BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0529.0029.p (203 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KI97.1 B3KI97_9BACI Ribonuclease EC=3.1.26.- 286 9e-76 B1DMF6.1 B1DMF6_9BACL Ribonuclease EC=3.1.26.- 283 4e-75 A6TRS3.1 RNH2_ALKMQ Ribonuclease HII EC=3.1.26.4 248 2e-64 A8MHC7.1 RNH2_ALKOO Ribonuclease HII EC=3.1.26.4 238 2e-61 C2JKF9.1 C2JKF9_ENTFA Ribonuclease HII EC=3.1.26.4 194 5e-48 >B3KI97.1 B3KI97_9BACI Ribonuclease EC=3.1.26.- Length = 205 Score = 286 bits (731), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 140/203 (68%), Positives = 166/203 (81%), Gaps = 1/203 (0%) Query: 1 MLSYEKGCWEQDYRRIAGVDEVGRGCLFGDVVAAAVILPEGLIIEGVDDSKKLTAKKREL 60 +L YE+ W + Y IAG+DEVGRGCLFGDVVAAAVI+PEGL+IEG++DSKKL+AKKRE Sbjct: 4 LLMYEREYWSR-YIHIAGIDEVGRGCLFGDVVAAAVIMPEGLVIEGINDSKKLSAKKRET 62 Query: 61 LFEQIMEQALAVSVGHVDSVVIDEINIKQASRLAMKKAVEGLEYRPDYMLIDAEKIDLPL 120 L++ IMEQALAV VG VD+ ID INIKQA+RLAMKKA+E L P ++L+DAEK+D + Sbjct: 63 LYDLIMEQALAVGVGLVDAETIDRINIKQAARLAMKKAIEQLAVPPQFLLVDAEKVDCDI 122 Query: 121 PQQAIIKGDANSQSIAAASIVAKVTRDRLCEGRWEELYPDYGIKIHKGYATKLHREQLLA 180 PQ+AIIKGDANSQSI AASI+AKVTRDRLCEG WE YP+YGI +HKGYATK HREQL Sbjct: 123 PQRAIIKGDANSQSIGAASIIAKVTRDRLCEGEWEARYPEYGIAVHKGYATKFHREQLQL 182 Query: 181 LGPTPMHRRSFLGKILSDEPVLF 203 GPT MHRRSFL + ++ LF Sbjct: 183 HGPTAMHRRSFLKNMEIEQLSLF 205 >B1DMF6.1 B1DMF6_9BACL Ribonuclease EC=3.1.26.- Length = 203 Score = 283 bits (725), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 137/203 (67%), Positives = 165/203 (81%) Query: 1 MLSYEKGCWEQDYRRIAGVDEVGRGCLFGDVVAAAVILPEGLIIEGVDDSKKLTAKKREL 60 ML YE+ W + Y IAGVDEVGRGCLFGDVVAAAVILP L++EGV+DSKKL+ KKR Sbjct: 1 MLEYEERLWAEGYSAIAGVDEVGRGCLFGDVVAAAVILPPHLVLEGVNDSKKLSEKKRNE 60 Query: 61 LFEQIMEQALAVSVGHVDSVVIDEINIKQASRLAMKKAVEGLEYRPDYMLIDAEKIDLPL 120 L++ I++Q++A + VD+ ID INIKQA+RLAMK A+E L+ PDY L+DAEK+DLP Sbjct: 61 LYDIIVDQSIAWAAARVDAETIDRINIKQAARLAMKIALESLKTEPDYFLVDAEKVDLPK 120 Query: 121 PQQAIIKGDANSQSIAAASIVAKVTRDRLCEGRWEELYPDYGIKIHKGYATKLHREQLLA 180 PQ AIIKGDA SQSIAAASI+AKVTRDRLCE WE+LYP+YGI IHKGYATKLHRE+LL Sbjct: 121 PQLAIIKGDATSQSIAAASIIAKVTRDRLCEKEWEQLYPEYGIAIHKGYATKLHRERLLE 180 Query: 181 LGPTPMHRRSFLGKILSDEPVLF 203 G +P+HR+SFLGKI ++ LF Sbjct: 181 YGASPLHRKSFLGKIFVEQQQLF 203 >A6TRS3.1 RNH2_ALKMQ Ribonuclease HII EC=3.1.26.4 Length = 204 Score = 248 bits (634), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 128/201 (63%), Positives = 152/201 (75%), Gaps = 7/201 (3%) Query: 2 LSYEKGCWEQDYRRIAGVDEVGRGCLFGDVVAAAVILPEGLIIEGVDDSKKLTAKKRELL 61 L E WE+ Y IAG DEVGRGCLFG V+AA VILP+GL+IEGV DSKKL+ K+RE L Sbjct: 4 LEIENQLWEEGYESIAGCDEVGRGCLFGSVLAATVILPKGLLIEGVKDSKKLSPKRREEL 63 Query: 62 FEQIMEQALAVSVGHVDSVVIDEINIKQASRLAMKKAV------EGLEYRPDYMLIDAEK 115 +E I + A+A+ VG + + VID+INI+QASRLAMKK+V +G