BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0529.0028.p (277 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KI88.1 B3KI88_9BACI GTP-binding protein HSR1-related 442 e-122 B1DMF5.1 B1DMF5_9BACL GTP-binding protein HSR1-related 385 e-105 C2N524.1 C2N524_BACCE Ras superfamily GTP-binding protein YlqF 352 3e-95 C3IN41.1 C3IN41_BACTU Ras superfamily GTP-binding protein YlqF 352 3e-95 B7IUJ7.1 B7IUJ7_BACC2 GTPase family protein 351 3e-95 >B3KI88.1 B3KI88_9BACI GTP-binding protein HSR1-related Length = 288 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 211/278 (75%), Positives = 244/278 (87%), Gaps = 1/278 (0%) Query: 1 MTKARRQIEDKLKLIDVCIELLDSRLPLSSRNPMIDDILRDKPRLIILNKADLADPEATR 60 MTKARRQI++KLKLID IEL+D+RLPLSSRNPMID+IL+ KPRL+I+NKADLADPE TR Sbjct: 10 MTKARRQIQEKLKLIDAVIELIDARLPLSSRNPMIDEILQGKPRLVIMNKADLADPEVTR 69 Query: 61 KWLAFFKAEGHVAHPVDAATGTGIKEIPEQVKLLLKDKIDRQIAKGMNPRPSRALIVGIP 120 +W A+FK G A PVDA+TGTG+K+IP Q+KLLLK+KID+QIAKGMNPR R LIVGIP Sbjct: 70 QWQAYFKEAGLTAFPVDASTGTGVKDIPNQIKLLLKEKIDKQIAKGMNPRAMRVLIVGIP 129 Query: 121 NVGKSTLINRMAGKNIAATGDRPGVTKGQQWIKT-GGNLELLDTPGILWPKFEDQEVGYR 179 NVGKSTLINR+AG+NIA TGDRPGVTKGQQWIK GG +ELLDTPGILWPKFEDQ VGYR Sbjct: 130 NVGKSTLINRLAGRNIAETGDRPGVTKGQQWIKVAGGEMELLDTPGILWPKFEDQNVGYR 189 Query: 180 LAVTGAIKEEILNIEDIAFFAVKYLVKDYGASFQERFGIGQLPEDLDNPDEIVAVMEAVG 239 LAVTGAIKEEILN+EDIAFFA+KY Y + ERF + + P DLDNPDEIVAVMEA+G Sbjct: 190 LAVTGAIKEEILNVEDIAFFAIKYFANYYWETMSERFDLKERPTDLDNPDEIVAVMEAIG 249 Query: 240 RKRGCLISGGRVDLEKASRILLHDLRAGKLGRFTLETP 277 RKRGC++SGGRVDLEKAS + L +LRAGKLGR+++E+P Sbjct: 250 RKRGCIVSGGRVDLEKASSLFLRELRAGKLGRYSMESP 287 >B1DMF5.1 B1DMF5_9BACL GTP-binding protein HSR1-related Length = 296 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 184/277 (66%), Positives = 230/277 (83%) Query: 1 MTKARRQIEDKLKLIDVCIELLDSRLPLSSRNPMIDDILRDKPRLIILNKADLADPEATR 60 MT+A+RQI++KLKLID+ IELLD+R+PLSSRNPM+D+IL KPRLI+LNK DLADP T Sbjct: 10 MTRAKRQIQEKLKLIDIAIELLDARIPLSSRNPMVDEILGGKPRLIVLNKLDLADPRVTE 69 Query: 61 KWLAFFKAEGHVAHPVDAATGTGIKEIPEQVKLLLKDKIDRQIAKGMNPRPSRALIVGIP 120 +W+ +FK EGH VD++TGT + +IP + K +L++KIDRQ+AKGMNPR R LIVGIP Sbjct: 70 QWIDYFKYEGHETVAVDSSTGTRVGDIPVKAKEILQEKIDRQLAKGMNPRAIRGLIVGIP 129 Query: 121 NVGKSTLINRMAGKNIAATGDRPGVTKGQQWIKTGGNLELLDTPGILWPKFEDQEVGYRL 180 NVGKSTLINR+AG+NIA TGD+PGVTKGQQWIKT +++LLDTPGILWPKFED+ VGYRL Sbjct: 130 NVGKSTLINRLAGRNIAITGDKPGVTKGQQWIKTTFDMDLLDTPGILWPKFEDELVGYRL 189 Query: 181 AVTGAIKEEILNIEDIAFFAVKYLVKDYGASFQERFGIGQLPEDLDNPDEIVAVMEAVGR 240 A+TGAI+E+ILN+EDIAFFAV+ L + Y + QERF + + P D DE+V +ME +GR Sbjct: 190 AMTGAIREQILNVEDIAFFAVRELAERYWPALQERFKLDKAPTDPSESDEVVRIMEDIGR 249 Query: 241 KRGCLISGGRVDLEKASRILLHDLRAGKLGRFTLETP 277 +RGCL+SGG VDLEKAS I+L +LR+G LGR TLE P Sbjct: 250 RRGCLVSGGHVDLEKASGIILRELRSGNLGRITLEAP 286 >C2N524.1 C2N524_BACCE Ras superfamily GTP-binding protein YlqF Length = 296 Score = 352 bits (902), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 164/277 (59%), Positives = 216/277 (77%), Gaps = 6/277 (2%) Query: 1 MTKARRQIEDKLKLIDVCIELLDSRLPLSSRNPMIDDILRDKPRLIILNKADLADPEATR 60 M KARRQ+ +KLKLIDV IEL+D+RLPLSSRNPMID+I+ KPRL++LNKAD+AD T+ Sbjct: 10 MAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTK 69 Query: 61 KWLAFFKAEGHVAHPVDAATGTGIKEIPEQVKLLLKDKIDRQIAKGMNPRPSRALIVGIP 120 +W+A+FK +GH+A ++A G G+KEI K+L+K+K D+ +AKG+ PR RALIVGIP Sbjct: 70 QWIAYFKEKGHMAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIP 129 Query: 121 NVGKSTLINRMAGKNIAATGDRPGVTKGQQWIKTGGNLELLDTPGILWPKFEDQEVGYRL 