BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0530.0014.p (528 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K886.1 B3K886_9BACI RNA polymerase sigma factor, sigma-70 family 560 e-157 B4AYH6.1 B4AYH6_9CHRO Putative uncharacterized protein 220 3e-55 B0CBE1.1 B0CBE1_ACAM1 Putative uncharacterized protein 128 1e-27 C0QMF0.1 C0QMF0_DESAH Putative uncharacterized protein 127 3e-27 A4AS49.1 A4AS49_9FLAO Putative uncharacterized protein 126 5e-27 >B3K886.1 B3K886_9BACI RNA polymerase sigma factor, sigma-70 family Length = 524 Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust. Identities = 282/523 (53%), Positives = 356/523 (68%), Gaps = 6/523 (1%) Query: 1 MRQWVEKARQGDAEAFAQLMAHCRGMAYAVSYDMLKDVHLAEDAVQEAFLEAYLNLQKLS 60 M QW+E+AR+G AEA L+ H GMA AV+YD L+D HLAEDAVQEAF EA+ NL KL Sbjct: 1 MIQWIEEARRGSAEAQESLVRHFTGMALAVAYDKLQDSHLAEDAVQEAFTEAFANLHKLQ 60 Query: 61 EPAAFPGWFRTIVVRQCQRTLRRKRHPLLPLDEALQGLQNEPGAADILERKEAEQVLQSS 120 +P FPGWF+ IV RQC R LRRK+ PL E + ++ ++E++E L ++ Sbjct: 61 DPRRFPGWFKVIVERQCYRDLRRKQLQTFPLHEIELPMGDQRSLESVVEKRELIGQLHAT 120 Query: 121 VAALSAKLRVPVQLFYFYGYSLQEISGYLGTPVQTLKKRLHDARQKLKGTLPVADLASVF 180 +A L + +R+ VQL+YF GY+L+EIS YL + LKKRL DAR+KLK TL VAD SVF Sbjct: 121 IADLPSGMRIAVQLYYFQGYNLREISQYLDISLPALKKRLFDARRKLKNTLHVADFVSVF 180 Query: 181 NLLYEGGGKMLHIVNGDVVGNMLKHGIVQGEVLVWREIYSSGPVFADLSGSXXXXXXXXV 240 LYEGG +MLHIVNGD VG+ LK G +QG++LVWRE+YS GPV+ + Sbjct: 181 TDLYEGGKRMLHIVNGDSVGDKLKQGNIQGDILVWRELYSFGPVYTKMDEPDHRRTRAQY 240 Query: 241 LEATLGIPAGEYMTSCEEQERKLREYAQYDEVVLWFEHDLFDQSMLAYLLHWFKGQKLGR 300 LE TLGIP EY+ +CE QERKL+++ +YDEVVLWFEHDLFDQ+MLAYLLHWFK Q LG Sbjct: 241 LEQTLGIPQKEYIGTCESQERKLQDFRKYDEVVLWFEHDLFDQTMLAYLLHWFKEQSLGN 300 Query: 301 TKLSLLCIGEFPGIERFHGLGQLTPAQLGTLSGTWRTIGRPEIELGSELWQAYASPDPTR 360 T+LSLLCIG +PGIE F GLGQL+ QL TLSGTW IG E+ LGS LW+AYAS P + Sbjct: 301 TRLSLLCIGAYPGIELFRGLGQLSTEQLETLSGTWHAIGDEELMLGSMLWEAYASDLPEK 360 Query: 361 MADLLDQKNAELAASGLPFASEAFRTHLMRLPSVHNGLGIVEQATFDALASGAHTPLELF 420 Q+ E+ +S LPFA +AF HL RLPSV +GLGI+EQ T +A+A G HTP ELF Sbjct: 361 -----HQRMLEMDSSALPFARDAFEAHLARLPSVSHGLGIIEQTTLEAVAGGIHTPYELF 415 Query: 421 RQVTDTLHVLGMGDLEYWKVLRALTAGEHPLLHIEGVEGYTDFR-QIPEFLNRRVAATAL 479 R V D LH LGMGDLE+W L + G LL I+G + DF+ +P F R + T+L Sbjct: 416 RTVGDRLHTLGMGDLEFWYYLAKMIEGPDSLLVIDGTALFPDFKLAVPHFQERVLQVTSL 475 Query: 480 GQQVQEGAADRVLVQGIDEWYGGLHLQGREVPWRWDTEAEQLV 522 G +V G D ID+W GGL ++G++ WRW+ E + +V Sbjct: 476 GHEVLAGKTDYACAATIDKWVGGLQVRGKDPLWRWNPERKSVV 518 >B4AYH6.1 B4AYH6_9CHRO Putative uncharacterized protein Length = 334 Score = 220 bits (560), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 120/336 (35%), Positives = 178/336 (52%), Gaps = 9/336 (2%) Query: 190 MLHIVNGDVVGNMLKHGIVQGEVLVWREIYSSGPVFADLSGSXXXXXXXXVLEATLG-IP 248 MLHI NGD N++K + G++L WR++ GPV A LS L G + Sbjct: 1 MLHITNGDCAANLIKQTGLPGDILAWRDMLYEGPVPAALSSFELLNVRAEFLAQWNGWVT 60 Query: 249 AGEYMTSCEEQERKLREYAQYDEVVLWFEHDLFDQSMLAYLLHWFKGQKLGRTKLSLLCI 308 E +T ++ L + +Y ++LWFEHDL+DQ L +L+WF+ Q L T+LSL+CI Sbjct: 61 KEEVLTQFITRDETLANFHKYSHIILWFEHDLYDQLQLIQILNWFQKQSLDSTELSLICI 120 Query: 309 GEFPGIERFHGLGQLTPAQLGTLSGTWRTIGRPEIELGSELWQAYASPDPTRMADLLDQK 368 FPGIE F GLGQL P Q+ +L T + + ++ L + W A+ SP+P+ + + L + Sbjct: 121 NHFPGIESFKGLGQLNPEQMRSLYETRQPVSTEQLLLAASAWVAFCSPNPSAIEEFLKRD 180 Query: 369 NAELAASGLPFASEAFRTHLMRLPSVHNGLGIVEQATFDALASGAHTPLELFRQVTDTLH 428 + LPF A +L PS+ NGL ++ A+ +G + E+FRQ D Sbjct: 181 -----INALPFLRNALTRYLEDFPSIFNGLSRTQKQILSAVETGIKSFSEIFRQNIDIED 235 Query: 429 VLGMGDLEYWKVLRALTAGEHPLLHIEGVEGYTDFRQIP---EFLNRRVAATALGQQVQE 485 GD++ W L L++ + PLL E Q P EFL ++V T+ G+ V + Sbjct: 236 YFFPGDIDVWNYLYQLSSSDDPLLIGVDRELLAFPWQCPTKEEFLRQKVQLTSSGRNVLK 295 Query: 486 GAADRVLVQGIDEWYGGLHLQGREVPWRWDTEAEQL 521 G D + + GID W GG+HLQ + WRWD + QL Sbjct: 296 GQTDWININGIDCWKGGVHLQNKTHLWRWDEQNHQL 331 >B0CBE1.1 B0CBE1_ACAM1 Putative uncharacterized protein Length = 431 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 91/338 (26%), Positives = 148/338 (43%), Gaps = 12/338 (3%) Query: 185 EGGGKMLHIVNGDVVGNMLKHGIVQGEVLVWREIYSSGPVFADLSGSXXXXXXXXVLEAT 244 + LHI G + L+ G+ L + + + GPV + + S + Sbjct: 102 DADCSTLHIRCGSDLEQRLQQAGFVGDYLAFTDPFCQGPVQSLTNRSEYIQRRAEFMATA 161 Query: 245 LGIPAGEYMTSCEEQERKLREYAQYDEVVLWFEHDLFDQSMLAYLLHWFKGQKLGRTKLS 304 + + L+ +Y ++LWFE D +DQ L+YLLH+F+ + KL Sbjct: 162 YEMELEVIHDRLHTEYHHLQASHRYPRILLWFEADSYDQLSLSYLLHYFRYELGDSQKLD 221 Query: 305 LLCIGEFPGIERFHGLGQLTPAQLGTLSGTWRTIGRPEIELGSELWQAYASPDPTRMADL 364 L+CI FPGI F GLGQL L L + + ++ L WQA +P P + + Sbjct: 222 LICIDSFPGIRCFRGLGQLPLEALPLLWSQRQPVTAEQMHLCDRTWQALTAPSPEDLWSI 281 Query: 365 LDQKNAELAASGLPFASEAFRTHLMRLPSVHNGLGIVEQATFDALASGAHTPLELFRQVT 424 + ++L A G A HL LP +GL + E+ T +A G +LF+ + Sbjct: 282 ATEDTSQLPALG-----PALLRHLQELPWAEDGLSLTERLTLTIVAEGPCLGQDLFQMLV 336 Query: 425 DTLHVLG-MGDLEYWKVLRALTAGEHPLLHIEGVEGYTDFRQIPEFLNRRVAATALGQQV 483 + L +GD YW VL+ L G HPLL ++ + ++P + R T LG + Sbjct: 337 NEREPLPYLGDTMYWFVLQQLLNGPHPLLTVQ-----PETMELP-WSQRHFDITPLGLAL 390 Query: 484 QEGAADRVLVQGIDEWYGGLHLQGREVPWRWDTEAEQL 521 +Q D W GG+ ++ + W+W+ + L Sbjct: 391 LAQTQHWRSLQTCDRWLGGVLIRPNQPCWQWNQTTQTL 428 >C0QMF0.1 C0QMF0_DESAH Putative uncharacterized protein