BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0530.0016.p (195 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q893H0.1 Q893H0_CLOTE Transcriptional regulator 159 1e-37 A8SFQ2.1 A8SFQ2_9FIRM Putative uncharacterized protein 137 6e-31 C1IB73.1 C1IB73_9CLOT Transcriptional regulator 131 3e-29 Q8DVH5.1 Q8DVH5_STRMU Putative transcriptional regulator 128 3e-28 B2TM68.1 B2TM68_CLOBB Transcriptional regulator 125 2e-27 >Q893H0.1 Q893H0_CLOTE Transcriptional regulator Length = 185 Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 79/185 (42%), Positives = 112/185 (60%), Gaps = 6/185 (3%) Query: 7 SQVTKNALAHSLKKLMLTKPLHKITIQQLTDDCGVTRHTFYNHFQDIYELLGWVYQTEII 66 S +TK LA+SLKKLM KPL KITI+ +T DC V R TFY HFQDIY+LL W+Y+TE I Sbjct: 2 SLMTKKELANSLKKLMSIKPLDKITIKDITADCNVNRQTFYYHFQDIYDLLDWIYKTEAI 61 Query: 67 EDLEQYRNCAGWKQGFLSVLYYTQNNKTICLNTFHSLGREHLESFLXXXXXXXXXXXXXX 126 + + +Y+ W++GFL + Y +NK C+N+ HSLGR+HL++FL Sbjct: 62 DGISEYKTYKTWQKGFLMIFQYIIHNKEFCINSLHSLGRDHLDNFLYKFTFDLLMEVINE 121 Query: 127 LDAREPERADV--QAKQEIADFYTLAILGQVIHWLKAGADSDPAWIVAKVARIMDGSISR 184 + E DV + K+ IA+FYT A + +I W+K G P I+ K+ +++G I + Sbjct: 122 V----SEGMDVLNEDKKFIANFYTYAFVNLLIMWMKNGMKESPEIIIEKLNTLIEGDIEK 177 Query: 185 GLANY 189 L Y Sbjct: 178 ALKKY 182 >A8SFQ2.1 A8SFQ2_9FIRM Putative uncharacterized protein Length = 191 Score = 137 bits (345), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 73/191 (38%), Positives = 103/191 (53%), Gaps = 6/191 (3%) Query: 7 SQVTKNALAHSLKKLMLTKPLHKITIQQLTDDCGVTRHTFYNHFQDIYELLGWVYQTEII 66 SQ TK AL S KKL+L KPL+KITI +T+DCGV R TFY HF+DIY+L+ W+ + Sbjct: 2 SQTTKRALEASFKKLLLEKPLNKITINDITEDCGVNRMTFYYHFKDIYDLVDWILAEDAA 61 Query: 67 EDLEQYRNCAGWKQGFLSVLYYTQNNKTICLNTFHSLGREHLESFLXXXXXXXXXXXXXX 126 + +E R W + +L VL Q+NKT+ LN + S+GRE +E +L Sbjct: 62 KAMEGRRGFGTWSEAYLDVLRQLQDNKTLVLNVYRSVGREQVEQYLYRLLDPILKDFAD- 120 Query: 127 LDAREPERADVQ--AKQEIADFYTLAILGQVIHWLKAGADSDPAWIVAKVARIMDGSISR 184 RE VQ KQ + DFY A++G + W + DP +V +V+ ++ G R Sbjct: 121 ---RECHDITVQDADKQFVVDFYKYALVGMTLEWTRRDMRGDPKKMVERVSTMIHGDFRR 177 Query: 185 GLANYLTPSYK 195 L + S K Sbjct: 178 ALCRLSSGSLK 188 >C1IB73.1 C1IB73_9CLOT Transcriptional regulator Length = 188 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 72/186 (38%), Positives = 106/186 (56%), Gaps = 2/186 (1%) Query: 4 MSYSQVTKNALAHSLKKLMLTKPLHKITIQQLTDDCGVTRHTFYNHFQDIYELLGWVYQT 63 MS S TK +LA SLKKLM + PLHKI+++ + DC + R TFY HF DIYEL+ W+Y+T Sbjct: 1 MSSSLQTKKSLAKSLKKLMRSTPLHKISVKDVVKDCNLNRQTFYYHFHDIYELVEWIYKT 60 Query: 64 EIIEDLEQYRNCAGWKQGFLSVLYYTQNNKTICLNTFHSLGREHLESFLXXXXXXXXXXX 123 E