BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0530.0022.p
         (160 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C0FIP9.1 C0FIP9_9CLOT Putative uncharacterized protein                125   2e-27
C5ESY5.1 C5ESY5_9FIRM Oligopeptide transport system permease pro...   120   3e-26
C0DAD0.1 C0DAD0_9CLOT Putative uncharacterized protein                118   2e-25
A8RJ70.1 A8RJ70_9CLOT Putative uncharacterized protein                115   1e-24
A8RXW1.1 A8RXW1_9CLOT Putative uncharacterized protein                110   5e-23

>C0FIP9.1 C0FIP9_9CLOT Putative uncharacterized protein
          Length = 317

 Score =  125 bits (313), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 64/130 (49%), Positives = 88/130 (67%)

Query: 2   MKTYVLRRLLIALPTFLGITILVFFVSYLASGSPLELLLSNQNISEAEIERQRIKLGLDQ 61
           M  Y++RR  +A+ TF GITILV+F+S LA GSPL+ LL++  +++ EI R+  +LGLDQ
Sbjct: 1   MTNYIIRRTALAVITFFGITILVYFMSTLAPGSPLDALLADPGMTKEEIARRSAELGLDQ 60

Query: 62  PVYMQYFSWLGNMLTGNFGESYRTMEAVTSMILKGLGATSILVVASVLLACLIAIPLGIQ 121
           PVY+QY SWL   L GN G SY +   V+ MI + +GAT  L V ++LL+ L+ IPLG+ 
Sbjct: 61  PVYIQYLSWLKEFLHGNMGFSYTSYRPVSDMITERIGATLSLTVTAILLSYLVGIPLGLI 120

Query: 122 SARHQSKLWD 131
           SA     L D
Sbjct: 121 SALKPYSLRD 130


>C5ESY5.1 C5ESY5_9FIRM Oligopeptide transport system permease protein appB
          Length = 317

 Score =  120 bits (302), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 59/130 (45%), Positives = 86/130 (66%)

Query: 2   MKTYVLRRLLIALPTFLGITILVFFVSYLASGSPLELLLSNQNISEAEIERQRIKLGLDQ 61
           M  Y ++RLL+A+PTF GIT+LV+ +S +A GSPLE+L+++   ++  +E  + ++GL+ 
Sbjct: 1   MFKYTVKRLLVAIPTFFGITVLVYLISAMAPGSPLEMLMADPMATKESMEALKTQMGLND 60

Query: 62  PVYMQYFSWLGNMLTGNFGESYRTMEAVTSMILKGLGATSILVVASVLLACLIAIPLGIQ 121
           P  +QYF WL  ML GN G SYR    V   +L+ LG T IL ++S +L+ LIA+PLGI 
Sbjct: 61  PAIIQYFRWLVAMLQGNLGISYRNSLPVLGQVLEKLGPTLILTLSSTVLSVLIAVPLGIM 120

Query: 122 SARHQSKLWD 131
           SA      WD
Sbjct: 121 SAYKPYSAWD 130


>C0DAD0.1 C0DAD0_9CLOT Putative uncharacterized protein
          Length = 323

 Score =  118 bits (295), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/130 (47%), Positives = 90/130 (69%), Gaps = 2/130 (1%)

Query: 2   MKTYVLRRLLIALPTFLGITILVFFVSYLASGSPLELLLSNQNISEAEIERQRIKLGLDQ 61
           M  Y+L+R+LIA+PT +GITI+ + +  +A G+PLE+L     IS+A IE Q+  LGLDQ
Sbjct: 9   MGKYILKRILIAIPTLIGITIIDYAIMCMA-GNPLEML-QGARISQAAIEAQKAALGLDQ 66

Query: 62  PVYMQYFSWLGNMLTGNFGESYRTMEAVTSMILKGLGATSILVVASVLLACLIAIPLGIQ 121
           P Y+QYF WL N+L GN G S +T ++V++MI   LG T +L+  S++++ L+A+P GI 
Sbjct: 67  PFYIQYFVWLSNLLQGNMGYSVKTYQSVSAMIGSHLGPTLLLMGVSLIVSLLMAVPAGIY 126

Query: 122 SARHQSKLWD 131
           SA HQ    D
Sbjct: 127 SAIHQYSKGD 136


>A8RJ70.1 A8RJ70_9CLOT Putative uncharacterized protein
          Length = 321

 Score =  115 bits (289), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/131 (46%), Positives = 86/131 (65%)

Query: 5   YVLRRLLIALPTFLGITILVFFVSYLASGSPLELLLSNQNISEAEIERQRIKLGLDQPVY 64
           Y+ +RLL A+PTFLGITILV+ V+ LA  SPLE+L ++   +  E+ R+  +LGLDQPV 
Sbjct: 8   YIAKRLLTAIPTFLGITILVYVVASLAPSSPLEILFNDPYATAEEMARKSKELGLDQPVI 67

Query: 65  MQYFSWLGNMLTGNFGESYRTMEAVTSMILKGLGATSILVVASVLLACLIAIPLGIQSAR 124
           +QY  WL  ++ GN G S RT   V  MIL+ +G T IL  +++ L  +IA+PLGI SA 
Sbjct: 68  IQYIRWLVQLVQGNMGMSIRTNGQVLDMILERIGPTLILTGSAMALTIIIALPLGIMSAY 127

Query: 125 HQSKLWDNLAA 135
                WD +++
Sbjct: 128 KPYSGWDYISS 138


>A8RXW1.1 A8RXW1_9CLOT Putative uncharacterized protein
          Length = 315

 Score =  110 bits (274), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 62/150 (41%), Positives = 93/150 (62%), Gaps = 4/150 (2%)

Query: 2   MKTYVLRRLLIALPTFLGITILVFFVSYLASGSPLELLLSNQNISEAEIERQRIKLGLDQ 61
           M  Y+L+R+LIA+PT LGIT++ + +   A GSPLE+L     IS+  I  +   +GLD+
Sbjct: 1   MTKYILKRILIAIPTLLGITMIDYAIMCFA-GSPLEML-QGARISQEAIAAKEAAMGLDK 58

Query: 62  PVYMQYFSWLGNMLTGNFGESYRTMEAVTSMILKGLGATSILVVASVLLACLIAIPLGIQ 121
           P Y+QYF WLG +L+GN G S ++ EAV++MI   LG T +L+  S++++ ++++P GI 
Sbjct: 59  PFYIQYFIWLGQLLSGNMGYSVKSYEAVSAMIGSHLGPTLLLMGVSLIVSLIMSVPAGIY 118

Query: 122 SARHQSKLWDNLAAVXXXXSWPPQRPAFLL 151
           SA HQ    D   AV     +    P F L
Sbjct: 119 SAIHQYSKGDY--AVVTASFFGSSIPGFFL 146


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.328    0.140    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 853,860,392
Number of extensions: 29616357
Number of successful extensions: 125226
Number of sequences better than 1.0e-05: 4253
Number of HSP's gapped: 122740
Number of HSP's successfully gapped: 4253
Length of query: 160
Length of database: 3,060,696,203
Length adjustment: 121
Effective length of query: 39
Effective length of database: 1,920,753,388
Effective search space: 74909382132
Effective search space used: 74909382132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 125 (52.8 bits)