNGLRDALDPKTRL 293 AQS+T+L+ RPW+W +NF+G+GLRDALDP+ ++ Sbjct: 242 GAQSLTVLTSRPWVWIPPGLLLVITICCVNFIGDGLRDALDPRMKV 287 >C1D3H4.1 C1D3H4_DEIDV Putative dipeptide/oligopeptide/nickel ABC transporter, permease component Length = 291 Score = 221 bits (562), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 109/241 (45%), Positives = 151/241 (62%) Query: 52 YAEDQIDPLAFSAAPGGSHLLGTDDVGRDVLSRLLNGGRVSLFVGILSALISVALGIPLG 111 + D ID ++ + P H LGTD GRDV +R + GRVSL VG+ S LISV +G LG Sbjct: 50 FKPDDIDLMSRNQPPSSRHWLGTDPTGRDVFARTFSAGRVSLMVGLFSTLISVVVGTILG 109 Query: 112 LLAAFFRGKFETVTMRLADIFLSFPNIILILFLVSIFGPSXXXXXXXXGVLGWPFFARLM 171 LA +F G + V MR DI ++FP+II++L L +I GP G+LGWP ARL+ Sbjct: 110 ALAGYFGGWVDNVIMRFVDIVMTFPSIIVLLTLAAIIGPGIDKTIVIIGLLGWPLAARLV 169 Query: 172 FGTVLSIKEKDYIEGAAAIGEKQRTIIFKYILPNAIAPILIQITFRIAGAIILESSLSFL 231 +LS++E ++I A A+G R I+ K+ LPNA+ +++ ++ +A AI+ E+ LSFL Sbjct: 170 RAKLLSVRELEFIAAANALGATDRRILLKHALPNAVDVLVVFVSLGVASAILTEAGLSFL 229 Query: 232 GMGVQPPAASWGNMLYNAQSITILSERPWMWXXXXXXXXXXXXSINFVGNGLRDALDPKT 291 G+GVQPP ASWGN+L A+ IT+L PW W + NF+G+GLRDALDPK Sbjct: 230 GLGVQPPQASWGNLLSTAREITVLEAYPWQWMPAGALIVLTVLATNFLGDGLRDALDPKA 289 Query: 292 R 292 R Sbjct: 290 R 290 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.144 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,452,241,431 Number of extensions: 53299913 Number of successful extensions: 201559 Number of sequences better than 1.0e-05: 6298 Number of HSP's gapped: 196587 Number of HSP's successfully gapped: 6349 Length of query: 293 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 159 Effective length of database: 1,798,280,193 Effective search space: 285926550687 Effective search space used: 285926550687 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)