BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0530.0023.p (167 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A8RJ70.1 A8RJ70_9CLOT Putative uncharacterized protein 212 8e-54 Q73N80.1 Q73N80_TREDE Oligopeptide/dipeptide ABC transporter, pe... 207 4e-52 C5ESY5.1 C5ESY5_9FIRM Oligopeptide transport system permease pro... 202 7e-51 A8RXW1.1 A8RXW1_9CLOT Putative uncharacterized protein 197 3e-49 C0FIP9.1 C0FIP9_9CLOT Putative uncharacterized protein 194 3e-48 >A8RJ70.1 A8RJ70_9CLOT Putative uncharacterized protein Length = 321 Score = 212 bits (540), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 95/167 (56%), Positives = 131/167 (78%) Query: 1 VLLYLFSVKLQLLPIGGMYTVGTANSFLSLLAHLIMPCLVLSFHMMGTLIQFTRSSMLEV 60 VL+Y F +K++L P GMY ++ HL++P +VL+ +G+LI+ R SMLEV Sbjct: 155 VLIYFFCIKVKLFPTSGMYDSSGVRTWPMFFHHLVLPAVVLAIQQIGSLIRQCRGSMLEV 214 Query: 61 MREDYVRTAKAKGLQERVLIVRHVLRNSLIPVATYLGMEIPLLLGGAVVTEQVFSWPGIG 120 +++DYVRTA+AKGL E ++VRH LRN+ IP+ ++ GM+IP L+GGAVVTEQ+F WPG+G Sbjct: 215 LQDDYVRTARAKGLHEPSVLVRHALRNAWIPLVSWFGMQIPFLIGGAVVTEQIFGWPGLG 274 Query: 121 KLMIQSISARDYPVIMGVTVLVALAVLIFNLITDLVYGLLDPRIRYD 167 LM+QSI+ARDYPVIMG+TV++A+ VL+ NL+ DL+YGLLDPRIRYD Sbjct: 275 SLMVQSINARDYPVIMGITVVIAIVVLLGNLLVDLMYGLLDPRIRYD 321 >Q73N80.1 Q73N80_TREDE Oligopeptide/dipeptide ABC transporter, permease protein Length = 317 Score = 207 bits (526), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 96/167 (57%), Positives = 130/167 (77%) Query: 1 VLLYLFSVKLQLLPIGGMYTVGTANSFLSLLAHLIMPCLVLSFHMMGTLIQFTRSSMLEV 60 +L+Y ++KL+LLP GG++ + L LL H+I+P LVLSF +G+ +++ R SMLEV Sbjct: 151 ILIYFCAIKLRLLPSGGLFDASGKKTTLMLLKHMILPTLVLSFQQIGSWMRYMRGSMLEV 210 Query: 61 MREDYVRTAKAKGLQERVLIVRHVLRNSLIPVATYLGMEIPLLLGGAVVTEQVFSWPGIG 120 ++EDY+ TA+AKGL+ + H L+NSLIP+ T +GM IP L+GGAVVTEQVF WPGIG Sbjct: 211 LQEDYITTARAKGLKRNQIYYTHALKNSLIPIITVVGMSIPSLVGGAVVTEQVFGWPGIG 270 Query: 121 KLMIQSISARDYPVIMGVTVLVALAVLIFNLITDLVYGLLDPRIRYD 167 LM+Q+I+A+DYPVIMG+TV +++AVLI NLITDL YGL+DPRI Y Sbjct: 271 TLMVQAINAKDYPVIMGITVNISIAVLIANLITDLAYGLVDPRISYK 317 >C5ESY5.1 C5ESY5_9FIRM Oligopeptide transport system permease protein appB Length = 317 Score = 202 bits (514), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 96/165 (58%), Positives = 131/165 (79%), Gaps = 1/165 (0%) Query: 1 VLLYLFSVKLQLLPIGGMYTVGTANSFLSLLAHLIMPCLVLSFHMMGTLIQFTRSSMLEV 60 V++Y+F+VKL++LP+GGMY G ++ S HLI+PCLVL+ +G++++ TR SM+EV Sbjct: 151 VMIYVFAVKLRVLPMGGMYDAGV-HTVGSAAQHLILPCLVLTIFNIGSILRQTRGSMMEV 209 Query: 61 