BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0530.0003.p
         (59 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1C7G1.1 B1C7G1_9FIRM Putative uncharacterized protein                 61   3e-08
B5XIB4.1 B5XIB4_STRPZ Putative uncharacterized protein                 54   5e-06

>B1C7G1.1 B1C7G1_9FIRM Putative uncharacterized protein
          Length = 57

 Score = 61.2 bits (147), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 41/55 (74%)

Query: 5  KMGRPPSDNPKSELIRVRVDQAILSKLDACTKKLNTTRSDVIRRGIEKVYDELQK 59
          ++GR PS+NPK+ ++R+R+D+  L++LD C +K N  RS+ +R GI++ Y EL K
Sbjct: 3  RLGRKPSENPKNIMLRIRIDKETLARLDFCCEKENVNRSEFLRNGIDEKYAELNK 57


>B5XIB4.1 B5XIB4_STRPZ Putative uncharacterized protein
          Length = 59

 Score = 53.5 bits (127), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 41/58 (70%), Gaps = 1/58 (1%)

Query: 2  SSKKMGRPPSDNPKSELIRVRVDQAILSKLDACTKKLNTTRSDVIRRGIEKVYDELQK 59
          ++KK+GRP S NPKS   R+R+    + KL+ CTK+   T++DV+  G++KVY EL+K
Sbjct: 3  TTKKLGRPTS-NPKSHSKRLRMTDEEVQKLEYCTKQTGKTQTDVLMLGLDKVYQELKK 59


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.313    0.130    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 292,709,458
Number of extensions: 7488739
Number of successful extensions: 15920
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 15922
Number of HSP's successfully gapped: 2
Length of query: 59
Length of database: 3,060,696,203
Length adjustment: 31
Effective length of query: 28
Effective length of database: 2,768,644,738
Effective search space: 77522052664
Effective search space used: 77522052664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)