PDY+L+DAE Sbjct: 64 YEVIKKNAIAMGVGIISAEVIDQINIRQASRLAMKKSVLSLTTIDGESKIPDYILVDAEN 123 Query: 116 IDLPLPQQAIIKGDANSQSIAAASIVAKVTRDRLCEGRWEELYPDYGIKIHKGYATKLHR 175 ID+ +PQ AIIKGD SQ IAAASIVAKV RDRLC RW+E YP+YGI HKGY TKLHR Sbjct: 124 IDIAIPQSAIIKGDDRSQGIAAASIVAKVIRDRLCI-RWDEEYPNYGIAQHKGYGTKLHR 182 Query: 176 EQLLALGPTPMHRRSFLGKIL 196 E LL GP+ +HRRSFL KIL Sbjct: 183 EALLKYGPSELHRRSFLKKIL 203 >A8MHC7.1 RNH2_ALKOO Ribonuclease HII EC=3.1.26.4 Length = 203 Score = 238 bits (607), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 122/201 (60%), Positives = 149/201 (74%), Gaps = 7/201 (3%) Query: 2 LSYEKGCWEQDYRRIAGVDEVGRGCLFGDVVAAAVILPEGLIIEGVDDSKKLTAKKRELL 61 + E W Y IA DEVGRGCLFG V+AAAVI+P+ +II+GV DSKKL+ KKRE L Sbjct: 4 IDIESAIWNSGYENIACCDEVGRGCLFGSVLAAAVIMPKDVIIDGVKDSKKLSHKKREQL 63 Query: 62 FEQIMEQALAVSVGHVDSVVIDEINIKQASRLAMKKAVEGLEYR------PDYMLIDAEK 115 +E I E++LA+ VG V S +ID+INIK A+RLAMKKA+ L+ + PDY+LIDAE+ Sbjct: 64 YEIIKEKSLAIGVGTVSSEIIDKINIKNATRLAMKKAILSLKDKDGNIVAPDYILIDAEE 123 Query: 116 IDLPLPQQAIIKGDANSQSIAAASIVAKVTRDRLCEGRWEELYPDYGIKIHKGYATKLHR 175 ID+P PQ A+IKGD IAAASIVAKV RDRLC+ RWEE +P+YGI +KGY TK HR Sbjct: 124 IDVPTPQSAVIKGDDLCHGIAAASIVAKVLRDRLCQ-RWEEEHPNYGIGQNKGYGTKAHR 182 Query: 176 EQLLALGPTPMHRRSFLGKIL 196 E L GP+PMHR+SFL KIL Sbjct: 183 EALKEHGPSPMHRKSFLNKIL 203 >C2JKF9.1 C2JKF9_ENTFA Ribonuclease HII EC=3.1.26.4 Length = 255 Score = 194 bits (492), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 108/191 (56%), Positives = 143/191 (74%), Gaps = 1/191 (0%) Query: 1 MLSYEKGCWEQDYRRIAGVDEVGRGCLFGDVVAAAVILPEGLIIEGVDDSKKLTAKKREL 60 M +E+ +++ +R IAG+DEVGRG L G VV AAVILP+ + G++DSKKL+AKKRE Sbjct: 59 MSQFEEAAYKKGHRLIAGIDEVGRGPLAGPVVTAAVILPKDCQLLGLNDSKKLSAKKRET 118 Query: 61 LFEQIMEQALAVSVGHVDSVVIDEINIKQASRLAMKKAVEGLEYRPDYMLIDAEKIDLPL 120 L+ QI EQA+A+ +G D VID+INI QA++ AMK A++ L + PDY+LIDA ++D+P Sbjct: 119 LYNQIQEQAVAIGLGIADQGVIDQINIYQATKQAMKMAIDDLAFTPDYLLIDAMQLDVPQ 178 Query: 121 PQQAIIKGDANSQSIAAASIVAKVTRDRLCEGRWEELYPDYGIKIHKGYATKLHREQLLA 180 PQ+++IKGDA S SIAAASI+AKVTRDRL E ++ELYP YG K + GY TK H L Sbjct: 179 PQESLIKGDARSISIAAASIIAKVTRDRLME-EYDELYPGYGFKNNAGYGTKEHLLGLEK 237 Query: 181 LGPTPMHRRSF 191 G TP+HRR+F Sbjct: 238 YGVTPIHRRTF 248 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.138 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,172,522,040 Number of extensions: 44483409 Number of successful extensions: 120959 Number of sequences better than 1.0e-05: 1517 Number of HSP's gapped: 117717 Number of HSP's successfully gapped: 1525 Length of query: 203 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 74 Effective length of database: 1,845,385,268 Effective search space: 136558509832 Effective search space used: 136558509832 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)