MREDYVRTAKAKGLQERVLIVRHVLRNSLIPVATYLGMEIPLLLGGAVVTEQVFSWPGIG 120 EDY+RTA+AKGL E +++ H LRN+LIPV T L IP + GGAVV EQVFSWPG+G Sbjct: 210 FSEDYIRTARAKGLTEPRVVIIHGLRNALIPVVTVLSTMIPFMFGGAVVAEQVFSWPGLG 269 Query: 121 KLMIQSISARDYPVIMGVTVLVALAVLIFNLITDLVYGLLDPRIR 165 LM+QSI+ARDYP+IMG+TV++A AVLI N++TD+ Y LLDP+IR Sbjct: 270 SLMVQSINARDYPMIMGITVVIAAAVLIGNVLTDIAYSLLDPKIR 314 >A8RXW1.1 A8RXW1_9CLOT Putative uncharacterized protein Length = 315 Score = 197 bits (501), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 89/166 (53%), Positives = 130/166 (78%) Query: 2 LLYLFSVKLQLLPIGGMYTVGTANSFLSLLAHLIMPCLVLSFHMMGTLIQFTRSSMLEVM 61 L+YLF+V L +LP GGM T+GTA + AH++MP LVLS M GT I++ RS+MLE++ Sbjct: 150 LVYLFTVNLGILPSGGMTTLGTAGGAADVAAHMVMPVLVLSVSMAGTNIRYIRSAMLEIL 209 Query: 62 REDYVRTAKAKGLQERVLIVRHVLRNSLIPVATYLGMEIPLLLGGAVVTEQVFSWPGIGK 121 ++DY+RTA+AKG+ R++I +H LRN+L+P+ T +GM+IP+L GGAV+ EQ+FSWPG+G Sbjct: 210 QQDYLRTARAKGIGRRMVIYKHALRNALVPIVTVIGMQIPVLFGGAVIVEQLFSWPGLGL 269 Query: 122 LMIQSISARDYPVIMGVTVLVALAVLIFNLITDLVYGLLDPRIRYD 167 + + +I RDYPVIMGV +L A+ VL NL+TD++Y +++P I+YD Sbjct: 270 MTMSAILNRDYPVIMGVCLLSAVVVLAANLVTDILYAIVNPAIQYD 315 >C0FIP9.1 C0FIP9_9CLOT Putative uncharacterized protein Length = 317 Score = 194 bits (492), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 86/167 (51%), Positives = 127/167 (76%) Query: 1 VLLYLFSVKLQLLPIGGMYTVGTANSFLSLLAHLIMPCLVLSFHMMGTLIQFTRSSMLEV 60 +L+Y+F+VKL+LLP GGMY +NS ++ HLI+P ++ +G +++ RS+MLEV Sbjct: 151 ILIYIFAVKLKLLPFGGMYDSSGSNSIGVVIRHLILPAAAIAIPEIGKVMRHVRSNMLEV 210 Query: 61 MREDYVRTAKAKGLQERVLIVRHVLRNSLIPVATYLGMEIPLLLGGAVVTEQVFSWPGIG 120 M EDYVRTA+AKG++E +++ H RN+LIP+ T L IP ++GG+VV E+VF WPG+G Sbjct: 211 MNEDYVRTARAKGVRESAVVIVHAFRNTLIPIVTVLSGSIPFMIGGSVVVEKVFGWPGLG 270 Query: 121 KLMIQSISARDYPVIMGVTVLVALAVLIFNLITDLVYGLLDPRIRYD 167 LMI SI++RDYPVIMG++V++A+ VL+ NL+ D++Y LDPRI Y+ Sbjct: 271 TLMINSITSRDYPVIMGISVVIAIVVLVTNLLVDILYAYLDPRITYN 317 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.145 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 838,263,841 Number of extensions: 28880041 Number of successful extensions: 143166 Number of sequences better than 1.0e-05: 6067 Number of HSP's gapped: 142160 Number of HSP's successfully gapped: 6067 Length of query: 167 Length of database: 3,060,696,203 Length adjustment: 125 Effective length of query: 42 Effective length of database: 1,883,069,328 Effective search space: 79088911776 Effective search space used: 79088911776 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 126 (53.1 bits)