BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0530.0008.p (181 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KEN5.1 B3KEN5_9BACI Regulatory protein MerR 320 5e-86 C2REW8.1 C2REW8_BACCE Putative uncharacterized protein 211 2e-53 C3AV81.1 C3AV81_BACMY Putative uncharacterized protein 209 6e-53 C3I7U2.1 C3I7U2_BACTU Putative uncharacterized protein 196 7e-49 C3AY90.1 C3AY90_BACMY Putative uncharacterized protein 194 3e-48 >B3KEN5.1 B3KEN5_9BACI Regulatory protein MerR Length = 233 Score = 320 bits (819), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 153/177 (86%), Positives = 166/177 (93%) Query: 1 LIQGFGIPVSYDVMSLLKKGHVEQALWKINSHQYNIQMEKQRVEEVMSLIQKTDFSKYKN 60 L+QGF +P++Y+VMSLLKKGHVEQALW IN QYNIQ+EKQRVEEVM LI +TDFSKY+N Sbjct: 57 LVQGFDLPIAYEVMSLLKKGHVEQALWMINVQQYNIQVEKQRVEEVMRLIHQTDFSKYRN 116 Query: 61 VQVTEEMKIGEVAAITGVNPSAIRHWEKEGLIRAKRNPENGYRVFTSRELKKIIVLSSLR 120 +QVT+EMKIGEVA I GVNPSAIRHWEKEGLIRAKRN ENGYRVFTS+ELKKIIVLSSLR Sbjct: 117 IQVTDEMKIGEVALIAGVNPSAIRHWEKEGLIRAKRNAENGYRVFTSQELKKIIVLSSLR 176 Query: 121 KTVFFIESMKQLLEALEIHDLTTIERSFKVALQKLNEQLEKQMNGIAELMRYIQFCK 177 KTVFFIESMKQLLEALE HDLTTIERSFKVALQKLNEQLEKQMNGI+E+MRYIQF K Sbjct: 177 KTVFFIESMKQLLEALETHDLTTIERSFKVALQKLNEQLEKQMNGISEMMRYIQFFK 233 >C2REW8.1 C2REW8_BACCE Putative uncharacterized protein Length = 232 Score = 211 bits (537), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 99/175 (56%), Positives = 134/175 (76%) Query: 1 LIQGFGIPVSYDVMSLLKKGHVEQALWKINSHQYNIQMEKQRVEEVMSLIQKTDFSKYKN 60 L++G+ IP+ Y VM ++K E+ALW IN Q+NIQ+EK+RVEE++++I+ DF+KYKN Sbjct: 56 LLKGYDIPIVYKVMRMIKNVKFEEALWLINEQQFNIQVEKKRVEEILNMIRNADFTKYKN 115 Query: 61 VQVTEEMKIGEVAAITGVNPSAIRHWEKEGLIRAKRNPENGYRVFTSRELKKIIVLSSLR 120 V+++E M IGE A I GVN SAIRHWE EGL+ ++RN ENGYR+F EL+KI+V+SSLR Sbjct: 116 VELSERMSIGEAAKIAGVNTSAIRHWEHEGLVHSERNKENGYRMFPISELRKILVISSLR 175 Query: 121 KTVFFIESMKQLLEALEIHDLTTIERSFKVALQKLNEQLEKQMNGIAELMRYIQF 175 KTV++IE+MK LL+ LE IERSF++AL+ LN QL Q G+ ELM+YI F Sbjct: 176 KTVYYIENMKSLLDDLETLPYGKIERSFQLALENLNTQLLLQFKGMEELMKYIHF 230 >C3AV81.1 C3AV81_BACMY Putative uncharacterized protein Length = 249 Score = 209 bits (533), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 97/181 (53%), Positives = 138/181 (76%) Query: 1 LIQGFGIPVSYDVMSLLKKGHVEQALWKINSHQYNIQMEKQRVEEVMSLIQKTDFSKYKN 60 L++G+ IP+ Y+VM ++K ++E+ALW +N ++IQ+EKQRVEE++++IQ D++KYKN Sbjct: 69 LLKGYEIPIVYEVMRMIKNQNLEKALWLVNEQLFHIQLEKQRVEEILAMIQNADYTKYKN 128 Query: 61 VQVTEEMKIGEVAAITGVNPSAIRHWEKEGLIRAKRNPENGYRVFTSRELKKIIVLSSLR 120 ++ E M IGEVA I GVN SAIRHWE EGL+ ++RN ENGYR+FT EL+KI+V+SSLR Sbjct: 129 RKLKECMSIGEVAEIAGVNASAIRHWEYEGLVHSERNKENGYRMFTITELRKILVISSLR 188 Query: 121 KTVFFIESMKQLLEALEIHDLTTIERSFKVALQKLNEQLEKQMNGIAELMRYIQFCKSLE 180 KTV++IE+MK+LL L + IERSF++A + +NEQL Q GI ELM+YI F + + Sbjct: 189 KTVYYIENMKKLLNELNTQNYNKIERSFQLASENINEQLFLQFKGITELMKYINFYQEMN 248 Query: 181 C 181 Sbjct: 249 A 249 >C3I7U2.1 C3I7U2_BACTU Putative uncharacterized protein Length = 232 Score = 196 bits (498), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 100/175 (57%), Positives = 134/175 (76%) Query: 1 LIQGFGIPVSYDVMSLLKKGHVEQALWKINSHQYNIQMEKQRVEEVMSLIQKTDFSKYKN 60 L++G+ IP+ Y VM ++K E+ALW IN Q+NIQ+EK+RVEE++++I+ DF+KYKN Sbjct: 56 LLKGYDIPIVYKVMRMIKNVKFEEALWLINEQQFNIQVEKKRVEEILNMIRNADFTKYKN 115 Query: 61 VQVTEEMKIGEVAAITGVNPSAIRHWEKEGLIRAKRNPENGYRVFTSRELKKIIVLSSLR 120 V++ E M IGE A I GVN SAIRHWE EGL+ ++RN ENGYR+F EL+KI+V+SSLR Sbjct: 116 VELNERMSIGEAANIAGVNTSAIRHWEHEGLVHSERNKENGYRMFPISELRKILVISSLR 175 Query: 121 KTVFFIESMKQLLEALEIHDLTTIERSFKVALQKLNEQLEKQMNGIAELMRYIQF 175 KTV++IE+MK LL+ LEI +ERSF++AL+ LN QL Q GI ELM+YI F Sbjct: 176 KTVYYIENMKSLLDDLEILHYGKMERSFQLALENLNNQLLLQFKGIEELMKYIHF 230 >C3AY90.1 C3AY90_BACMY Putative uncharacterized protein Length = 166 Score = 194 bits (492), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 91/166 (54%), Positives = 127/166 (76%) Query: 16 LLKKGHVEQALWKINSHQYNIQMEKQRVEEVMSLIQKTDFSKYKNVQVTEEMKIGEVAAI 75 ++K ++E+ALW +N ++IQ+EKQRVEE++++IQ D++KYKN ++ E M IGE A I Sbjct: 1 MIKNQNLEKALWLVNEQLFHIQLEKQRVEEILAMIQNADYTKYKNRKLKECMSIGEAAEI 60 Query: 76 TGVNPSAIRHWEKEGLIRAKRNPENGYRVFTSRELKKIIVLSSLRKTVFFIESMKQLLEA 135 GVN SAIRHWE EGL+ ++RN ENGYR+FT EL+KI+V+SSLRKTV++IE+MK+LL Sbjct: 61 AGVNASAIRHWEYEGLVYSERNKENGYRMFTITELRKILVISSLRKTVYYIENMKKLLNE 120 Query: 136 LEIHDLTTIERSFKVALQKLNEQLEKQMNGIAELMRYIQFCKSLEC 181 L + IERSF++AL+ +NEQL Q GIAELM+YI F + + Sbjct: 121 LNTQNYNKIERSFQLALENINEQLFLQFKGIAELMKYINFYQEMNA 166 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.133 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 920,544,127 Number of extensions: 31446081 Number of successful extensions: 126669 Number of sequences better than 1.0e-05: 175 Number of HSP's gapped: 127637 Number of HSP's successfully gapped: 175 Length of query: 181 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 54 Effective length of database: 1,864,227,298 Effective search space: 100668274092 Effective search space used: 100668274092 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)