Length = 295 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 84/272 (30%), Positives = 126/272 (46%), Gaps = 10/272 (3%) Query: 188 GKMLHIVNGDVVGNMLKHGIVQGEVLVWREIYSSGPVFADLSGSXXXXXXXXVLE--ATL 245 K+ HI +GD+ G L + GE+ VW +I GP LE Sbjct: 2 SKVFHITSGDIAGENLAKAGLPGEIFVWHDILYDGPRQPGWPSENILKARSLFLEEFTAG 61 Query: 246 GIPAGEYMTSCEEQERKLREYAQYDEVVLWFEHDLFDQSMLAYLLHWFKGQKLGRTKLSL 305 G+ + + Q +KL E + +++LWF+ LFDQSML++LL + G K L Sbjct: 62 GLDRDYILKTLHNQYQKLAEAGSHGKIMLWFDACLFDQSMLSHLLACLALK--GIQKAEL 119 Query: 306 LCIGEFPGIERFHGLGQLTPAQLGTLSGTWRTIGRPEIELGSELWQAYASPDPTRMADLL 365 LCI FPGIE FHGLGQL P Q +L + I + + + +A+A+ D + L Sbjct: 120 LCINSFPGIEPFHGLGQLQPEQFASLYNKRQPIANEQFRFAAIVDKAFATQDTALLTKL- 178 Query: 366 DQKNAELAASGLPFASEAFRTHLMRLPSVHNGLGIVEQATFDALASGAHTPLELFRQV-T 424 +++ LP+ A L P GLG +E +A+ +G TP ++F+ V T Sbjct: 179 ----SQMVNPPLPWTPAAVTRWLQEQPDSITGLGRLESLALEAIQNGCETPDKIFQSVST 234 Query: 425 DTLHVLGMGDLEYWKVLRALTAGEHPLLHIEG 456 + GD W + L + PL+ IEG Sbjct: 235 ADIPPHFWGDTTLWTKINGLADRDPPLIGIEG 266 >A4AS49.1 A4AS49_9FLAO Putative uncharacterized protein Length = 310 Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 71/256 (27%), Positives = 120/256 (46%), Gaps = 7/256 (2%) Query: 190 MLHIVNGDVVGNMLKHGIVQGEVLVWREIYSSGPVFADLSGSXXXXXXXXVLEATLGIPA 249 +LHI NGD + LK ++G+++ WRE+ G ++ L + Sbjct: 4 LLHITNGDSLTERLKSLDLKGDIITWREMLCEGKTLTNVGSETFWKTRFEFLNKNYKVSK 63 Query: 250 GEYMTSCEEQERKLREYAQYDEVVLWFEHDLFDQSMLAYLLHWFKGQKLGRTKLSLLCIG 309 ++ ++ R L + Q D +VLWFE+DLF Q + ++ W K + +SL+C G Sbjct: 64 SWFIEKTLKEYRSLCNHKQQDNIVLWFEYDLFCQVNMLAVISWLKTHR-KYANISLVCSG 122 Query: 310 EFPGIERFHGLGQLTPAQLGTLSGTWRTIGRPEIELGSELWQAYASPDPTRMADLLDQKN 369 ++ +GLG+L L L + +IE +WQ Y S +P R+ +L D KN Sbjct: 123 NEDESDKLYGLGELDNDYLMKLYENRTELSMNDIEYADYVWQLYCSDNPIRLENLTDFKN 182 Query: 370 AELAASGLPFASEAFRTHLMRLPSVHNGLGIVEQATFD-ALASGAHTPLELFRQVTDTLH 428 + + S+A + HL R P++ NGL +E +L + EL R V + Sbjct: 183 YK-----FDYLSDAIKAHLRRFPTIKNGLNSLENNILQLSLDEKPKSKRELLRTVLNNQG 237 Query: 429 VLGMGDLEYWKVLRAL 444 V G GD ++ +++ L Sbjct: 238 VYGYGDTQFERMISNL 253 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,147,087,959 Number of extensions: 132061676 Number of successful extensions: 302443 Number of sequences better than 1.0e-05: 1513 Number of HSP's gapped: 303397 Number of HSP's successfully gapped: 1513 Length of query: 528 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 387 Effective length of database: 1,732,333,088 Effective search space: 670412905056 Effective search space used: 670412905056 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)