IE + +Y++ W GF + Y + NK C NT +SL R HL+ +L Sbjct: 61 EAIESIAEYKSYNTWVDGFYKIFLYIEGNKEFCYNTLNSLSRTHLDMYLFSVINDLLMGV 120 Query: 124 XXXLDAREPERADVQAKQEIADFYTLAILGQVIHWLKAGADSDPAWIVAKVARIMDGSIS 183 + + + ++ K+ +ADFYT A G VI W+K G DP ++ K+ +++G+ Sbjct: 121 INEISSDMSIK--IEDKKFMADFYTHAFAGLVIQWMKDGMKEDPKVLIEKLKELIEGNFV 178 Query: 184 RGLANY 189 L Y Sbjct: 179 IALKRY 184 >Q8DVH5.1 Q8DVH5_STRMU Putative transcriptional regulator Length = 188 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 66/183 (36%), Positives = 102/183 (55%), Gaps = 2/183 (1%) Query: 7 SQVTKNALAHSLKKLMLTKPLHKITIQQLTDDCGVTRHTFYNHFQDIYELLGWVYQTEII 66 SQ TK AL SLK L+L KPL KITIQ +TDDCG++R TFY HF+DIY+L+ WV Sbjct: 2 SQTTKKALEDSLKHLLLQKPLPKITIQDITDDCGISRMTFYYHFKDIYDLIEWVCIENAS 61 Query: 67 EDLEQYRNCAGWKQGFLSVLYYTQNNKTICLNTFHSLGREHLESFLXXXXXXXXXXXXXX 126 + L + ++ W++G L + NK +N +HS+ RE +E++L Sbjct: 62 QALGENKDYETWEEGLLRIFNAVIANKPFIMNVYHSVSREQIETYLYTLTYDLMINVVN- 120 Query: 127 LDAREPERADVQAKQEIADFYTLAILGQVIHWLKAGADSDPAWIVAKVARIMDGSISRGL 186 + + + + + K IADFY A++G ++ W++ DP IV + ++ G+I L Sbjct: 121 -EKAKGLKVNDEEKNFIADFYKFALVGLMLDWIRKDMKEDPRIIVKHLDSLVHGNIVTAL 179 Query: 187 ANY 189 +Y Sbjct: 180 HHY 182 >B2TM68.1 B2TM68_CLOBB Transcriptional regulator Length = 189 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 70/191 (36%), Positives = 101/191 (52%), Gaps = 3/191 (1%) Query: 1 MQAMSYSQVTKNALAHSLKKLMLTKPLHKITIQQLTDDCGVTRHTFYNHFQDIYELLGWV 60 M ++ S++TK A SLKK M KPL+KITIQ+++ DCG+ R TFY HF DIY+L+GW+ Sbjct: 1 MSSLVISKMTKELFATSLKKYMKRKPLNKITIQEISQDCGLNRRTFYRHFSDIYDLVGWI 60 Query: 61 YQTEIIEDLEQYRNCAGWKQGFLSVLYYTQNNKTICLNTFHSLGREHLESFLXXXXXXXX 120 YQTEI + QY + WK L + Y NK I ++LE FL Sbjct: 61 YQTEIENHISQYIDFPHWKDALLDLFNYFLFNKEISHFIVKFSDHKYLEDFLYGAILKFV 120 Query: 121 XXXXXXLDAREPERADVQAKQEIADFYTLAILGQVIHWLKAGADSDPAWIVAKVARIMDG 180 P K+ +++FY L+ +I W+ G + P IV ++ I+ G Sbjct: 121 QPVIQK--ESYPLALSQHKKEFLSNFYALSFTSILIQWINKGMEESPDEIVENISLILKG 178 Query: 181 SISRGL-ANYL 190 SI+R L ++YL Sbjct: 179 SINRILDSDYL 189 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.134 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,064,325,199 Number of extensions: 38432161 Number of successful extensions: 83213 Number of sequences better than 1.0e-05: 242 Number of HSP's gapped: 83085 Number of HSP's successfully gapped: 242 Length of query: 195 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 67 Effective length of database: 1,854,806,283 Effective search space: 124272020961 Effective search space used: 124272020961 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)