180 NVGKSTLIN++A KNIA TGDRPGVT QQWIK G +ELLDTPGILWPKFEDQ VG RL Sbjct: 130 NVGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDQLVGLRL 189 Query: 181 AVTGAIKEEILNIEDIAFFAVKYLVKDYGASFQERFGIGQLPEDLDNPDEIVAVMEAVGR 240 A TGAIK+ ILN++D+A +A++++ K Y +ER+ + ++PED IV + +A+G+ Sbjct: 190 ATTGAIKDSILNLQDVAVYALRFMEKHYPERLKERYNLNEIPED------IVELFDAIGK 243 Query: 241 KRGCLISGGRVDLEKASRILLHDLRAGKLGRFTLETP 277 RGCL+ GG +D +K S ++L +LR GKLG+ T ETP Sbjct: 244 NRGCLMGGGMIDYDKTSELILRELRGGKLGKMTFETP 280 >C3IN41.1 C3IN41_BACTU Ras superfamily GTP-binding protein YlqF Length = 296 Score = 352 bits (902), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 164/277 (59%), Positives = 216/277 (77%), Gaps = 6/277 (2%) Query: 1 MTKARRQIEDKLKLIDVCIELLDSRLPLSSRNPMIDDILRDKPRLIILNKADLADPEATR 60 M KARRQ+ +KLKLIDV IEL+D+RLPLSSRNPMID+I+ KPRL++LNKAD+AD T+ Sbjct: 10 MAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTK 69 Query: 61 KWLAFFKAEGHVAHPVDAATGTGIKEIPEQVKLLLKDKIDRQIAKGMNPRPSRALIVGIP 120 +W+A+FK +GH+A ++A G G+KEI K+L+K+K D+ +AKG+ PR RALIVGIP Sbjct: 70 QWIAYFKEKGHMAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIP 129 Query: 121 NVGKSTLINRMAGKNIAATGDRPGVTKGQQWIKTGGNLELLDTPGILWPKFEDQEVGYRL 180 NVGKSTLIN++A KNIA TGDRPGVT QQWIK G +ELLDTPGILWPKFEDQ VG RL Sbjct: 130 NVGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDQLVGLRL 189 Query: 181 AVTGAIKEEILNIEDIAFFAVKYLVKDYGASFQERFGIGQLPEDLDNPDEIVAVMEAVGR 240 A TGAIK+ ILN++D+A +A++++ K Y +ER+ + ++PED IV + +A+G+ Sbjct: 190 ATTGAIKDSILNLQDVAVYALRFMEKQYPERLKERYNLNEIPED------IVELFDAIGK 243 Query: 241 KRGCLISGGRVDLEKASRILLHDLRAGKLGRFTLETP 277 RGCL+ GG +D +K S ++L +LR GKLG+ T ETP Sbjct: 244 NRGCLMGGGMIDYDKTSELVLRELRGGKLGKMTFETP 280 >B7IUJ7.1 B7IUJ7_BACC2 GTPase family protein Length = 296 Score = 351 bits (901), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 164/277 (59%), Positives = 216/277 (77%), Gaps = 6/277 (2%) Query: 1 MTKARRQIEDKLKLIDVCIELLDSRLPLSSRNPMIDDILRDKPRLIILNKADLADPEATR 60 M KARRQ+ +KLKLIDV IEL+D+RLPLSSRNPMID+I+ KPRL++LNKAD+AD T+ Sbjct: 10 MAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTK 69 Query: 61 KWLAFFKAEGHVAHPVDAATGTGIKEIPEQVKLLLKDKIDRQIAKGMNPRPSRALIVGIP 120 +W+A+FK +GH+A ++A G G+KEI K+L+K+K D+ +AKG+ PR RALIVGIP Sbjct: 70 QWIAYFKEKGHMAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIP 129 Query: 121 NVGKSTLINRMAGKNIAATGDRPGVTKGQQWIKTGGNLELLDTPGILWPKFEDQEVGYRL 180 NVGKSTLIN++A KNIA TGDRPGVT QQWIK G +ELLDTPGILWPKFEDQ VG RL Sbjct: 130 NVGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKFEDQLVGLRL 189 Query: 181 AVTGAIKEEILNIEDIAFFAVKYLVKDYGASFQERFGIGQLPEDLDNPDEIVAVMEAVGR 240 A TGAIK+ ILN++D+A +A++++ K Y +ER+ + ++PED IV + +A+G+ Sbjct: 190 ATTGAIKDSILNLQDVAVYALRFMEKHYPERLKERYNLNEIPED------IVELFDAIGK 243 Query: 241 KRGCLISGGRVDLEKASRILLHDLRAGKLGRFTLETP 277 RGCL+ GG +D +K S ++L +LR GKLG+ T ETP Sbjct: 244 NRGCLMGGGMIDYDKTSELVLRELRGGKLGKMTFETP 280 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.140 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,705,073,708 Number of extensions: 74192518 Number of successful extensions: 262824 Number of sequences better than 1.0e-05: 1676 Number of HSP's gapped: 261551 Number of HSP's successfully gapped: 1685 Length of query: 277 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 143 Effective length of database: 1,798,280,193 Effective search space: 257154067599 Effective search space used: 257154067599 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)